RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 DLGAP2Q9P1A6 1054 aa9.26□□□□□ -0.93
USP28-203ENST00000537490 CNTN3Q9P232 1028 aa9.26□□□□□ -0.93
USP28-203ENST00000537490 SIT1Q9Y3P8 196 aa9.26□□□□□ -0.93
USP28-203ENST00000537490 MTCL1Q9Y4B5 1905 aaKnown RBP9.26□□□□□ -0.93
USP28-203ENST00000537490 WDFY4Q6ZS81 3184 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 NPHP3-ACAD11A0A0J9YXS1 232 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 ARHGEF37A1IGU5 675 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 VWA3AA6NCI4 1184 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 SYN3O14994 580 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 ABLIM3O94929 683 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 CD2BP2O95400 341 aaKnown RBP9.25□□□□□ -0.93
USP28-203ENST00000537490 SEC24AO95486 1093 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 RHOP08100 348 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 PLA2G4BP0C869 781 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 PLS3P13797 630 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 GLULP15104 373 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 RPL9P32969 192 aaKnown RBP9.25□□□□□ -0.93
USP28-203ENST00000537490 SLC12A3P55017 1021 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 ARPP19P56211 112 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 STARD6P59095 220 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 SNW1Q13573 536 aaKnown RBP9.25□□□□□ -0.93
USP28-203ENST00000537490 MRPL58Q14197 206 aaKnown RBP9.25□□□□□ -0.93
USP28-203ENST00000537490 RABEP1Q15276 862 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 SLC5A9Q2M3M2 681 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 SLC44A4Q53GD3 710 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 RILPL1Q5EBL4 403 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 MTSS1LQ765P7 747 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 RTL10Q7L3V2 364 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 ZNF461Q8TAF7 563 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 MCRS1Q96EZ8 462 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 TMX3Q96JJ7 454 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 KXD1Q9BQD3 176 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 TIPINQ9BVW5 301 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 PLA2G2FQ9BZM2 168 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 HAPLN2Q9GZV7 340 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 KCNH3Q9ULD8 1083 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 MRPS23Q9Y3D9 190 aaKnown RBP9.25□□□□□ -0.93
USP28-203ENST00000537490 NUB1Q9Y5A7 615 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 RIF1Q5UIP0 2472 aaKnown RBP9.25□□□□□ -0.93
USP28-203ENST00000537490 VWA8A3KMH1 1905 aa9.25□□□□□ -0.93
USP28-203ENST00000537490 TOM1L1O75674 476 aa9.24□□□□□ -0.93
USP28-203ENST00000537490 LRG1P02750 347 aa9.24□□□□□ -0.93
USP28-203ENST00000537490 MAPTP10636 758 aaKnown RBP9.24□□□□□ -0.93
USP28-203ENST00000537490 ATF2P15336 505 aa9.24□□□□□ -0.93
USP28-203ENST00000537490 PTPN2P17706 415 aa9.24□□□□□ -0.93
USP28-203ENST00000537490 GJB2P29033 226 aa9.24□□□□□ -0.93
USP28-203ENST00000537490 ELF1P32519 619 aa9.24□□□□□ -0.93
USP28-203ENST00000537490 SMTNP53814 917 aa9.24□□□□□ -0.93
USP28-203ENST00000537490 SPAG1Q07617 926 aa9.24□□□□□ -0.93
USP28-203ENST00000537490 MCL1Q07820 350 aa9.24□□□□□ -0.93
USP28-203ENST00000537490 STRN3Q13033 797 aa9.24□□□□□ -0.93
USP28-203ENST00000537490 CTXN3Q4LDR2 81 aa9.24□□□□□ -0.93
USP28-203ENST00000537490 TMEM119Q4V9L6 283 aa9.24□□□□□ -0.93
USP28-203ENST00000537490 ARSHQ5FYA8 562 aa9.24□□□□□ -0.93
USP28-203ENST00000537490 ZPBP2Q6X784 338 aa9.24□□□□□ -0.93
USP28-203ENST00000537490 TCEAL8Q8IYN2 117 aa9.24□□□□□ -0.93
USP28-203ENST00000537490 ADSSL1Q8N142 457 aa9.24□□□□□ -0.93
USP28-203ENST00000537490 PJA1Q8NG27 643 aa9.24□□□□□ -0.93
USP28-203ENST00000537490 LRRC15Q8TF66 581 aa9.24□□□□□ -0.93
USP28-203ENST00000537490 DDX12PQ92771 950 aa9.24□□□□□ -0.93
USP28-203ENST00000537490 TCEAL4Q96EI5 215 aa9.24□□□□□ -0.93
USP28-203ENST00000537490 SHDQ96IW2 340 aa9.24□□□□□ -0.93
USP28-203ENST00000537490 SUSD3Q96L08 255 aa9.24□□□□□ -0.93
USP28-203ENST00000537490 CYP4F11Q9HBI6 524 aa9.24□□□□□ -0.93
USP28-203ENST00000537490 AVENQ9NQS1 362 aaPredicted RBP9.24□□□□□ -0.93
USP28-203ENST00000537490 ANKFY1Q9P2R3 1169 aa9.24□□□□□ -0.93
USP28-203ENST00000537490 TUBGCP4Q9UGJ1 667 aa9.24□□□□□ -0.93
USP28-203ENST00000537490 FBXL5Q9UKA1 691 aa9.24□□□□□ -0.93
USP28-203ENST00000537490 MTF2Q9Y483 593 aaPredicted RBP9.24□□□□□ -0.93
USP28-203ENST00000537490 KIF3AQ9Y496 699 aa9.24□□□□□ -0.93
USP28-203ENST00000537490 R4GN57 208 aa9.24□□□□□ -0.93
USP28-203ENST00000537490 KANSL1LA0AUZ9 987 aa9.23□□□□□ -0.93
USP28-203ENST00000537490 H3BQV1 296 aa9.23□□□□□ -0.93
USP28-203ENST00000537490 H7C4K7 107 aa9.23□□□□□ -0.93
USP28-203ENST00000537490 NRG2O14511 850 aaPredicted RBP9.23□□□□□ -0.93
USP28-203ENST00000537490 PRRG1O14668 218 aa9.23□□□□□ -0.93
USP28-203ENST00000537490 CLDN3O15551 220 aa9.23□□□□□ -0.93
USP28-203ENST00000537490 SP9P0CG40 484 aa9.23□□□□□ -0.93
USP28-203ENST00000537490 CXCL8P10145 99 aa9.23□□□□□ -0.93
USP28-203ENST00000537490 CEBPBP17676 345 aa9.23□□□□□ -0.93
USP28-203ENST00000537490 CD72P21854 359 aa9.23□□□□□ -0.93
USP28-203ENST00000537490 MCM4P33991 863 aa9.23□□□□□ -0.93
USP28-203ENST00000537490 TNFSF9P41273 254 aa9.23□□□□□ -0.93
USP28-203ENST00000537490 CCR2P41597 374 aa9.23□□□□□ -0.93
USP28-203ENST00000537490 NOLC1Q14978 699 aaKnown RBP eCLIP9.23□□□□□ -0.93
USP28-203ENST00000537490 MLF2Q15773 248 aaPredicted RBP9.23□□□□□ -0.93
USP28-203ENST00000537490 ZBTB6Q15916 424 aa9.23□□□□□ -0.93
USP28-203ENST00000537490 PRSS36Q5K4E3 855 aa9.23□□□□□ -0.93
USP28-203ENST00000537490 ARL6IP4Q66PJ3 421 aaKnown RBP9.23□□□□□ -0.93
USP28-203ENST00000537490 TANGO2Q6ICL3 276 aa9.23□□□□□ -0.93
USP28-203ENST00000537490 C1orf210Q8IVY1 113 aa9.23□□□□□ -0.93
USP28-203ENST00000537490 MAML2Q8IZL2 1156 aaPredicted RBP9.23□□□□□ -0.93
USP28-203ENST00000537490 HS6ST3Q8IZP7 471 aa9.23□□□□□ -0.93
USP28-203ENST00000537490 KCTD17Q8N5Z5 321 aa9.23□□□□□ -0.93
USP28-203ENST00000537490 CDK5RAP3Q96JB5 506 aa9.23□□□□□ -0.93
USP28-203ENST00000537490 TBC1D32Q96NH3 1257 aa9.23□□□□□ -0.93
USP28-203ENST00000537490 CORO1BQ9BR76 489 aa9.23□□□□□ -0.93
USP28-203ENST00000537490 DDX23Q9BUQ8 820 aaKnown RBP9.23□□□□□ -0.93
USP28-203ENST00000537490 KCNG1Q9UIX4 513 aa9.23□□□□□ -0.93
USP28-203ENST00000537490 PCDHB8Q9UN66 801 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms