RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 RCSD1Q6JBY9 416 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 AGGF1Q8N302 714 aaeCLIP11.19□□□□□ -0.62
CLIP1-209ENST00000537178 BATF3Q9NR55 127 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 RNF146Q9NTX7 359 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 WDR19Q8NEZ3 1342 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 POTECB2RU33 542 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 KIAA0391O15091 583 aaKnown RBP11.19□□□□□ -0.62
CLIP1-209ENST00000537178 NCK2O43639 380 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 ADORA2BP29275 332 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 CDC27P30260 824 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 SERPINB9P50453 376 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 SNRNP48Q6IEG0 339 aaKnown RBP11.19□□□□□ -0.62
CLIP1-209ENST00000537178 POTEAQ6S8J7 498 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 CLEC4FQ8N1N0 589 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 C1orf54Q8WWF1 131 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 RNPC3Q96LT9 517 aaKnown RBP11.19□□□□□ -0.62
CLIP1-209ENST00000537178 RBAKQ9NYW8 714 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-209ENST00000537178 MYO3BQ8WXR4 1341 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 hCG_2014768A0A024R1R8 64 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 USP17L15C9J2P7 530 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 USP17L13C9JLJ4 530 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 USP17L11C9JVI0 530 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 USP17L18D6R9N7 530 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 USP17L22D6RA61 530 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 USP17L17D6RBQ6 530 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 USP17L19D6RCP7 530 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 USP17L20D6RJB6 530 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 TBC1D4O60343 1298 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 CYP2C19P33261 490 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 SNAP25P60880 206 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 KRT17Q04695 432 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 KDSRQ06136 332 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 USP17L24Q0WX57 530 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 USP17L6PQ6QN14 398 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 GPD1LQ8N335 351 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 EME1Q96AY2 570 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 ARL8AQ96BM9 186 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 CMTM5Q96DZ9 223 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 SH3GL3Q99963 347 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 TSSK1BQ9BXA7 367 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 ZHX2Q9Y6X8 837 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 NFAT5O94916 1531 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 C5P01031 1676 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 USP17L5A8MUK1 530 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 ORC4O43929 436 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 CPB1P15086 417 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 EFNA5P52803 228 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 STILQ15468 1287 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 DALRD3Q5D0E6 543 aaKnown RBP11.18□□□□□ -0.62
CLIP1-209ENST00000537178 AARS2Q5JTZ9 985 aaKnown RBP11.18□□□□□ -0.62
CLIP1-209ENST00000537178 AGR3Q8TD06 166 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 PGBD4Q96DM1 585 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 H2AFY2Q9P0M6 372 aaPredicted RBP11.18□□□□□ -0.62
CLIP1-209ENST00000537178 WDR35Q9P2L0 1181 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 GABBR1Q9UBS5 961 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 F5H423 210 aaPredicted RBP11.18□□□□□ -0.62
CLIP1-209ENST00000537178 SESN2P58004 480 aaPredicted RBP11.18□□□□□ -0.62
CLIP1-209ENST00000537178 LRRC74AQ0VAA2 488 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 STAG2Q8N3U4 1231 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 SPATA4Q8NEY3 305 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 FAM129AQ9BZQ8 928 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 AKAP10O43572 662 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 KIF1CO43896 1103 aaKnown RBP11.18□□□□□ -0.62
CLIP1-209ENST00000537178 CYBBP04839 570 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 IMPDH2P12268 514 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 STX3Q13277 289 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 COBLL1Q53SF7 1204 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 TRIM69Q86WT6 500 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 TTLL6Q8N841 843 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 SGSM3Q96HU1 749 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 AGO2Q9UKV8 859 aaKnown RBP11.18□□□□□ -0.62
CLIP1-209ENST00000537178 PCDHB8Q9UN66 801 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 HEG1Q9ULI3 1381 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 MEFVO15553 781 aaPredicted RBP11.18□□□□□ -0.62
CLIP1-209ENST00000537178 TLR2O60603 784 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 TPI1P60174 286 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 KLC1Q07866 573 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 GTF2H3Q13889 308 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 TXNRD1Q16881 649 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 SWSAP1Q6NVH7 229 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 FOXP3Q9BZS1 431 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 POLR3FQ9H1D9 316 aaPredicted RBP11.18□□□□□ -0.62
CLIP1-209ENST00000537178 RAVER2Q9HCJ3 691 aaKnown RBP11.18□□□□□ -0.62
CLIP1-209ENST00000537178 PAIP2BQ9ULR5 123 aaKnown RBP11.18□□□□□ -0.62
CLIP1-209ENST00000537178 PLEKHG1Q9ULL1 1385 aa11.18□□□□□ -0.62
CLIP1-209ENST00000537178 GOLGA8TH3BQL2 631 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 M0R3G1 203 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 P3H1Q32P28 736 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 SPDYAQ5MJ70 313 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 CENPPQ6IPU0 288 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 FRMD5Q7Z6J6 570 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 FMR1NBQ8N0W7 255 aaPredicted RBP11.17□□□□□ -0.62
CLIP1-209ENST00000537178 KRT35Q92764 455 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 PRPF18Q99633 342 aaKnown RBP11.17□□□□□ -0.62
CLIP1-209ENST00000537178 PLEKHA5Q9HAU0 1116 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 EXOSC4Q9NPD3 245 aaKnown RBP11.17□□□□□ -0.62
CLIP1-209ENST00000537178 NWD2Q9ULI1 1742 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 TCP11X1B4DZS4 312 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 TRIM66O15016 1216 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 TOMM70O94826 608 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms