RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 CCL16O15467 120 aa14.33□□□□□ -0.12
RTN3-207ENST00000536011 ADAM12O43184 909 aa14.33□□□□□ -0.12
RTN3-207ENST00000536011 NARSO43776 548 aaKnown RBP14.33□□□□□ -0.12
RTN3-207ENST00000536011 CFHP08603 1231 aa14.33□□□□□ -0.12
RTN3-207ENST00000536011 LONP1P36776 959 aaKnown RBP14.33□□□□□ -0.12
RTN3-207ENST00000536011 MCL1Q07820 350 aa14.33□□□□□ -0.12
RTN3-207ENST00000536011 PABPC1LQ4VXU2 614 aaKnown RBP14.33□□□□□ -0.12
RTN3-207ENST00000536011 VARS2Q5ST30 1063 aaKnown RBP14.33□□□□□ -0.12
RTN3-207ENST00000536011 CWF19L1Q69YN2 538 aaKnown RBP14.33□□□□□ -0.12
RTN3-207ENST00000536011 SLC8B1Q6J4K2 584 aa14.33□□□□□ -0.12
RTN3-207ENST00000536011 APPL2Q8NEU8 664 aa14.33□□□□□ -0.12
RTN3-207ENST00000536011 RSAD2Q8WXG1 361 aa14.33□□□□□ -0.12
RTN3-207ENST00000536011 PLIN2Q99541 437 aa14.33□□□□□ -0.12
RTN3-207ENST00000536011 PLEKHA5Q9HAU0 1116 aa14.33□□□□□ -0.12
RTN3-207ENST00000536011 NUMBLQ9Y6R0 609 aa14.33□□□□□ -0.12
RTN3-207ENST00000536011 DOCK8Q8NF50 2099 aa14.33□□□□□ -0.12
RTN3-207ENST00000536011 MYH11P35749 1972 aa14.33□□□□□ -0.12
RTN3-207ENST00000536011 I3L4J1 428 aa14.32□□□□□ -0.12
RTN3-207ENST00000536011 PRRG1O14668 218 aa14.32□□□□□ -0.12
RTN3-207ENST00000536011 HNRNPDLO14979 420 aaKnown RBP14.32□□□□□ -0.12
RTN3-207ENST00000536011 XPOTO43592 962 aaKnown RBP14.32□□□□□ -0.12
RTN3-207ENST00000536011 TBCAO75347 108 aaKnown RBP14.32□□□□□ -0.12
RTN3-207ENST00000536011 CD2BP2O95400 341 aaKnown RBP14.32□□□□□ -0.12
RTN3-207ENST00000536011 LRG1P02750 347 aa14.32□□□□□ -0.12
RTN3-207ENST00000536011 KRT18P05783 430 aaKnown RBP14.32□□□□□ -0.12
RTN3-207ENST00000536011 CLTAP09496 248 aa14.32□□□□□ -0.12
RTN3-207ENST00000536011 BRCC3P46736 316 aa14.32□□□□□ -0.12
RTN3-207ENST00000536011 LIG4P49917 911 aa14.32□□□□□ -0.12
RTN3-207ENST00000536011 NCKAP1LP55160 1127 aa14.32□□□□□ -0.12
RTN3-207ENST00000536011 SOX4Q06945 474 aaPredicted RBP14.32□□□□□ -0.12
RTN3-207ENST00000536011 ZNF280DQ6N043 979 aa14.32□□□□□ -0.12
RTN3-207ENST00000536011 GPBP1Q86WP2 473 aa14.32□□□□□ -0.12
RTN3-207ENST00000536011 CCDC105Q8IYK2 499 aa14.32□□□□□ -0.12
RTN3-207ENST00000536011 C3orf58Q8NDZ4 430 aa14.32□□□□□ -0.12
RTN3-207ENST00000536011 ZNF461Q8TAF7 563 aa14.32□□□□□ -0.12
RTN3-207ENST00000536011 FGF13Q92913 245 aa14.32□□□□□ -0.12
RTN3-207ENST00000536011 KCNN1Q92952 543 aa14.32□□□□□ -0.12
RTN3-207ENST00000536011 SHDQ96IW2 340 aa14.32□□□□□ -0.12
RTN3-207ENST00000536011 ZMAT2Q96NC0 199 aaKnown RBP14.32□□□□□ -0.12
RTN3-207ENST00000536011 TSPAN18Q96SJ8 248 aa14.32□□□□□ -0.12
RTN3-207ENST00000536011 PHOX2BQ99453 314 aa14.32□□□□□ -0.12
RTN3-207ENST00000536011 PARVGQ9HBI0 331 aa14.32□□□□□ -0.12
RTN3-207ENST00000536011 ARHGEF3Q9NR81 526 aa14.32□□□□□ -0.12
RTN3-207ENST00000536011 SLC2A4RGQ9NR83 387 aa14.32□□□□□ -0.12
RTN3-207ENST00000536011 FAM86C1Q9NVL1 165 aa14.32□□□□□ -0.12
RTN3-207ENST00000536011 DMDP11532 3685 aa14.32□□□□□ -0.12
RTN3-207ENST00000536011 ZFHX2Q9C0A1 2572 aaPredicted RBP14.31□□□□□ -0.12
RTN3-207ENST00000536011 TRIP11Q15643 1979 aa14.31□□□□□ -0.12
RTN3-207ENST00000536011 VPS13AQ96RL7 3174 aa14.31□□□□□ -0.12
RTN3-207ENST00000536011 PROB1E7EW31 1015 aa14.31□□□□□ -0.12
RTN3-207ENST00000536011 GFRA3O60609 400 aa14.31□□□□□ -0.12
RTN3-207ENST00000536011 FAM13AO94988 1023 aa14.31□□□□□ -0.12
RTN3-207ENST00000536011 NPR3P17342 541 aa14.31□□□□□ -0.12
RTN3-207ENST00000536011 MCM4P33991 863 aa14.31□□□□□ -0.12
RTN3-207ENST00000536011 ROR1Q01973 937 aa14.31□□□□□ -0.12
RTN3-207ENST00000536011 PPP2R3AQ06190 1150 aa14.31□□□□□ -0.12
RTN3-207ENST00000536011 TPGS2Q68CL5 300 aa14.31□□□□□ -0.12
RTN3-207ENST00000536011 PHLDB3Q6NSJ2 640 aa14.31□□□□□ -0.12
RTN3-207ENST00000536011 CD300LGQ6UXG3 332 aa14.31□□□□□ -0.12
RTN3-207ENST00000536011 HAUS6Q7Z4H7 955 aa14.31□□□□□ -0.12
RTN3-207ENST00000536011 MYCT1Q8N699 235 aa14.31□□□□□ -0.12
RTN3-207ENST00000536011 C18orf25Q96B23 403 aaPredicted RBP14.31□□□□□ -0.12
RTN3-207ENST00000536011 ZBTB45Q96K62 511 aaPredicted RBP14.31□□□□□ -0.12
RTN3-207ENST00000536011 SUSD3Q96L08 255 aa14.31□□□□□ -0.12
RTN3-207ENST00000536011 REEP2Q9BRK0 252 aa14.31□□□□□ -0.12
RTN3-207ENST00000536011 OXCT2Q9BYC2 517 aaPredicted RBP14.31□□□□□ -0.12
RTN3-207ENST00000536011 CA14Q9ULX7 337 aa14.31□□□□□ -0.12
RTN3-207ENST00000536011 MAFFQ9ULX9 164 aa14.31□□□□□ -0.12
RTN3-207ENST00000536011 MRPS23Q9Y3D9 190 aaKnown RBP14.31□□□□□ -0.12
RTN3-207ENST00000536011 ARHGEF37A1IGU5 675 aa14.3□□□□□ -0.12
RTN3-207ENST00000536011 VPS37CA5D8V6 355 aaPredicted RBP14.3□□□□□ -0.12
RTN3-207ENST00000536011 K7ENM7 598 aa14.3□□□□□ -0.12
RTN3-207ENST00000536011 MARCKSP29966 332 aaPredicted RBP14.3□□□□□ -0.12
RTN3-207ENST00000536011 NBL1P41271 181 aa14.3□□□□□ -0.12
RTN3-207ENST00000536011 NTHL1P78549 312 aa14.3□□□□□ -0.12
RTN3-207ENST00000536011 PFKPQ01813 784 aa14.3□□□□□ -0.12
RTN3-207ENST00000536011 SLC10A6Q3KNW5 377 aa14.3□□□□□ -0.12
RTN3-207ENST00000536011 CTXN3Q4LDR2 81 aa14.3□□□□□ -0.12
RTN3-207ENST00000536011 ARSHQ5FYA8 562 aa14.3□□□□□ -0.12
RTN3-207ENST00000536011 ELMOD1Q8N336 334 aa14.3□□□□□ -0.12
RTN3-207ENST00000536011 DTWD2Q8NBA8 298 aa14.3□□□□□ -0.12
RTN3-207ENST00000536011 GPR152Q8TDT2 470 aa14.3□□□□□ -0.12
RTN3-207ENST00000536011 TBC1D17Q9HA65 648 aa14.3□□□□□ -0.12
RTN3-207ENST00000536011 AVENQ9NQS1 362 aaPredicted RBP14.3□□□□□ -0.12
RTN3-207ENST00000536011 GDE1Q9NZC3 331 aa14.3□□□□□ -0.12
RTN3-207ENST00000536011 UBQLN1Q9UMX0 589 aaKnown RBP14.3□□□□□ -0.12
RTN3-207ENST00000536011 NPHP3-ACAD11A0A0J9YXS1 232 aa14.29□□□□□ -0.12
RTN3-207ENST00000536011 KRBA1A5PL33 1030 aa14.29□□□□□ -0.12
RTN3-207ENST00000536011 ABLIM3O94929 683 aa14.29□□□□□ -0.12
RTN3-207ENST00000536011 PIGRP01833 764 aa14.29□□□□□ -0.12
RTN3-207ENST00000536011 CXCL8P10145 99 aa14.29□□□□□ -0.12
RTN3-207ENST00000536011 ATF2P15336 505 aa14.29□□□□□ -0.12
RTN3-207ENST00000536011 PTPN2P17706 415 aa14.29□□□□□ -0.12
RTN3-207ENST00000536011 PLCG1P19174 1290 aa14.29□□□□□ -0.12
RTN3-207ENST00000536011 CYP3A5P20815 502 aa14.29□□□□□ -0.12
RTN3-207ENST00000536011 PAX3P23760 479 aa14.29□□□□□ -0.12
RTN3-207ENST00000536011 TXLNAP40222 546 aa14.29□□□□□ -0.12
RTN3-207ENST00000536011 ZNF131P52739 623 aa14.29□□□□□ -0.12
RTN3-207ENST00000536011 ARPP19P56211 112 aa14.29□□□□□ -0.12
RTN3-207ENST00000536011 DHX8Q14562 1220 aaKnown RBP14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms