RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 RASSF9O75901 435 aa17.09■□□□□ 0.33
CHMP1A-202ENST00000535997 PROSCO94903 275 aa17.09■□□□□ 0.33
CHMP1A-202ENST00000535997 GHRP10912 638 aa17.09■□□□□ 0.33
CHMP1A-202ENST00000535997 BACE1P56817 501 aa17.09■□□□□ 0.33
CHMP1A-202ENST00000535997 LLGL1Q15334 1064 aa17.09■□□□□ 0.33
CHMP1A-202ENST00000535997 SWT1Q5T5J6 900 aaKnown RBP17.09■□□□□ 0.33
CHMP1A-202ENST00000535997 EXOC3L1Q86VI1 746 aa17.09■□□□□ 0.33
CHMP1A-202ENST00000535997 TRAIPQ9BWF2 469 aa17.09■□□□□ 0.33
CHMP1A-202ENST00000535997 TRIM7Q9C029 511 aa17.09■□□□□ 0.33
CHMP1A-202ENST00000535997 DCLK3Q9C098 648 aa17.09■□□□□ 0.33
CHMP1A-202ENST00000535997 SEPT9Q9UHD8 586 aaPredicted RBP17.09■□□□□ 0.33
CHMP1A-202ENST00000535997 FER1L6Q2WGJ9 1857 aa17.08■□□□□ 0.33
CHMP1A-202ENST00000535997 STAM2O75886 525 aa17.08■□□□□ 0.33
CHMP1A-202ENST00000535997 TTC4O95801 387 aa17.08■□□□□ 0.33
CHMP1A-202ENST00000535997 XKR3Q5GH77 459 aa17.08■□□□□ 0.33
CHMP1A-202ENST00000535997 TRIM72Q6ZMU5 477 aa17.08■□□□□ 0.33
CHMP1A-202ENST00000535997 WNK4Q96J92 1243 aa17.08■□□□□ 0.33
CHMP1A-202ENST00000535997 PRMT1Q99873 361 aaKnown RBP17.08■□□□□ 0.33
CHMP1A-202ENST00000535997 POLR3FQ9H1D9 316 aaPredicted RBP17.08■□□□□ 0.33
CHMP1A-202ENST00000535997 MRPL47Q9HD33 250 aaKnown RBP17.08■□□□□ 0.33
CHMP1A-202ENST00000535997 KIAA1217Q5T5P2 1943 aa17.08■□□□□ 0.32
CHMP1A-202ENST00000535997 CALCAP01258 141 aa17.08■□□□□ 0.32
CHMP1A-202ENST00000535997 HLA-DRAP01903 254 aa17.08■□□□□ 0.32
CHMP1A-202ENST00000535997 POTEJP0CG39 1038 aa17.08■□□□□ 0.32
CHMP1A-202ENST00000535997 ATP5DP30049 168 aa17.08■□□□□ 0.32
CHMP1A-202ENST00000535997 ZNF280AP59817 542 aaPredicted RBP17.08■□□□□ 0.32
CHMP1A-202ENST00000535997 ACTR2P61160 394 aa17.08■□□□□ 0.32
CHMP1A-202ENST00000535997 PRKCEQ02156 737 aa17.08■□□□□ 0.32
CHMP1A-202ENST00000535997 STRN3Q13033 797 aa17.08■□□□□ 0.32
CHMP1A-202ENST00000535997 ITIH4Q14624 930 aa17.08■□□□□ 0.32
CHMP1A-202ENST00000535997 LIN9Q5TKA1 542 aa17.08■□□□□ 0.32
CHMP1A-202ENST00000535997 SNRNP48Q6IEG0 339 aaKnown RBP17.08■□□□□ 0.32
CHMP1A-202ENST00000535997 PPP1R2P3Q6NXS1 205 aa17.08■□□□□ 0.32
CHMP1A-202ENST00000535997 MON1BQ7L1V2 547 aa17.08■□□□□ 0.32
CHMP1A-202ENST00000535997 CCDC60Q8IWA6 550 aaPredicted RBP17.08■□□□□ 0.32
CHMP1A-202ENST00000535997 KLC4Q9NSK0 619 aa17.08■□□□□ 0.32
CHMP1A-202ENST00000535997 AGO2Q9UKV8 859 aaKnown RBP17.08■□□□□ 0.32
CHMP1A-202ENST00000535997 CCT8L1PA6NM43 557 aa17.07■□□□□ 0.32
CHMP1A-202ENST00000535997 PSTPIP1O43586 416 aa17.07■□□□□ 0.32
CHMP1A-202ENST00000535997 MNAT1P51948 309 aa17.07■□□□□ 0.32
CHMP1A-202ENST00000535997 GTF2A1P52655 376 aaPredicted RBP17.07■□□□□ 0.32
CHMP1A-202ENST00000535997 KLF1Q13351 362 aaPredicted RBP17.07■□□□□ 0.32
CHMP1A-202ENST00000535997 CNGA2Q16280 664 aa17.07■□□□□ 0.32
CHMP1A-202ENST00000535997 CCNG2Q16589 344 aa17.07■□□□□ 0.32
CHMP1A-202ENST00000535997 SLFN12LQ6IEE8 588 aa17.07■□□□□ 0.32
CHMP1A-202ENST00000535997 MIS18BP1Q6P0N0 1132 aa17.07■□□□□ 0.32
CHMP1A-202ENST00000535997 RHOT1Q8IXI2 618 aa17.07■□□□□ 0.32
CHMP1A-202ENST00000535997 REPS2Q8NFH8 660 aa17.07■□□□□ 0.32
CHMP1A-202ENST00000535997 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.07■□□□□ 0.32
CHMP1A-202ENST00000535997 DDX23Q9BUQ8 820 aaKnown RBP17.07■□□□□ 0.32
CHMP1A-202ENST00000535997 ADAMTS5Q9UNA0 930 aa17.07■□□□□ 0.32
CHMP1A-202ENST00000535997 SPATA31C2B4DYI2 1134 aa17.07■□□□□ 0.32
CHMP1A-202ENST00000535997 TCEA3O75764 348 aa17.07■□□□□ 0.32
CHMP1A-202ENST00000535997 ACSL3O95573 720 aa17.07■□□□□ 0.32
CHMP1A-202ENST00000535997 ACO1P21399 889 aaKnown RBP17.07■□□□□ 0.32
CHMP1A-202ENST00000535997 ADCY8P40145 1251 aa17.07■□□□□ 0.32
CHMP1A-202ENST00000535997 SCTRP47872 440 aa17.07■□□□□ 0.32
CHMP1A-202ENST00000535997 GNPTABQ3T906 1256 aa17.07■□□□□ 0.32
CHMP1A-202ENST00000535997 TDRD10Q5VZ19 366 aaKnown RBP17.07■□□□□ 0.32
CHMP1A-202ENST00000535997 LRRC34Q8IZ02 419 aa17.07■□□□□ 0.32
CHMP1A-202ENST00000535997 ABRAQ8N0Z2 381 aa17.07■□□□□ 0.32
CHMP1A-202ENST00000535997 JDP2Q8WYK2 163 aa17.07■□□□□ 0.32
CHMP1A-202ENST00000535997 ATG4AQ8WYN0 398 aa17.07■□□□□ 0.32
CHMP1A-202ENST00000535997 SCLT1Q96NL6 688 aa17.07■□□□□ 0.32
CHMP1A-202ENST00000535997 SAMD15Q9P1V8 674 aa17.07■□□□□ 0.32
CHMP1A-202ENST00000535997 ANAPC5Q9UJX4 755 aa17.07■□□□□ 0.32
CHMP1A-202ENST00000535997 LDHAP00338 332 aaKnown RBP17.06■□□□□ 0.32
CHMP1A-202ENST00000535997 PIK3CAP42336 1068 aa17.06■□□□□ 0.32
CHMP1A-202ENST00000535997 ITGA8P53708 1063 aa17.06■□□□□ 0.32
CHMP1A-202ENST00000535997 CUL2Q13617 745 aa17.06■□□□□ 0.32
CHMP1A-202ENST00000535997 LONRF1Q17RB8 773 aa17.06■□□□□ 0.32
CHMP1A-202ENST00000535997 CCDC89Q8N998 374 aa17.06■□□□□ 0.32
CHMP1A-202ENST00000535997 BBOF1Q8ND07 529 aa17.06■□□□□ 0.32
CHMP1A-202ENST00000535997 IPO4Q8TEX9 1081 aaKnown RBP17.06■□□□□ 0.32
CHMP1A-202ENST00000535997 ARHGEF2Q92974 986 aaKnown RBP17.06■□□□□ 0.32
CHMP1A-202ENST00000535997 JPH2Q9BR39 696 aaPredicted RBP17.06■□□□□ 0.32
CHMP1A-202ENST00000535997 MAF1Q9H063 256 aa17.06■□□□□ 0.32
CHMP1A-202ENST00000535997 CCDC113Q9H0I3 377 aa17.06■□□□□ 0.32
CHMP1A-202ENST00000535997 AS3MTQ9HBK9 375 aa17.06■□□□□ 0.32
CHMP1A-202ENST00000535997 ADAM22Q9P0K1 906 aa17.06■□□□□ 0.32
CHMP1A-202ENST00000535997 NEU2Q9Y3R4 380 aa17.06■□□□□ 0.32
CHMP1A-202ENST00000535997 RALAP11233 206 aa17.05■□□□□ 0.32
CHMP1A-202ENST00000535997 ATF2P15336 505 aa17.05■□□□□ 0.32
CHMP1A-202ENST00000535997 NLRP11P59045 1033 aaKnown RBP17.05■□□□□ 0.32
CHMP1A-202ENST00000535997 MAMLD1Q13495 774 aa17.05■□□□□ 0.32
CHMP1A-202ENST00000535997 LMBRD2Q68DH5 695 aaPredicted RBP17.05■□□□□ 0.32
CHMP1A-202ENST00000535997 CRELD2Q6UXH1 353 aaPredicted RBP17.05■□□□□ 0.32
CHMP1A-202ENST00000535997 PHF13Q86YI8 300 aaPredicted RBP17.05■□□□□ 0.32
CHMP1A-202ENST00000535997 KATNAL2Q8IYT4 538 aa17.05■□□□□ 0.32
CHMP1A-202ENST00000535997 ZNF280CQ8ND82 737 aa17.05■□□□□ 0.32
CHMP1A-202ENST00000535997 CAMKK2Q96RR4 588 aa17.05■□□□□ 0.32
CHMP1A-202ENST00000535997 HERPUD2Q9BSE4 406 aa17.05■□□□□ 0.32
CHMP1A-202ENST00000535997 NSRP1Q9H0G5 558 aaKnown RBP17.05■□□□□ 0.32
CHMP1A-202ENST00000535997 SLC40A1Q9NP59 571 aa17.05■□□□□ 0.32
CHMP1A-202ENST00000535997 ZNF214Q9UL59 606 aaPredicted RBP17.05■□□□□ 0.32
CHMP1A-202ENST00000535997 CNTN6Q9UQ52 1028 aa17.05■□□□□ 0.32
CHMP1A-202ENST00000535997 UMODL1Q5DID0 1318 aa17.05■□□□□ 0.32
CHMP1A-202ENST00000535997 ARID2Q68CP9 1835 aa17.05■□□□□ 0.32
CHMP1A-202ENST00000535997 ATP2A1O14983 1001 aa17.05■□□□□ 0.32
CHMP1A-202ENST00000535997 SORBS3O60504 671 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms