RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 GRM7Q14831 915 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 LONRF1Q17RB8 773 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 FAM47AQ5JRC9 791 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 USP45Q70EL2 814 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 OVCH2Q7RTZ1 564 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 DRC7Q8IY82 874 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 FAM186BQ8IYM0 893 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 GRAMD1CQ8IYS0 662 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 PQLC1Q8N2U9 271 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 PRR18Q8N4B5 295 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 PPM1NQ8N819 430 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 ANKRD42Q8N9B4 389 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 FAM156AQ8NDB6 213 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 HOXB13Q92826 284 aaPredicted RBP4.28□□□□□ -1.72
CSMD3-210ENST00000534172 C1GALT1C1Q96EU7 318 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 LRRC37BQ96QE4 947 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 MAP3K14Q99558 947 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 SENP6Q9GZR1 1112 aaPredicted RBP4.28□□□□□ -1.72
CSMD3-210ENST00000534172 MEGF9Q9H1U4 602 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 FAM204AQ9H8W3 233 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 PPP4R1LQ9P1A2 415 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 TRPS1Q9UHF7 1281 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 SERPINB13Q9UIV8 391 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 DUSP10Q9Y6W6 482 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 MATN2O00339 956 aa4.27□□□□□ -1.73
CSMD3-210ENST00000534172 HTRA2O43464 458 aaPredicted RBP4.27□□□□□ -1.73
CSMD3-210ENST00000534172 ITGA10O75578 1167 aa4.27□□□□□ -1.73
CSMD3-210ENST00000534172 HOXA5P20719 270 aa4.27□□□□□ -1.73
CSMD3-210ENST00000534172 PDCP20941 246 aa4.27□□□□□ -1.73
CSMD3-210ENST00000534172 BDNFP23560 247 aa4.27□□□□□ -1.73
CSMD3-210ENST00000534172 ADSLP30566 484 aaPredicted RBP4.27□□□□□ -1.73
CSMD3-210ENST00000534172 ALDH5A1P51649 535 aaPredicted RBP4.27□□□□□ -1.73
CSMD3-210ENST00000534172 APBA1Q02410 837 aa4.27□□□□□ -1.73
CSMD3-210ENST00000534172 FKBP15Q5T1M5 1219 aa4.27□□□□□ -1.73
CSMD3-210ENST00000534172 RSPH3Q86UC2 560 aa4.27□□□□□ -1.73
CSMD3-210ENST00000534172 MSL3Q8N5Y2 521 aaKnown RBP4.27□□□□□ -1.73
CSMD3-210ENST00000534172 PPP1R35Q8TAP8 253 aa4.27□□□□□ -1.73
CSMD3-210ENST00000534172 MYD88Q99836 296 aa4.27□□□□□ -1.73
CSMD3-210ENST00000534172 PLA2G12BQ9BX93 195 aa4.27□□□□□ -1.73
CSMD3-210ENST00000534172 CASS4Q9NQ75 786 aa4.27□□□□□ -1.73
CSMD3-210ENST00000534172 TDP1Q9NUW8 608 aa4.27□□□□□ -1.73
CSMD3-210ENST00000534172 AURKAIP1Q9NWT8 199 aaPredicted RBP4.27□□□□□ -1.73
CSMD3-210ENST00000534172 FNIP2Q9P278 1114 aa4.27□□□□□ -1.73
CSMD3-210ENST00000534172 IPPQ9Y573 584 aa4.27□□□□□ -1.73
CSMD3-210ENST00000534172 CCDC154A6NI56 674 aa4.27□□□□□ -1.73
CSMD3-210ENST00000534172 HOXA3O43365 443 aaPredicted RBP4.27□□□□□ -1.73
CSMD3-210ENST00000534172 PIP5K1CO60331 668 aa4.27□□□□□ -1.73
CSMD3-210ENST00000534172 SNRPA1P09661 255 aaKnown RBP4.27□□□□□ -1.73
CSMD3-210ENST00000534172 MGAT1P26572 445 aa4.27□□□□□ -1.73
CSMD3-210ENST00000534172 SREBF1P36956 1147 aa4.27□□□□□ -1.73
CSMD3-210ENST00000534172 HALP42357 657 aa4.27□□□□□ -1.73
CSMD3-210ENST00000534172 CCDC149Q6ZUS6 474 aa4.27□□□□□ -1.73
CSMD3-210ENST00000534172 ZNF572Q7Z3I7 529 aaPredicted RBP4.27□□□□□ -1.73
CSMD3-210ENST00000534172 TMX4Q9H1E5 349 aaPredicted RBP4.27□□□□□ -1.73
CSMD3-210ENST00000534172 EPC1Q9H2F5 836 aa4.27□□□□□ -1.73
CSMD3-210ENST00000534172 PLA2G3Q9NZ20 509 aa4.27□□□□□ -1.73
CSMD3-210ENST00000534172 HECAQ9UBI9 543 aaPredicted RBP4.27□□□□□ -1.73
CSMD3-210ENST00000534172 FBXO9Q9UK97 447 aaPredicted RBP4.27□□□□□ -1.73
CSMD3-210ENST00000534172 ABCC2Q92887 1545 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 ABHD14A-ACY1A0A1B0GW23 586 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 ADCY6O43306 1168 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 NBNO60934 754 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 HRGP04196 525 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 FTH1P19P0C7X4 201 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 SETSIPP0DME0 302 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 GNAT2P19087 354 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 CD53P19397 219 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 PTPN7P35236 360 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 WDR78Q5VTH9 848 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 SPOCD1Q6ZMY3 1216 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 GPR135Q8IZ08 494 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 CAMKK1Q8N5S9 505 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 C3orf20Q8ND61 904 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 IPO4Q8TEX9 1081 aaKnown RBP4.26□□□□□ -1.73
CSMD3-210ENST00000534172 DPYSL5Q9BPU6 564 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 SENP7Q9BQF6 1050 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 HERPUD2Q9BSE4 406 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 FAM30AQ9NZY2 134 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 LUZP4Q9P127 313 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 NAP1L2Q9ULW6 460 aaPredicted RBP4.26□□□□□ -1.73
CSMD3-210ENST00000534172 PCDHGB6Q9Y5F9 930 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 CPS1P31327 1500 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 PRG4Q92954 1404 aaPredicted RBP4.26□□□□□ -1.73
CSMD3-210ENST00000534172 K7ESM1 405 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 TUSC2O75896 110 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 DUSP8Q13202 625 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 DCAF17Q5H9S7 520 aaPredicted RBP4.26□□□□□ -1.73
CSMD3-210ENST00000534172 OTUD7BQ6GQQ9 843 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 GADL1Q6ZQY3 521 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 GSPT2Q8IYD1 628 aaKnown RBP4.26□□□□□ -1.73
CSMD3-210ENST00000534172 D2HGDHQ8N465 521 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 NLGN4YQ8NFZ3 816 aaPredicted RBP4.26□□□□□ -1.73
CSMD3-210ENST00000534172 MIEF2Q96C03 454 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 MVB12AQ96EY5 273 aa4.26□□□□□ -1.73
CSMD3-210ENST00000534172 CDK5RAP1Q96SZ6 601 aaKnown RBP4.26□□□□□ -1.73
CSMD3-210ENST00000534172 NCOA1Q15788 1441 aa4.25□□□□□ -1.73
CSMD3-210ENST00000534172 UHRF1BP1LA0JNW5 1464 aa4.25□□□□□ -1.73
CSMD3-210ENST00000534172 PRR5-ARHGAP8B1AHC4 643 aa4.25□□□□□ -1.73
CSMD3-210ENST00000534172 PQBP1O60828 265 aaKnown RBP4.25□□□□□ -1.73
CSMD3-210ENST00000534172 ALAS1P13196 640 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms