RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 SPATA1Q5VX52 437 aa14.11□□□□□ -0.15
VPS28-216ENST00000533806 JADE1Q6IE81 842 aa14.11□□□□□ -0.15
VPS28-216ENST00000533806 SYCE2Q6PIF2 218 aa14.11□□□□□ -0.15
VPS28-216ENST00000533806 SYCP3Q8IZU3 236 aa14.11□□□□□ -0.15
VPS28-216ENST00000533806 TMEM87AQ8NBN3 555 aa14.11□□□□□ -0.15
VPS28-216ENST00000533806 SMRP1Q8NCR6 262 aa14.11□□□□□ -0.15
VPS28-216ENST00000533806 LNX1Q8TBB1 728 aaPredicted RBP14.11□□□□□ -0.15
VPS28-216ENST00000533806 TMEM174Q8WUU8 243 aa14.11□□□□□ -0.15
VPS28-216ENST00000533806 PIK3R5Q8WYR1 880 aa14.11□□□□□ -0.15
VPS28-216ENST00000533806 KIF12Q96FN5 646 aa14.11□□□□□ -0.15
VPS28-216ENST00000533806 FBXL18Q96ME1 805 aa14.11□□□□□ -0.15
VPS28-216ENST00000533806 S1PR5Q9H228 398 aa14.11□□□□□ -0.15
VPS28-216ENST00000533806 AGPAT3Q9NRZ7 376 aa14.11□□□□□ -0.15
VPS28-216ENST00000533806 FNIP2Q9P278 1114 aa14.11□□□□□ -0.15
VPS28-216ENST00000533806 BARX2Q9UMQ3 279 aaPredicted RBP14.11□□□□□ -0.15
VPS28-216ENST00000533806 SSX2IPQ9Y2D8 614 aa14.11□□□□□ -0.15
VPS28-216ENST00000533806 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.11□□□□□ -0.15
VPS28-216ENST00000533806 UBE4BO95155 1302 aa14.11□□□□□ -0.15
VPS28-216ENST00000533806 KIAA0391O15091 583 aaKnown RBP14.1□□□□□ -0.15
VPS28-216ENST00000533806 EXTL3O43909 919 aa14.1□□□□□ -0.15
VPS28-216ENST00000533806 LDHAP00338 332 aaKnown RBP14.1□□□□□ -0.15
VPS28-216ENST00000533806 URODP06132 367 aa14.1□□□□□ -0.15
VPS28-216ENST00000533806 NDUFV1P49821 464 aa14.1□□□□□ -0.15
VPS28-216ENST00000533806 CLCN4P51793 760 aa14.1□□□□□ -0.15
VPS28-216ENST00000533806 SNRPFP62306 86 aaKnown RBP14.1□□□□□ -0.15
VPS28-216ENST00000533806 FAM160A1Q05DH4 1040 aa14.1□□□□□ -0.15
VPS28-216ENST00000533806 ELAVL2Q12926 359 aaKnown RBP14.1□□□□□ -0.15
VPS28-216ENST00000533806 PUS10Q3MIT2 529 aaKnown RBP14.1□□□□□ -0.15
VPS28-216ENST00000533806 FAM171A1Q5VUB5 890 aa14.1□□□□□ -0.15
VPS28-216ENST00000533806 ANKRD54Q6NXT1 300 aa14.1□□□□□ -0.15
VPS28-216ENST00000533806 LILRA6Q6PI73 481 aa14.1□□□□□ -0.15
VPS28-216ENST00000533806 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.1□□□□□ -0.15
VPS28-216ENST00000533806 C12orf56Q8IXR9 622 aa14.1□□□□□ -0.15
VPS28-216ENST00000533806 SPATA20Q8TB22 786 aa14.1□□□□□ -0.15
VPS28-216ENST00000533806 SAAL1Q96ER3 474 aa14.1□□□□□ -0.15
VPS28-216ENST00000533806 FAM213AQ9BRX8 229 aa14.1□□□□□ -0.15
VPS28-216ENST00000533806 TTPALQ9BTX7 342 aa14.1□□□□□ -0.15
VPS28-216ENST00000533806 COL25A1Q9BXS0 654 aaPredicted RBP14.1□□□□□ -0.15
VPS28-216ENST00000533806 EMILIN2Q9BXX0 1053 aa14.1□□□□□ -0.15
VPS28-216ENST00000533806 CD207Q9UJ71 328 aa14.1□□□□□ -0.15
VPS28-216ENST00000533806 UBQLN1Q9UMX0 589 aaKnown RBP14.1□□□□□ -0.15
VPS28-216ENST00000533806 C2CD2Q9Y426 696 aa14.1□□□□□ -0.15
VPS28-216ENST00000533806 C5orf42Q9H799 3197 aa14.1□□□□□ -0.15
VPS28-216ENST00000533806 ANO9A1A5B4 782 aa14.09□□□□□ -0.15
VPS28-216ENST00000533806 C2CD2LO14523 706 aa14.09□□□□□ -0.15
VPS28-216ENST00000533806 MBTPS2O43462 519 aa14.09□□□□□ -0.15
VPS28-216ENST00000533806 TBC1D4O60343 1298 aa14.09□□□□□ -0.15
VPS28-216ENST00000533806 GADD45BO75293 160 aaPredicted RBP14.09□□□□□ -0.15
VPS28-216ENST00000533806 IL18RAPO95256 599 aa14.09□□□□□ -0.15
VPS28-216ENST00000533806 PAPLNO95428 1278 aa14.09□□□□□ -0.15
VPS28-216ENST00000533806 NFICP08651 508 aa14.09□□□□□ -0.15
VPS28-216ENST00000533806 EPCAMP16422 314 aa14.09□□□□□ -0.15
VPS28-216ENST00000533806 BRCC3P46736 316 aa14.09□□□□□ -0.15
VPS28-216ENST00000533806 AARSP49588 968 aaKnown RBP eCLIP14.09□□□□□ -0.151e-6■■■■■ 36.1
VPS28-216ENST00000533806 MRPL58Q14197 206 aaKnown RBP14.09□□□□□ -0.15
VPS28-216ENST00000533806 KCNB1Q14721 858 aa14.09□□□□□ -0.15
VPS28-216ENST00000533806 KNOP1Q1ED39 458 aaKnown RBP14.09□□□□□ -0.15
VPS28-216ENST00000533806 TPRNQ4KMQ1 711 aa14.09□□□□□ -0.15
VPS28-216ENST00000533806 PTCRAQ6ISU1 281 aaPredicted RBP14.09□□□□□ -0.15
VPS28-216ENST00000533806 KANK3Q6NY19 840 aa14.09□□□□□ -0.15
VPS28-216ENST00000533806 PPFIBP1Q86W92 1011 aa14.09□□□□□ -0.15
VPS28-216ENST00000533806 BRSK2Q8IWQ3 736 aa14.09□□□□□ -0.15
VPS28-216ENST00000533806 EFCAB13Q8IY85 973 aa14.09□□□□□ -0.15
VPS28-216ENST00000533806 ELOA2Q8IYF1 753 aaPredicted RBP14.09□□□□□ -0.15
VPS28-216ENST00000533806 CXorf38Q8TB03 319 aa14.09□□□□□ -0.15
VPS28-216ENST00000533806 RIN2Q8WYP3 895 aaPredicted RBP14.09□□□□□ -0.15
VPS28-216ENST00000533806 SUSD6Q92537 303 aa14.09□□□□□ -0.15
VPS28-216ENST00000533806 SUSD3Q96L08 255 aa14.09□□□□□ -0.15
VPS28-216ENST00000533806 TIGD1Q96MW7 591 aa14.09□□□□□ -0.15
VPS28-216ENST00000533806 CLSTN3Q9BQT9 956 aa14.09□□□□□ -0.15
VPS28-216ENST00000533806 KCTD10Q9H3F6 313 aa14.09□□□□□ -0.15
VPS28-216ENST00000533806 PCIF1Q9H4Z3 704 aa14.09□□□□□ -0.15
VPS28-216ENST00000533806 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.09□□□□□ -0.15
VPS28-216ENST00000533806 EXOC1Q9NV70 894 aa14.09□□□□□ -0.15
VPS28-216ENST00000533806 GOLGA8IPA6NC78 632 aa14.08□□□□□ -0.16
VPS28-216ENST00000533806 GOLGA6L4A6NEF3 574 aa14.08□□□□□ -0.16
VPS28-216ENST00000533806 GOLGA8JA6NMD2 632 aa14.08□□□□□ -0.16
VPS28-216ENST00000533806 PIRO00625 290 aa14.08□□□□□ -0.16
VPS28-216ENST00000533806 PPEF2O14830 753 aa14.08□□□□□ -0.16
VPS28-216ENST00000533806 TRAPPC3O43617 180 aa14.08□□□□□ -0.16
VPS28-216ENST00000533806 HOXB8P17481 243 aaPredicted RBP14.08□□□□□ -0.16
VPS28-216ENST00000533806 GUCY2FP51841 1108 aa14.08□□□□□ -0.16
VPS28-216ENST00000533806 SMAD4Q13485 552 aaKnown RBP14.08□□□□□ -0.16
VPS28-216ENST00000533806 TMEM132DQ14C87 1099 aa14.08□□□□□ -0.16
VPS28-216ENST00000533806 SMAD2Q15796 467 aaKnown RBP14.08□□□□□ -0.16
VPS28-216ENST00000533806 KIAA1841Q6NSI8 718 aa14.08□□□□□ -0.16
VPS28-216ENST00000533806 LLGL2Q6P1M3 1020 aa14.08□□□□□ -0.16
VPS28-216ENST00000533806 ARMCX5Q6P1M9 558 aa14.08□□□□□ -0.16
VPS28-216ENST00000533806 PRSS55Q6UWB4 352 aaPredicted RBP14.08□□□□□ -0.16
VPS28-216ENST00000533806 CLEC17AQ6ZS10 378 aa14.08□□□□□ -0.16
VPS28-216ENST00000533806 EP400NLQ6ZTU2 488 aa14.08□□□□□ -0.16
VPS28-216ENST00000533806 NT5DC4Q86YG4 428 aa14.08□□□□□ -0.16
VPS28-216ENST00000533806 NELFCDQ8IXH7 590 aa14.08□□□□□ -0.16
VPS28-216ENST00000533806 GPD1LQ8N335 351 aa14.08□□□□□ -0.16
VPS28-216ENST00000533806 ADAMTS19Q8TE59 1207 aa14.08□□□□□ -0.16
VPS28-216ENST00000533806 CASP10Q92851 521 aa14.08□□□□□ -0.16
VPS28-216ENST00000533806 DMAC2Q9NW81 257 aa14.08□□□□□ -0.16
VPS28-216ENST00000533806 HSPBP1Q9NZL4 362 aa14.08□□□□□ -0.16
VPS28-216ENST00000533806 CGNQ9P2M7 1197 aaKnown RBP14.08□□□□□ -0.16
VPS28-216ENST00000533806 TRIP11Q15643 1979 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms