RNA–Protein interactions for RNA: ENST00000533209.5

SSBP3-214, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 4

Gene SSBP3, Length 552 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-214ENST00000533209 SOD2P04179 222 aa13□□□□□ -0.33
SSBP3-214ENST00000533209 CTSAP10619 480 aa13□□□□□ -0.33
SSBP3-214ENST00000533209 MYBPC2Q14324 1141 aa13□□□□□ -0.33
SSBP3-214ENST00000533209 NFIL3Q16649 462 aa13□□□□□ -0.33
SSBP3-214ENST00000533209 PLPP4Q5VZY2 271 aa13□□□□□ -0.33
SSBP3-214ENST00000533209 FUT10Q6P4F1 479 aa13□□□□□ -0.33
SSBP3-214ENST00000533209 MRPL43Q8N983 215 aaKnown RBP13□□□□□ -0.33
SSBP3-214ENST00000533209 RDH13Q8NBN7 331 aa13□□□□□ -0.33
SSBP3-214ENST00000533209 BEST2Q8NFU1 509 aa13□□□□□ -0.33
SSBP3-214ENST00000533209 AUTS2Q8WXX7 1259 aa13□□□□□ -0.33
SSBP3-214ENST00000533209 PPM1EQ8WY54 764 aa13□□□□□ -0.33
SSBP3-214ENST00000533209 NGRNQ9NPE2 291 aaKnown RBP13□□□□□ -0.33
SSBP3-214ENST00000533209 ENTPD7Q9NQZ7 604 aa13□□□□□ -0.33
SSBP3-214ENST00000533209 STK39Q9UEW8 545 aa13□□□□□ -0.33
SSBP3-214ENST00000533209 GTF3C5Q9Y5Q8 519 aaPredicted RBP13□□□□□ -0.33
SSBP3-214ENST00000533209 CITO14578 2027 aa13□□□□□ -0.33
SSBP3-214ENST00000533209 PRUNE2Q8WUY3 3088 aa12.99□□□□□ -0.33
SSBP3-214ENST00000533209 SF3B1O75533 1304 aaKnown RBP eCLIP12.99□□□□□ -0.332e-6■■■■■ 137.4
SSBP3-214ENST00000533209 PPEF2O14830 753 aa12.99□□□□□ -0.33
SSBP3-214ENST00000533209 CALUO43852 315 aaPredicted RBP12.99□□□□□ -0.33
SSBP3-214ENST00000533209 EXOC3O60645 756 aa12.99□□□□□ -0.33
SSBP3-214ENST00000533209 LILRB3O75022 631 aa12.99□□□□□ -0.33
SSBP3-214ENST00000533209 B3GAT3O94766 335 aa12.99□□□□□ -0.33
SSBP3-214ENST00000533209 CXCL14O95715 111 aa12.99□□□□□ -0.33
SSBP3-214ENST00000533209 CD44P16070 742 aaKnown RBP12.99□□□□□ -0.33
SSBP3-214ENST00000533209 CASP4P49662 377 aa12.99□□□□□ -0.33
SSBP3-214ENST00000533209 CYP24A1Q07973 514 aa12.99□□□□□ -0.33
SSBP3-214ENST00000533209 HYAL1Q12794 435 aa12.99□□□□□ -0.33
SSBP3-214ENST00000533209 SMC1AQ14683 1233 aaKnown RBP12.99□□□□□ -0.33
SSBP3-214ENST00000533209 CENPPQ6IPU0 288 aa12.99□□□□□ -0.33
SSBP3-214ENST00000533209 NT5DC4Q86YG4 428 aa12.99□□□□□ -0.33
SSBP3-214ENST00000533209 FAM84AQ96KN4 292 aa12.99□□□□□ -0.33
SSBP3-214ENST00000533209 B3GALT6Q96L58 329 aa12.99□□□□□ -0.33
SSBP3-214ENST00000533209 GZF1Q9H116 711 aaPredicted RBP12.99□□□□□ -0.33
SSBP3-214ENST00000533209 NUP62CLQ9H1M0 184 aa12.99□□□□□ -0.33
SSBP3-214ENST00000533209 CHST7Q9NS84 486 aa12.99□□□□□ -0.33
SSBP3-214ENST00000533209 IRAK3Q9Y616 596 aa12.99□□□□□ -0.33
SSBP3-214ENST00000533209 TRIP11Q15643 1979 aa12.99□□□□□ -0.33
SSBP3-214ENST00000533209 PTPRJQ12913 1337 aa12.98□□□□□ -0.33
SSBP3-214ENST00000533209 ANO9A1A5B4 782 aa12.98□□□□□ -0.33
SSBP3-214ENST00000533209 C2orf71A6NGG8 1288 aa12.98□□□□□ -0.33
SSBP3-214ENST00000533209 PPP1R3GB7ZBB8 358 aa12.98□□□□□ -0.33
SSBP3-214ENST00000533209 SLC34A2O95436 690 aa12.98□□□□□ -0.33
SSBP3-214ENST00000533209 MCM4P33991 863 aa12.98□□□□□ -0.33
SSBP3-214ENST00000533209 GTF2F1P35269 517 aaKnown RBP eCLIP12.98□□□□□ -0.331e-6■□□□□ 8.9
SSBP3-214ENST00000533209 BRCC3P46736 316 aa12.98□□□□□ -0.33
SSBP3-214ENST00000533209 PMS1P54277 932 aaKnown RBP12.98□□□□□ -0.33
SSBP3-214ENST00000533209 TFAMQ00059 246 aaKnown RBP12.98□□□□□ -0.33
SSBP3-214ENST00000533209 DSG1Q02413 1049 aa12.98□□□□□ -0.33
SSBP3-214ENST00000533209 ELAVL2Q12926 359 aaKnown RBP12.98□□□□□ -0.33
SSBP3-214ENST00000533209 PSMD6Q15008 389 aa12.98□□□□□ -0.33
SSBP3-214ENST00000533209 SURF1Q15526 300 aa12.98□□□□□ -0.33
SSBP3-214ENST00000533209 PTPN14Q15678 1187 aa12.98□□□□□ -0.33
SSBP3-214ENST00000533209 EDRF1Q3B7T1 1238 aa12.98□□□□□ -0.33
SSBP3-214ENST00000533209 USP41Q3LFD5 358 aa12.98□□□□□ -0.33
SSBP3-214ENST00000533209 KIAA0319Q5VV43 1072 aa12.98□□□□□ -0.33
SSBP3-214ENST00000533209 TRIML1Q8N9V2 468 aa12.98□□□□□ -0.33
SSBP3-214ENST00000533209 PLEKHO2Q8TD55 490 aa12.98□□□□□ -0.33
SSBP3-214ENST00000533209 MFSD14AQ96MC6 490 aa12.98□□□□□ -0.33
SSBP3-214ENST00000533209 DPP3Q9NY33 737 aa12.98□□□□□ -0.33
SSBP3-214ENST00000533209 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.97□□□□□ -0.33
SSBP3-214ENST00000533209 I3L4J1 428 aa12.97□□□□□ -0.33
SSBP3-214ENST00000533209 TULP1O00294 542 aaPredicted RBP12.97□□□□□ -0.33
SSBP3-214ENST00000533209 PIRO00625 290 aa12.97□□□□□ -0.33
SSBP3-214ENST00000533209 PER2O15055 1255 aa12.97□□□□□ -0.33
SSBP3-214ENST00000533209 URODP06132 367 aa12.97□□□□□ -0.33
SSBP3-214ENST00000533209 FGFR3P22607 806 aa12.97□□□□□ -0.33
SSBP3-214ENST00000533209 NR2F2P24468 414 aa12.97□□□□□ -0.33
SSBP3-214ENST00000533209 CCNE1P24864 410 aa12.97□□□□□ -0.33
SSBP3-214ENST00000533209 NRIP1P48552 1158 aa12.97□□□□□ -0.33
SSBP3-214ENST00000533209 GLUD2P49448 558 aa12.97□□□□□ -0.33
SSBP3-214ENST00000533209 AARSP49588 968 aaKnown RBP eCLIP12.97□□□□□ -0.339e-7■■■■■ 61.1
SSBP3-214ENST00000533209 BMS1Q14692 1282 aaKnown RBP12.97□□□□□ -0.33
SSBP3-214ENST00000533209 COL19A1Q14993 1142 aa12.97□□□□□ -0.33
SSBP3-214ENST00000533209 DUSP6Q16828 381 aa12.97□□□□□ -0.33
SSBP3-214ENST00000533209 RTP2Q5QGT7 225 aa12.97□□□□□ -0.33
SSBP3-214ENST00000533209 FAM171A1Q5VUB5 890 aa12.97□□□□□ -0.33
SSBP3-214ENST00000533209 C9orf57Q5W0N0 161 aa12.97□□□□□ -0.33
SSBP3-214ENST00000533209 LMBRD2Q68DH5 695 aaPredicted RBP12.97□□□□□ -0.33
SSBP3-214ENST00000533209 ANKRD40Q6AI12 368 aa12.97□□□□□ -0.33
SSBP3-214ENST00000533209 SCARA3Q6AZY7 606 aa12.97□□□□□ -0.33
SSBP3-214ENST00000533209 RBM23Q86U06 439 aaKnown RBP12.97□□□□□ -0.33
SSBP3-214ENST00000533209 GPR65Q8IYL9 337 aa12.97□□□□□ -0.33
SSBP3-214ENST00000533209 C1orf127Q8N9H9 656 aa12.97□□□□□ -0.33
SSBP3-214ENST00000533209 OR5B17Q8NGF7 314 aa12.97□□□□□ -0.33
SSBP3-214ENST00000533209 CXorf38Q8TB03 319 aa12.97□□□□□ -0.33
SSBP3-214ENST00000533209 CACTINQ8WUQ7 758 aaKnown RBP12.97□□□□□ -0.33
SSBP3-214ENST00000533209 PPP2R3CQ969Q6 453 aa12.97□□□□□ -0.33
SSBP3-214ENST00000533209 DHTKD1Q96HY7 919 aaPredicted RBP12.97□□□□□ -0.33
SSBP3-214ENST00000533209 POP1Q99575 1024 aaKnown RBP12.97□□□□□ -0.33
SSBP3-214ENST00000533209 TLE6Q9H808 572 aa12.97□□□□□ -0.33
SSBP3-214ENST00000533209 MRPL17Q9NRX2 175 aaKnown RBP12.97□□□□□ -0.33
SSBP3-214ENST00000533209 INTS13Q9NVM9 706 aa12.97□□□□□ -0.33
SSBP3-214ENST00000533209 ATG2AQ2TAZ0 1938 aa12.97□□□□□ -0.33
SSBP3-214ENST00000533209 PDCD11Q14690 1871 aaKnown RBP12.97□□□□□ -0.33
SSBP3-214ENST00000533209 TRIM49BA6NDI0 452 aa12.96□□□□□ -0.33
SSBP3-214ENST00000533209 C2CD2LO14523 706 aa12.96□□□□□ -0.33
SSBP3-214ENST00000533209 PSMA7O14818 248 aa12.96□□□□□ -0.33
SSBP3-214ENST00000533209 MAPK13O15264 365 aa12.96□□□□□ -0.33
SSBP3-214ENST00000533209 TRAPPC3O43617 180 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms