RNA–Protein interactions for RNA: ENST00000533012.1

TRAPPC4-211, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 817 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-211ENST00000533012 PLCB3Q01970 1234 aa12.16□□□□□ -0.46
TRAPPC4-211ENST00000533012 SOX4Q06945 474 aaPredicted RBP12.16□□□□□ -0.46
TRAPPC4-211ENST00000533012 ENPEPQ07075 957 aa12.16□□□□□ -0.46
TRAPPC4-211ENST00000533012 GPM6BQ13491 265 aa12.16□□□□□ -0.46
TRAPPC4-211ENST00000533012 UPP1Q16831 310 aa12.16□□□□□ -0.46
TRAPPC4-211ENST00000533012 EFCAB13Q8IY85 973 aa12.16□□□□□ -0.46
TRAPPC4-211ENST00000533012 SLC39A11Q8N1S5 342 aa12.16□□□□□ -0.46
TRAPPC4-211ENST00000533012 ENOX1Q8TC92 643 aaKnown RBP12.16□□□□□ -0.46
TRAPPC4-211ENST00000533012 TMEM169Q96HH4 297 aa12.16□□□□□ -0.46
TRAPPC4-211ENST00000533012 IGSF21Q96ID5 467 aa12.16□□□□□ -0.46
TRAPPC4-211ENST00000533012 ANKRD36BP1Q96IX9 119 aa12.16□□□□□ -0.46
TRAPPC4-211ENST00000533012 POP1Q99575 1024 aaKnown RBP12.16□□□□□ -0.46
TRAPPC4-211ENST00000533012 INTS13Q9NVM9 706 aa12.16□□□□□ -0.46
TRAPPC4-211ENST00000533012 TUBGCP4Q9UGJ1 667 aa12.16□□□□□ -0.46
TRAPPC4-211ENST00000533012 ARMCX3Q9UH62 379 aaPredicted RBP12.16□□□□□ -0.46
TRAPPC4-211ENST00000533012 PODXLO00592 558 aa12.15□□□□□ -0.46
TRAPPC4-211ENST00000533012 IKBKBO14920 756 aa12.15□□□□□ -0.46
TRAPPC4-211ENST00000533012 LRPAP1P30533 357 aa12.15□□□□□ -0.46
TRAPPC4-211ENST00000533012 CLDN10P78369 228 aa12.15□□□□□ -0.46
TRAPPC4-211ENST00000533012 BFSP1Q12934 665 aa12.15□□□□□ -0.46
TRAPPC4-211ENST00000533012 CCDC40Q4G0X9 1142 aa12.15□□□□□ -0.46
TRAPPC4-211ENST00000533012 SPRED2Q7Z698 418 aa12.15□□□□□ -0.46
TRAPPC4-211ENST00000533012 FRMD5Q7Z6J6 570 aa12.15□□□□□ -0.46
TRAPPC4-211ENST00000533012 CREBRFQ8IUR6 639 aa12.15□□□□□ -0.46
TRAPPC4-211ENST00000533012 RABGGTAQ92696 567 aa12.15□□□□□ -0.46
TRAPPC4-211ENST00000533012 BORCS6Q96GS4 357 aa12.15□□□□□ -0.46
TRAPPC4-211ENST00000533012 MED15Q96RN5 788 aa12.15□□□□□ -0.46
TRAPPC4-211ENST00000533012 CGRRF1Q99675 332 aa12.15□□□□□ -0.46
TRAPPC4-211ENST00000533012 PAAF1Q9BRP4 392 aa12.15□□□□□ -0.46
TRAPPC4-211ENST00000533012 DNAJC25Q9H1X3 360 aa12.15□□□□□ -0.46
TRAPPC4-211ENST00000533012 TTYH1Q9H313 450 aaPredicted RBP12.15□□□□□ -0.46
TRAPPC4-211ENST00000533012 GOLGA2P5Q9HBQ8 144 aa12.15□□□□□ -0.46
TRAPPC4-211ENST00000533012 ALG13Q9NP73 1137 aaKnown RBP12.15□□□□□ -0.46
TRAPPC4-211ENST00000533012 CACNG4Q9UBN1 327 aa12.15□□□□□ -0.46
TRAPPC4-211ENST00000533012 STK39Q9UEW8 545 aa12.15□□□□□ -0.46
TRAPPC4-211ENST00000533012 COL4A6Q14031 1691 aa12.15□□□□□ -0.46
TRAPPC4-211ENST00000533012 LAMA3Q16787 3333 aa12.15□□□□□ -0.46
TRAPPC4-211ENST00000533012 LRRIQ3A6PVS8 624 aaPredicted RBP12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 TRAPPC3O43617 180 aa12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 STX10O60499 249 aa12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 PHACTR2O75167 634 aa12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 KRT19P08727 400 aa12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 PAX3P23760 479 aa12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 FXR1P51114 621 aaKnown RBP eCLIP12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 GUCY2FP51841 1108 aa12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 DLG4P78352 724 aa12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 RBP5P82980 135 aa12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 UBE3AQ05086 875 aa12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 BMS1Q14692 1282 aaKnown RBP12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 GRIN2CQ14957 1233 aa12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 ANO6Q4KMQ2 910 aa12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 C9orf57Q5W0N0 161 aa12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 LMBRD2Q68DH5 695 aaPredicted RBP12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 TRAPPC11Q7Z392 1133 aa12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 DDX53Q86TM3 631 aaKnown RBP12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 OR5B17Q8NGF7 314 aa12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 SPPL3Q8TCT6 385 aa12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 PLEKHO2Q8TD55 490 aa12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 ZNF516Q92618 1163 aa12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 FAM161BQ96MY7 647 aa12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 MTMR12Q9C0I1 747 aa12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 GZF1Q9H116 711 aaPredicted RBP12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 THAP9Q9H5L6 903 aa12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 MARCH5Q9NX47 278 aa12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 MAGEC2Q9UBF1 373 aaPredicted RBP12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 ADAM28Q9UKQ2 775 aa12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 ITGA11Q9UKX5 1188 aa12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 AGAP1Q9UPQ3 857 aa12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 LZTS1Q9Y250 596 aa12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 NUB1Q9Y5A7 615 aa12.14□□□□□ -0.47
TRAPPC4-211ENST00000533012 PTPRSQ13332 1948 aa12.13□□□□□ -0.47
TRAPPC4-211ENST00000533012 ANO9A1A5B4 782 aa12.13□□□□□ -0.47
TRAPPC4-211ENST00000533012 TMEM189-UBE2V1I3L0A0 370 aa12.13□□□□□ -0.47
TRAPPC4-211ENST00000533012 RFXAPO00287 272 aa12.13□□□□□ -0.47
TRAPPC4-211ENST00000533012 PIRO00625 290 aa12.13□□□□□ -0.47
TRAPPC4-211ENST00000533012 KIF4AO95239 1232 aa12.13□□□□□ -0.47
TRAPPC4-211ENST00000533012 ITGB3P05106 788 aa12.13□□□□□ -0.47
TRAPPC4-211ENST00000533012 ITGB1P05556 798 aa12.13□□□□□ -0.47
TRAPPC4-211ENST00000533012 POLR2BP30876 1174 aaKnown RBP12.13□□□□□ -0.47
TRAPPC4-211ENST00000533012 GTF2H1P32780 548 aa12.13□□□□□ -0.47
TRAPPC4-211ENST00000533012 MCCD1P59942 119 aaPredicted RBP12.13□□□□□ -0.47
TRAPPC4-211ENST00000533012 ELAVL2Q12926 359 aaKnown RBP12.13□□□□□ -0.47
TRAPPC4-211ENST00000533012 BIRC3Q13489 604 aa12.13□□□□□ -0.47
TRAPPC4-211ENST00000533012 TRPC3Q13507 836 aa12.13□□□□□ -0.47
TRAPPC4-211ENST00000533012 PTPROQ16827 1216 aa12.13□□□□□ -0.47
TRAPPC4-211ENST00000533012 TCERG1LQ5VWI1 586 aa12.13□□□□□ -0.47
TRAPPC4-211ENST00000533012 C11orf57Q6ZUT1 292 aaPredicted RBP12.13□□□□□ -0.47
TRAPPC4-211ENST00000533012 TMEM173Q86WV6 379 aaPredicted RBP12.13□□□□□ -0.47
TRAPPC4-211ENST00000533012 FAM114A1Q8IWE2 563 aa12.13□□□□□ -0.47
TRAPPC4-211ENST00000533012 DEFB123Q8N688 67 aa12.13□□□□□ -0.47
TRAPPC4-211ENST00000533012 C1orf127Q8N9H9 656 aa12.13□□□□□ -0.47
TRAPPC4-211ENST00000533012 MICAL1Q8TDZ2 1067 aa12.13□□□□□ -0.47
TRAPPC4-211ENST00000533012 HASPINQ8TF76 798 aa12.13□□□□□ -0.47
TRAPPC4-211ENST00000533012 POF1BQ8WVV4 589 aa12.13□□□□□ -0.47
TRAPPC4-211ENST00000533012 FUCA2Q9BTY2 467 aa12.13□□□□□ -0.47
TRAPPC4-211ENST00000533012 LMAN2LQ9H0V9 348 aa12.13□□□□□ -0.47
TRAPPC4-211ENST00000533012 PRDM12Q9H4Q4 367 aa12.13□□□□□ -0.47
TRAPPC4-211ENST00000533012 SF3B1O75533 1304 aaKnown RBP eCLIP12.12□□□□□ -0.473e-6■■■■■ 137.9
TRAPPC4-211ENST00000533012 PTPRJQ12913 1337 aa12.12□□□□□ -0.47
TRAPPC4-211ENST00000533012 EPOPA6NHQ4 379 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms