RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 MTA3Q9BTC8 594 aa9.18□□□□□ -0.94
CD44-232ENST00000531118 TTPALQ9BTX7 342 aa9.18□□□□□ -0.94
CD44-232ENST00000531118 TRMT61BQ9BVS5 477 aaKnown RBP9.18□□□□□ -0.94
CD44-232ENST00000531118 APOL6Q9BWW8 343 aa9.18□□□□□ -0.94
CD44-232ENST00000531118 NIFKQ9BYG3 293 aaKnown RBP9.18□□□□□ -0.94
CD44-232ENST00000531118 GLT8D2Q9H1C3 349 aa9.18□□□□□ -0.94
CD44-232ENST00000531118 UNC45AQ9H3U1 944 aa9.18□□□□□ -0.94
CD44-232ENST00000531118 NXF3Q9H4D5 531 aaKnown RBP9.18□□□□□ -0.94
CD44-232ENST00000531118 OSBPL3Q9H4L5 887 aa9.18□□□□□ -0.94
CD44-232ENST00000531118 ZNF334Q9HCZ1 680 aaPredicted RBP9.18□□□□□ -0.94
CD44-232ENST00000531118 TRPV5Q9NQA5 729 aa9.18□□□□□ -0.94
CD44-232ENST00000531118 AVENQ9NQS1 362 aaPredicted RBP9.18□□□□□ -0.94
CD44-232ENST00000531118 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.18□□□□□ -0.94
CD44-232ENST00000531118 VPS45Q9NRW7 570 aa9.18□□□□□ -0.94
CD44-232ENST00000531118 NEUROG3Q9Y4Z2 214 aa9.18□□□□□ -0.94
CD44-232ENST00000531118 HES2Q9Y543 173 aa9.18□□□□□ -0.94
CD44-232ENST00000531118 MYO16Q9Y6X6 1858 aa9.18□□□□□ -0.94
CD44-232ENST00000531118 FREM2Q5SZK8 3169 aa9.17□□□□□ -0.94
CD44-232ENST00000531118 SMCO2A6NFE2 343 aa9.17□□□□□ -0.94
CD44-232ENST00000531118 ARNTLO00327 626 aa9.17□□□□□ -0.94
CD44-232ENST00000531118 TSPAN1O60635 241 aa9.17□□□□□ -0.94
CD44-232ENST00000531118 MAFO75444 373 aaPredicted RBP9.17□□□□□ -0.94
CD44-232ENST00000531118 RPP40O75818 363 aaKnown RBP9.17□□□□□ -0.94
CD44-232ENST00000531118 STBD1O95210 358 aa9.17□□□□□ -0.94
CD44-232ENST00000531118 KIF4AO95239 1232 aa9.17□□□□□ -0.94
CD44-232ENST00000531118 CCDC192P0DO97 292 aa9.17□□□□□ -0.94
CD44-232ENST00000531118 GDI1P31150 447 aa9.17□□□□□ -0.94
CD44-232ENST00000531118 SFNP31947 248 aa9.17□□□□□ -0.94
CD44-232ENST00000531118 PTH1RQ03431 593 aa9.17□□□□□ -0.94
CD44-232ENST00000531118 FAM78AQ5JUQ0 283 aa9.17□□□□□ -0.94
CD44-232ENST00000531118 PRSS36Q5K4E3 855 aa9.17□□□□□ -0.94
CD44-232ENST00000531118 PLA2G4FQ68DD2 849 aa9.17□□□□□ -0.94
CD44-232ENST00000531118 SRGAP1Q7Z6B7 1085 aa9.17□□□□□ -0.94
CD44-232ENST00000531118 PDZD3Q86UT5 571 aa9.17□□□□□ -0.94
CD44-232ENST00000531118 LNX1Q8TBB1 728 aaPredicted RBP9.17□□□□□ -0.94
CD44-232ENST00000531118 DEPDC1BQ8WUY9 529 aa9.17□□□□□ -0.94
CD44-232ENST00000531118 CCDC51Q96ER9 411 aa9.17□□□□□ -0.94
CD44-232ENST00000531118 ASB16Q96NS5 453 aa9.17□□□□□ -0.94
CD44-232ENST00000531118 ZFP14Q9HCL3 533 aa9.17□□□□□ -0.94
CD44-232ENST00000531118 BARHL2Q9NY43 387 aa9.17□□□□□ -0.94
CD44-232ENST00000531118 TRIP11Q15643 1979 aa9.17□□□□□ -0.94
CD44-232ENST00000531118 THADAQ6YHU6 1953 aa9.16□□□□□ -0.94
CD44-232ENST00000531118 WDR27A2RRH5 827 aa9.16□□□□□ -0.94
CD44-232ENST00000531118 C4orf47A7E2U8 309 aa9.16□□□□□ -0.94
CD44-232ENST00000531118 CFAP99D6REC4 459 aa9.16□□□□□ -0.94
CD44-232ENST00000531118 MSH4O15457 936 aa9.16□□□□□ -0.94
CD44-232ENST00000531118 HYAL3O43820 417 aaPredicted RBP9.16□□□□□ -0.94
CD44-232ENST00000531118 GAS7O60861 476 aa9.16□□□□□ -0.94
CD44-232ENST00000531118 AKAP3O75969 853 aa9.16□□□□□ -0.94
CD44-232ENST00000531118 ERLIN2O94905 339 aa9.16□□□□□ -0.94
CD44-232ENST00000531118 PSMC3P17980 439 aa9.16□□□□□ -0.94
CD44-232ENST00000531118 CSRP1P21291 193 aaKnown RBP9.16□□□□□ -0.94
CD44-232ENST00000531118 SOX9P48436 509 aa9.16□□□□□ -0.94
CD44-232ENST00000531118 HDAC1Q13547 482 aaPredicted RBP9.16□□□□□ -0.94
CD44-232ENST00000531118 UVSSAQ2YD98 709 aa9.16□□□□□ -0.94
CD44-232ENST00000531118 FAM171A1Q5VUB5 890 aa9.16□□□□□ -0.94
CD44-232ENST00000531118 DAB2IPQ5VWQ8 1189 aa9.16□□□□□ -0.94
CD44-232ENST00000531118 MIER3Q7Z3K6 550 aa9.16□□□□□ -0.94
CD44-232ENST00000531118 CEP57Q86XR8 500 aa9.16□□□□□ -0.94
CD44-232ENST00000531118 GSTCDQ8NEC7 633 aa9.16□□□□□ -0.94
CD44-232ENST00000531118 TCEAL4Q96EI5 215 aa9.16□□□□□ -0.94
CD44-232ENST00000531118 JPH2Q9BR39 696 aaPredicted RBP9.16□□□□□ -0.94
CD44-232ENST00000531118 PAAF1Q9BRP4 392 aa9.16□□□□□ -0.94
CD44-232ENST00000531118 TEKT3Q9BXF9 490 aa9.16□□□□□ -0.94
CD44-232ENST00000531118 PRDM9Q9NQV7 894 aa9.16□□□□□ -0.94
CD44-232ENST00000531118 GIT1Q9Y2X7 761 aa9.16□□□□□ -0.94
CD44-232ENST00000531118 GPSM3Q9Y4H4 160 aa9.16□□□□□ -0.94
CD44-232ENST00000531118 SLC12A7Q9Y666 1083 aa9.16□□□□□ -0.94
CD44-232ENST00000531118 TNRC6BQ9UPQ9 1833 aaKnown RBP9.16□□□□□ -0.94
CD44-232ENST00000531118 PI4KAP42356 2102 aa9.16□□□□□ -0.94
CD44-232ENST00000531118 ABCA7Q8IZY2 2146 aa9.16□□□□□ -0.94
CD44-232ENST00000531118 LNP1A1A4G5 178 aa9.15□□□□□ -0.94
CD44-232ENST00000531118 CASTOR2A6NHX0 329 aa9.15□□□□□ -0.94
CD44-232ENST00000531118 SLC38A8A6NNN8 435 aa9.15□□□□□ -0.94
CD44-232ENST00000531118 ZNF263O14978 683 aa9.15□□□□□ -0.94
CD44-232ENST00000531118 ADAMTS3O15072 1205 aa9.15□□□□□ -0.94
CD44-232ENST00000531118 TADA2AO75478 443 aa9.15□□□□□ -0.94
CD44-232ENST00000531118 CEACAM1P13688 526 aa9.15□□□□□ -0.94
CD44-232ENST00000531118 CIITAP33076 1130 aa9.15□□□□□ -0.94
CD44-232ENST00000531118 RFC5P40937 340 aa9.15□□□□□ -0.94
CD44-232ENST00000531118 CCR2P41597 374 aa9.15□□□□□ -0.94
CD44-232ENST00000531118 LIFRP42702 1097 aa9.15□□□□□ -0.94
CD44-232ENST00000531118 PXNP49023 591 aaPredicted RBP9.15□□□□□ -0.94
CD44-232ENST00000531118 TUSC3Q13454 348 aa9.15□□□□□ -0.94
CD44-232ENST00000531118 RAB33AQ14088 237 aa9.15□□□□□ -0.94
CD44-232ENST00000531118 DGKKQ5KSL6 1271 aa9.15□□□□□ -0.94
CD44-232ENST00000531118 LRCH2Q5VUJ6 765 aa9.15□□□□□ -0.94
CD44-232ENST00000531118 NOTUMQ6P988 496 aa9.15□□□□□ -0.94
CD44-232ENST00000531118 PDXDC1Q6P996 788 aa9.15□□□□□ -0.94
CD44-232ENST00000531118 C1orf228Q6PIY5 440 aa9.15□□□□□ -0.94
CD44-232ENST00000531118 TXNDC11Q6PKC3 985 aa9.15□□□□□ -0.94
CD44-232ENST00000531118 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.15□□□□□ -0.94
CD44-232ENST00000531118 PROSER1Q86XN7 944 aa9.15□□□□□ -0.94
CD44-232ENST00000531118 REXO1Q8N1G1 1221 aaKnown RBP9.15□□□□□ -0.94
CD44-232ENST00000531118 FANCBQ8NB91 859 aa9.15□□□□□ -0.94
CD44-232ENST00000531118 RDM1Q8NG50 284 aa9.15□□□□□ -0.94
CD44-232ENST00000531118 EXOC6Q8TAG9 804 aa9.15□□□□□ -0.94
CD44-232ENST00000531118 PSPC1Q8WXF1 523 aaKnown RBP9.15□□□□□ -0.94
CD44-232ENST00000531118 SMARCD2Q92925 531 aa9.15□□□□□ -0.94
CD44-232ENST00000531118 GJA10Q969M2 543 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms