RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 KCTD17Q8N5Z5 321 aa12.43□□□□□ -0.42
VPS28-214ENST00000531032 SPIRE2Q8WWL2 714 aa12.43□□□□□ -0.42
VPS28-214ENST00000531032 SHDQ96IW2 340 aa12.43□□□□□ -0.42
VPS28-214ENST00000531032 ACAP3Q96P50 834 aa12.43□□□□□ -0.42
VPS28-214ENST00000531032 DDX23Q9BUQ8 820 aaKnown RBP12.43□□□□□ -0.42
VPS28-214ENST00000531032 FOXQ1Q9C009 403 aa12.43□□□□□ -0.42
VPS28-214ENST00000531032 SEMA4AQ9H3S1 761 aa12.43□□□□□ -0.42
VPS28-214ENST00000531032 AVENQ9NQS1 362 aaPredicted RBP12.43□□□□□ -0.42
VPS28-214ENST00000531032 MIA3Q5JRA6 1907 aa12.43□□□□□ -0.42
VPS28-214ENST00000531032 COL4A3Q01955 1670 aa12.42□□□□□ -0.42
VPS28-214ENST00000531032 FANCMQ8IYD8 2048 aa12.42□□□□□ -0.42
VPS28-214ENST00000531032 MYH11P35749 1972 aa12.42□□□□□ -0.42
VPS28-214ENST00000531032 WDR27A2RRH5 827 aa12.42□□□□□ -0.42
VPS28-214ENST00000531032 SLC16A4O15374 487 aa12.42□□□□□ -0.42
VPS28-214ENST00000531032 TOM1L1O75674 476 aa12.42□□□□□ -0.42
VPS28-214ENST00000531032 RHOP08100 348 aa12.42□□□□□ -0.42
VPS28-214ENST00000531032 PLS3P13797 630 aa12.42□□□□□ -0.42
VPS28-214ENST00000531032 GLULP15104 373 aa12.42□□□□□ -0.42
VPS28-214ENST00000531032 RPL9P32969 192 aaKnown RBP12.42□□□□□ -0.42
VPS28-214ENST00000531032 PFKPQ01813 784 aa12.42□□□□□ -0.42
VPS28-214ENST00000531032 PRKCQQ04759 706 aa12.42□□□□□ -0.42
VPS28-214ENST00000531032 MRPL58Q14197 206 aaKnown RBP12.42□□□□□ -0.42
VPS28-214ENST00000531032 NOLC1Q14978 699 aaKnown RBP eCLIP12.42□□□□□ -0.42
VPS28-214ENST00000531032 MLF2Q15773 248 aaPredicted RBP12.42□□□□□ -0.42
VPS28-214ENST00000531032 SLC5A9Q2M3M2 681 aa12.42□□□□□ -0.42
VPS28-214ENST00000531032 C8orf34Q49A92 452 aa12.42□□□□□ -0.42
VPS28-214ENST00000531032 RILPL1Q5EBL4 403 aa12.42□□□□□ -0.42
VPS28-214ENST00000531032 C1orf210Q8IVY1 113 aa12.42□□□□□ -0.42
VPS28-214ENST00000531032 TMEM161BQ8NDZ6 487 aa12.42□□□□□ -0.42
VPS28-214ENST00000531032 C18orf25Q96B23 403 aaPredicted RBP12.42□□□□□ -0.42
VPS28-214ENST00000531032 KXD1Q9BQD3 176 aa12.42□□□□□ -0.42
VPS28-214ENST00000531032 TCHPQ9BT92 498 aa12.42□□□□□ -0.42
VPS28-214ENST00000531032 GDE1Q9NZC3 331 aa12.42□□□□□ -0.42
VPS28-214ENST00000531032 MRPS23Q9Y3D9 190 aaKnown RBP12.42□□□□□ -0.42
VPS28-214ENST00000531032 ZNF292O60281 2723 aa12.42□□□□□ -0.42
VPS28-214ENST00000531032 DCHS1Q96JQ0 3298 aa12.42□□□□□ -0.42
VPS28-214ENST00000531032 KANSL1LA0AUZ9 987 aa12.41□□□□□ -0.42
VPS28-214ENST00000531032 SFI1A8K8P3 1242 aa12.41□□□□□ -0.42
VPS28-214ENST00000531032 H7C4K7 107 aa12.41□□□□□ -0.42
VPS28-214ENST00000531032 ECI2O75521 394 aa12.41□□□□□ -0.42
VPS28-214ENST00000531032 MAPTP10636 758 aaKnown RBP12.41□□□□□ -0.42
VPS28-214ENST00000531032 ATF2P15336 505 aa12.41□□□□□ -0.42
VPS28-214ENST00000531032 STRN3Q13033 797 aa12.41□□□□□ -0.42
VPS28-214ENST00000531032 SNW1Q13573 536 aaKnown RBP12.41□□□□□ -0.42
VPS28-214ENST00000531032 SLC10A6Q3KNW5 377 aa12.41□□□□□ -0.42
VPS28-214ENST00000531032 SLC44A4Q53GD3 710 aa12.41□□□□□ -0.42
VPS28-214ENST00000531032 ZPBP2Q6X784 338 aa12.41□□□□□ -0.42
VPS28-214ENST00000531032 TCEAL8Q8IYN2 117 aa12.41□□□□□ -0.42
VPS28-214ENST00000531032 SYT2Q8N9I0 419 aaPredicted RBP12.41□□□□□ -0.42
VPS28-214ENST00000531032 ING5Q8WYH8 240 aa12.41□□□□□ -0.42
VPS28-214ENST00000531032 KCNN1Q92952 543 aa12.41□□□□□ -0.42
VPS28-214ENST00000531032 ZBTB45Q96K62 511 aaPredicted RBP12.41□□□□□ -0.42
VPS28-214ENST00000531032 SUSD3Q96L08 255 aa12.41□□□□□ -0.42
VPS28-214ENST00000531032 PNMA5Q96PV4 448 aa12.41□□□□□ -0.42
VPS28-214ENST00000531032 KCND2Q9NZV8 630 aa12.41□□□□□ -0.42
VPS28-214ENST00000531032 ANKFY1Q9P2R3 1169 aa12.41□□□□□ -0.42
VPS28-214ENST00000531032 KCNG1Q9UIX4 513 aa12.41□□□□□ -0.42
VPS28-214ENST00000531032 FBXL5Q9UKA1 691 aa12.41□□□□□ -0.42
VPS28-214ENST00000531032 KIF3AQ9Y496 699 aa12.41□□□□□ -0.42
VPS28-214ENST00000531032 NUB1Q9Y5A7 615 aa12.41□□□□□ -0.42
VPS28-214ENST00000531032 PATJQ8NI35 1801 aa12.41□□□□□ -0.42
VPS28-214ENST00000531032 WDR87Q6ZQQ6 2873 aa12.4□□□□□ -0.42
VPS28-214ENST00000531032 CACNA1IQ9P0X4 2223 aa12.4□□□□□ -0.42
VPS28-214ENST00000531032 PRRG1O14668 218 aa12.4□□□□□ -0.42
VPS28-214ENST00000531032 LRRN2O75325 713 aa12.4□□□□□ -0.42
VPS28-214ENST00000531032 LMNAP02545 664 aaKnown RBP12.4□□□□□ -0.42
VPS28-214ENST00000531032 LRG1P02750 347 aa12.4□□□□□ -0.42
VPS28-214ENST00000531032 SP9P0CG40 484 aa12.4□□□□□ -0.42
VPS28-214ENST00000531032 HARSP12081 509 aaKnown RBP12.4□□□□□ -0.42
VPS28-214ENST00000531032 CEBPBP17676 345 aa12.4□□□□□ -0.42
VPS28-214ENST00000531032 PTPN2P17706 415 aa12.4□□□□□ -0.42
VPS28-214ENST00000531032 ELF1P32519 619 aa12.4□□□□□ -0.42
VPS28-214ENST00000531032 SMTNP53814 917 aa12.4□□□□□ -0.42
VPS28-214ENST00000531032 SLC12A3P55017 1021 aa12.4□□□□□ -0.42
VPS28-214ENST00000531032 MCL1Q07820 350 aa12.4□□□□□ -0.42
VPS28-214ENST00000531032 RAD51AP2Q09MP3 1159 aa12.4□□□□□ -0.42
VPS28-214ENST00000531032 ZRSR1Q15695 479 aaKnown RBP12.4□□□□□ -0.42
VPS28-214ENST00000531032 TMEM119Q4V9L6 283 aa12.4□□□□□ -0.42
VPS28-214ENST00000531032 PRSS36Q5K4E3 855 aa12.4□□□□□ -0.42
VPS28-214ENST00000531032 TPGS2Q68CL5 300 aa12.4□□□□□ -0.42
VPS28-214ENST00000531032 ZC3H14Q6PJT7 736 aaKnown RBP12.4□□□□□ -0.42
VPS28-214ENST00000531032 POTEHQ6S545 545 aa12.4□□□□□ -0.42
VPS28-214ENST00000531032 MAML2Q8IZL2 1156 aaPredicted RBP12.4□□□□□ -0.42
VPS28-214ENST00000531032 OSBPL6Q9BZF3 934 aa12.4□□□□□ -0.42
VPS28-214ENST00000531032 UPF2Q9HAU5 1272 aaKnown RBP12.4□□□□□ -0.42
VPS28-214ENST00000531032 INSL5Q9Y5Q6 135 aa12.4□□□□□ -0.42
VPS28-214ENST00000531032 R4GN57 208 aa12.4□□□□□ -0.42
VPS28-214ENST00000531032 CLDN3O15551 220 aa12.39□□□□□ -0.43
VPS28-214ENST00000531032 MICAL2O94851 1124 aa12.39□□□□□ -0.43
VPS28-214ENST00000531032 SEC24AO95486 1093 aa12.39□□□□□ -0.43
VPS28-214ENST00000531032 MCM4P33991 863 aa12.39□□□□□ -0.43
VPS28-214ENST00000531032 FOXK2Q01167 660 aa12.39□□□□□ -0.43
VPS28-214ENST00000531032 RABEP1Q15276 862 aa12.39□□□□□ -0.43
VPS28-214ENST00000531032 CTXN3Q4LDR2 81 aa12.39□□□□□ -0.43
VPS28-214ENST00000531032 SEZ6Q53EL9 994 aa12.39□□□□□ -0.43
VPS28-214ENST00000531032 ARL6IP4Q66PJ3 421 aaKnown RBP12.39□□□□□ -0.43
VPS28-214ENST00000531032 MCTP1Q6DN14 999 aa12.39□□□□□ -0.43
VPS28-214ENST00000531032 ZNF280DQ6N043 979 aa12.39□□□□□ -0.43
VPS28-214ENST00000531032 APPL2Q8NEU8 664 aa12.39□□□□□ -0.43
VPS28-214ENST00000531032 DDX12PQ92771 950 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms