RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 KINO60870 393 aaKnown RBP25.85■■□□□ 1.73
CPSF1-202ENST00000527827 PTPN2P17706 415 aa25.85■■□□□ 1.73
CPSF1-202ENST00000527827 ZNF568Q3ZCX4 644 aa25.85■■□□□ 1.73
CPSF1-202ENST00000527827 TANGO2Q6ICL3 276 aa25.85■■□□□ 1.73
CPSF1-202ENST00000527827 LLPHQ9BRT6 129 aaKnown RBP25.85■■□□□ 1.73
CPSF1-202ENST00000527827 TARS2Q9BW92 718 aaKnown RBP25.85■■□□□ 1.73
CPSF1-202ENST00000527827 TMEM134Q9H6X4 195 aa25.85■■□□□ 1.73
CPSF1-202ENST00000527827 ARHGAP28Q9P2N2 729 aa25.85■■□□□ 1.73
CPSF1-202ENST00000527827 LIMCH1Q9UPQ0 1083 aa25.85■■□□□ 1.73
CPSF1-202ENST00000527827 SHISA7A6NL88 538 aa25.84■■□□□ 1.73
CPSF1-202ENST00000527827 TARSP26639 723 aaKnown RBP25.84■■□□□ 1.73
CPSF1-202ENST00000527827 MAGEA9P43362 315 aa25.84■■□□□ 1.73
CPSF1-202ENST00000527827 TRAPPC10P48553 1259 aa25.84■■□□□ 1.73
CPSF1-202ENST00000527827 PDIA5Q14554 519 aa25.84■■□□□ 1.73
CPSF1-202ENST00000527827 PDCD11Q14690 1871 aaKnown RBP25.84■■□□□ 1.73
CPSF1-202ENST00000527827 PRSS36Q5K4E3 855 aa25.84■■□□□ 1.73
CPSF1-202ENST00000527827 TPRG1Q6ZUI0 275 aa25.84■■□□□ 1.73
CPSF1-202ENST00000527827 IGSF22Q8N9C0 903 aa25.84■■□□□ 1.73
CPSF1-202ENST00000527827 CLDN23Q96B33 292 aa25.84■■□□□ 1.73
CPSF1-202ENST00000527827 MRPL4Q9BYD3 311 aaKnown RBP25.84■■□□□ 1.73
CPSF1-202ENST00000527827 SLC38A7Q9NVC3 462 aa25.84■■□□□ 1.73
CPSF1-202ENST00000527827 DNAH14Q0VDD8 3507 aa25.84■■□□□ 1.73
CPSF1-202ENST00000527827 E9PMD0 336 aa25.83■■□□□ 1.73
CPSF1-202ENST00000527827 ABLIM1O14639 778 aa25.83■■□□□ 1.73
CPSF1-202ENST00000527827 MEFVO15553 781 aaPredicted RBP25.83■■□□□ 1.73
CPSF1-202ENST00000527827 HIP1RO75146 1068 aa25.83■■□□□ 1.73
CPSF1-202ENST00000527827 SEC24AO95486 1093 aa25.83■■□□□ 1.73
CPSF1-202ENST00000527827 LRG1P02750 347 aa25.83■■□□□ 1.73
CPSF1-202ENST00000527827 ATF2P15336 505 aa25.83■■□□□ 1.73
CPSF1-202ENST00000527827 KCNE1P15382 129 aa25.83■■□□□ 1.73
CPSF1-202ENST00000527827 PROZP22891 400 aa25.83■■□□□ 1.73
CPSF1-202ENST00000527827 FCARP24071 287 aa25.83■■□□□ 1.73
CPSF1-202ENST00000527827 CSTF1Q05048 431 aaKnown RBP25.83■■□□□ 1.73
CPSF1-202ENST00000527827 MRPL58Q14197 206 aaKnown RBP25.83■■□□□ 1.73
CPSF1-202ENST00000527827 ZBTB41Q5SVQ8 909 aa25.83■■□□□ 1.73
CPSF1-202ENST00000527827 TCEAL8Q8IYN2 117 aa25.83■■□□□ 1.73
CPSF1-202ENST00000527827 SNX29Q8TEQ0 813 aa25.83■■□□□ 1.73
CPSF1-202ENST00000527827 HEBP1Q9NRV9 189 aa25.83■■□□□ 1.73
CPSF1-202ENST00000527827 MED19A0JLT2 244 aaPredicted RBP25.82■■□□□ 1.72
CPSF1-202ENST00000527827 PRRG1O14668 218 aa25.82■■□□□ 1.72
CPSF1-202ENST00000527827 SYN3O14994 580 aa25.82■■□□□ 1.72
CPSF1-202ENST00000527827 ELF1P32519 619 aa25.82■■□□□ 1.72
CPSF1-202ENST00000527827 ARPP19P56211 112 aa25.82■■□□□ 1.72
CPSF1-202ENST00000527827 MAPK7Q13164 816 aa25.82■■□□□ 1.72
CPSF1-202ENST00000527827 FZD5Q13467 585 aa25.82■■□□□ 1.72
CPSF1-202ENST00000527827 C18orf25Q96B23 403 aaPredicted RBP25.82■■□□□ 1.72
CPSF1-202ENST00000527827 ELSPBP1Q96BH3 223 aa25.82■■□□□ 1.72
CPSF1-202ENST00000527827 TCEAL4Q96EI5 215 aa25.82■■□□□ 1.72
CPSF1-202ENST00000527827 ACAP3Q96P50 834 aa25.82■■□□□ 1.72
CPSF1-202ENST00000527827 NELL2Q99435 816 aa25.82■■□□□ 1.72
CPSF1-202ENST00000527827 CORO1BQ9BR76 489 aa25.82■■□□□ 1.72
CPSF1-202ENST00000527827 RUSC1Q9BVN2 902 aa25.82■■□□□ 1.72
CPSF1-202ENST00000527827 CNTN3Q9P232 1028 aa25.82■■□□□ 1.72
CPSF1-202ENST00000527827 FBXL5Q9UKA1 691 aa25.82■■□□□ 1.72
CPSF1-202ENST00000527827 COL4A2P08572 1712 aa25.81■■□□□ 1.72
CPSF1-202ENST00000527827 NRG2O14511 850 aaPredicted RBP25.81■■□□□ 1.72
CPSF1-202ENST00000527827 SPTLC1O15269 473 aa25.81■■□□□ 1.72
CPSF1-202ENST00000527827 SEC24BO95487 1268 aa25.81■■□□□ 1.72
CPSF1-202ENST00000527827 MCF2P10911 925 aa25.81■■□□□ 1.72
CPSF1-202ENST00000527827 TOB1P50616 345 aaPredicted RBP25.81■■□□□ 1.72
CPSF1-202ENST00000527827 PTGDRQ13258 359 aa25.81■■□□□ 1.72
CPSF1-202ENST00000527827 DMP1Q13316 513 aaPredicted RBP25.81■■□□□ 1.72
CPSF1-202ENST00000527827 GNL2Q13823 731 aaKnown RBP25.81■■□□□ 1.72
CPSF1-202ENST00000527827 DGLUCYQ7Z3D6 616 aa25.81■■□□□ 1.72
CPSF1-202ENST00000527827 BORCS6Q96GS4 357 aa25.81■■□□□ 1.72
CPSF1-202ENST00000527827 CYP4F11Q9HBI6 524 aa25.81■■□□□ 1.72
CPSF1-202ENST00000527827 KMT5AQ9NQR1 393 aa25.81■■□□□ 1.72
CPSF1-202ENST00000527827 NOL7Q9UMY1 257 aaKnown RBP25.81■■□□□ 1.72
CPSF1-202ENST00000527827 DNM3Q9UQ16 869 aa25.81■■□□□ 1.72
CPSF1-202ENST00000527827 INSL5Q9Y5Q6 135 aa25.81■■□□□ 1.72
CPSF1-202ENST00000527827 STK24Q9Y6E0 443 aa25.81■■□□□ 1.72
CPSF1-202ENST00000527827 F5P12259 2224 aa25.81■■□□□ 1.72
CPSF1-202ENST00000527827 PP2D1A8MPX8 630 aa25.8■■□□□ 1.72
CPSF1-202ENST00000527827 H7C4K7 107 aa25.8■■□□□ 1.72
CPSF1-202ENST00000527827 RPL9P32969 192 aaKnown RBP25.8■■□□□ 1.72
CPSF1-202ENST00000527827 CCR2P41597 374 aa25.8■■□□□ 1.72
CPSF1-202ENST00000527827 RPS9P46781 194 aaKnown RBP25.8■■□□□ 1.72
CPSF1-202ENST00000527827 RINT1Q6NUQ1 792 aa25.8■■□□□ 1.72
CPSF1-202ENST00000527827 ZBTB44Q8NCP5 570 aa25.8■■□□□ 1.72
CPSF1-202ENST00000527827 NELL1Q92832 810 aa25.8■■□□□ 1.72
CPSF1-202ENST00000527827 DNASE1L2Q92874 299 aa25.8■■□□□ 1.72
CPSF1-202ENST00000527827 ZBTB45Q96K62 511 aaPredicted RBP25.8■■□□□ 1.72
CPSF1-202ENST00000527827 PCDHB6Q9Y5E3 794 aa25.8■■□□□ 1.72
CPSF1-202ENST00000527827 PCDHGA2Q9Y5H1 932 aa25.8■■□□□ 1.72
CPSF1-202ENST00000527827 MYH11P35749 1972 aa25.79■■□□□ 1.72
CPSF1-202ENST00000527827 HMGN5P82970 282 aaKnown RBP25.79■■□□□ 1.72
CPSF1-202ENST00000527827 GRM2Q14416 872 aa25.79■■□□□ 1.72
CPSF1-202ENST00000527827 PUM1Q14671 1186 aaKnown RBP eCLIP25.79■■□□□ 1.72
CPSF1-202ENST00000527827 IL17AQ16552 155 aa25.79■■□□□ 1.72
CPSF1-202ENST00000527827 FAM78AQ5JUQ0 283 aa25.79■■□□□ 1.72
CPSF1-202ENST00000527827 MPZL3Q6UWV2 235 aa25.79■■□□□ 1.72
CPSF1-202ENST00000527827 ZNF852Q6ZMS4 543 aa25.79■■□□□ 1.72
CPSF1-202ENST00000527827 C1orf186Q6ZWK4 172 aa25.79■■□□□ 1.72
CPSF1-202ENST00000527827 KCNK18Q7Z418 384 aa25.79■■□□□ 1.72
CPSF1-202ENST00000527827 SUSD3Q96L08 255 aa25.79■■□□□ 1.72
CPSF1-202ENST00000527827 DRC1Q96MC2 740 aa25.79■■□□□ 1.72
CPSF1-202ENST00000527827 TCHPQ9BT92 498 aa25.79■■□□□ 1.72
CPSF1-202ENST00000527827 ZSCAN32Q9NX65 697 aa25.79■■□□□ 1.72
CPSF1-202ENST00000527827 DLL3Q9NYJ7 618 aa25.79■■□□□ 1.72
CPSF1-202ENST00000527827 RBM19Q9Y4C8 960 aaKnown RBP25.79■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms