RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-216	ENST00000525293	FOXI1	Q12951	378 aa		3.17	□□□□□ -1.9
CD44-216	ENST00000525293	MTM1	Q13496	603 aa		3.17	□□□□□ -1.9
CD44-216	ENST00000525293	INAVA	Q3KP66	663 aa		3.17	□□□□□ -1.9
CD44-216	ENST00000525293	RNF187	Q5TA31	235 aa	Predicted RBP	3.17	□□□□□ -1.9
CD44-216	ENST00000525293	ARMC6	Q6NXE6	501 aa		3.17	□□□□□ -1.9
CD44-216	ENST00000525293	FOXR2	Q6PJQ5	311 aa		3.17	□□□□□ -1.9
CD44-216	ENST00000525293	NECAB2	Q7Z6G3	386 aa		3.17	□□□□□ -1.9
CD44-216	ENST00000525293	GPR149	Q86SP6	731 aa		3.17	□□□□□ -1.9
CD44-216	ENST00000525293	CBARP	Q8N350	705 aa	Predicted RBP	3.17	□□□□□ -1.9
CD44-216	ENST00000525293	C1orf162	Q8NEQ5	155 aa	Predicted RBP	3.17	□□□□□ -1.9
CD44-216	ENST00000525293	JADE3	Q92613	823 aa		3.17	□□□□□ -1.9
CD44-216	ENST00000525293	RAB24	Q969Q5	203 aa		3.17	□□□□□ -1.9
CD44-216	ENST00000525293	MARS2	Q96GW9	593 aa	Known RBP	3.17	□□□□□ -1.9
CD44-216	ENST00000525293	FAXDC2	Q96IV6	333 aa		3.17	□□□□□ -1.9
CD44-216	ENST00000525293	COQ10A	Q96MF6	247 aa		3.17	□□□□□ -1.9
CD44-216	ENST00000525293	RNPEP	Q9H4A4	650 aa		3.17	□□□□□ -1.9
CD44-216	ENST00000525293	RIOX1	Q9H6W3	641 aa		3.17	□□□□□ -1.9
CD44-216	ENST00000525293	SYNPO2L	Q9H987	977 aa		3.17	□□□□□ -1.9
CD44-216	ENST00000525293	MKS1	Q9NXB0	559 aa		3.17	□□□□□ -1.9
CD44-216	ENST00000525293	TES	Q9UGI8	421 aa	Known RBP	3.17	□□□□□ -1.9
CD44-216	ENST00000525293	USP25	Q9UHP3	1055 aa		3.17	□□□□□ -1.9
CD44-216	ENST00000525293	TUBD1	Q9UJT1	453 aa		3.17	□□□□□ -1.9
CD44-216	ENST00000525293	PCDHA13	Q9Y5I0	950 aa		3.17	□□□□□ -1.9
CD44-216	ENST00000525293	CDHR4	A6H8M9	788 aa		3.16	□□□□□ -1.9
CD44-216	ENST00000525293	KLHL33	A6NCF5	533 aa		3.16	□□□□□ -1.9
CD44-216	ENST00000525293	KIAA0355	O15063	1070 aa		3.16	□□□□□ -1.9
CD44-216	ENST00000525293	XPOT	O43592	962 aa	Known RBP	3.16	□□□□□ -1.9
CD44-216	ENST00000525293	NDUFS2	O75306	463 aa		3.16	□□□□□ -1.9
CD44-216	ENST00000525293	MYBL2	P10244	700 aa		3.16	□□□□□ -1.9
CD44-216	ENST00000525293	ALAS1	P13196	640 aa		3.16	□□□□□ -1.9
CD44-216	ENST00000525293	C5AR1	P21730	350 aa		3.16	□□□□□ -1.9
CD44-216	ENST00000525293	TGM1	P22735	817 aa		3.16	□□□□□ -1.9
CD44-216	ENST00000525293	SEC24C	P53992	1094 aa		3.16	□□□□□ -1.9
CD44-216	ENST00000525293	NOMO3	P69849	1222 aa		3.16	□□□□□ -1.9
CD44-216	ENST00000525293	CXADR	P78310	365 aa		3.16	□□□□□ -1.9
CD44-216	ENST00000525293	SCAP	Q12770	1279 aa		3.16	□□□□□ -1.9
CD44-216	ENST00000525293	FAM50A	Q14320	339 aa	Known RBP	3.16	□□□□□ -1.9
CD44-216	ENST00000525293	NOMO2	Q5JPE7	1267 aa		3.16	□□□□□ -1.9
CD44-216	ENST00000525293	RSPH3	Q86UC2	560 aa		3.16	□□□□□ -1.9
CD44-216	ENST00000525293	ZNF575	Q86XF7	245 aa		3.16	□□□□□ -1.9
CD44-216	ENST00000525293	CERS3	Q8IU89	383 aa		3.16	□□□□□ -1.9
CD44-216	ENST00000525293	FAM177A1	Q8N128	213 aa	Predicted RBP	3.16	□□□□□ -1.9
CD44-216	ENST00000525293	SLC44A3	Q8N4M1	653 aa		3.16	□□□□□ -1.9
CD44-216	ENST00000525293	FITM2	Q8N6M3	262 aa		3.16	□□□□□ -1.9
CD44-216	ENST00000525293	TBC1D15	Q8TC07	691 aa		3.16	□□□□□ -1.9
CD44-216	ENST00000525293	SSH1	Q8WYL5	1049 aa		3.16	□□□□□ -1.9
CD44-216	ENST00000525293	LINC00476	Q8WZB0	136 aa		3.16	□□□□□ -1.9
CD44-216	ENST00000525293	NACC2	Q96BF6	587 aa		3.16	□□□□□ -1.9
CD44-216	ENST00000525293	BOD1	Q96IK1	185 aa		3.16	□□□□□ -1.9
CD44-216	ENST00000525293		Q96MF0	132 aa		3.16	□□□□□ -1.9
CD44-216	ENST00000525293	CCDC8	Q9H0W5	538 aa	Predicted RBP	3.16	□□□□□ -1.9
CD44-216	ENST00000525293	C11orf54	Q9H0W9	315 aa	Predicted RBP	3.16	□□□□□ -1.9
CD44-216	ENST00000525293	GALNT9	Q9HCQ5	603 aa		3.16	□□□□□ -1.9
CD44-216	ENST00000525293	SAP30BP	Q9UHR5	308 aa	Known RBP	3.16	□□□□□ -1.9
CD44-216	ENST00000525293	MTO1	Q9Y2Z2	717 aa	Known RBP	3.16	□□□□□ -1.9
CD44-216	ENST00000525293	CADPS	Q9ULU8	1353 aa		3.15	□□□□□ -1.9
CD44-216	ENST00000525293	ZAR1L	A6NP61	321 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	PCDHGA12	O60330	932 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	KATNA1	O75449	491 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	ERN1	O75460	977 aa	Known RBP	3.15	□□□□□ -1.91
CD44-216	ENST00000525293	ESRRB	O95718	433 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	CENPB	P07199	599 aa	Predicted RBP	3.15	□□□□□ -1.91
CD44-216	ENST00000525293	MPL	P40238	635 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	WAS	P42768	502 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	SLC16A1	P53985	500 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	EVA1C	P58658	441 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	CTXN1	P60606	82 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	BLOC1S1	P78537	153 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	AMPD3	Q01432	767 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	TARDBP	Q13148	414 aa	Known RBP eCLIP	3.15	□□□□□ -1.91
CD44-216	ENST00000525293	MPP3	Q13368	585 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	MTMR1	Q13613	665 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	PCBP2	Q15366	365 aa	Known RBP eCLIP	3.15	□□□□□ -1.91
CD44-216	ENST00000525293	ABCB5	Q2M3G0	1257 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	STRIP1	Q5VSL9	837 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	SYDE2	Q5VT97	1194 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	DPY19L2P1	Q6NXN4	242 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	3.15	□□□□□ -1.91
CD44-216	ENST00000525293	MIGA2	Q7L4E1	593 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	FAM43A	Q8N2R8	423 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	DCBLD1	Q8N8Z6	715 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	NUP133	Q8WUM0	1156 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	TMX3	Q96JJ7	454 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	PNKP	Q96T60	521 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	CASS4	Q9NQ75	786 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	TMEM74B	Q9NUR3	256 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	TDP1	Q9NUW8	608 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	TBCCD1	Q9NVR7	557 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	HSFX1	Q9UBD0	423 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	KCNE5	Q9UJ90	142 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	TRHDE	Q9UKU6	1024 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	LIMCH1	Q9UPQ0	1083 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	PCDHGA9	Q9Y5G4	932 aa	Known RBP	3.15	□□□□□ -1.91
CD44-216	ENST00000525293	PCDHGA8	Q9Y5G5	932 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	PCDHGA7	Q9Y5G6	932 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	PCDHGA6	Q9Y5G7	932 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	PCDHGA3	Q9Y5H0	932 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	SALL3	Q9BXA9	1300 aa		3.15	□□□□□ -1.91
CD44-216	ENST00000525293	GRM6	O15303	877 aa		3.14	□□□□□ -1.91
CD44-216	ENST00000525293	HTRA2	O43464	458 aa	Predicted RBP	3.14	□□□□□ -1.91

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