RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 DOK1Q99704 481 aa8.91□□□□□ -0.98
CSMD1-213ENST00000523488 DDX50Q9BQ39 737 aaKnown RBP8.91□□□□□ -0.98
CSMD1-213ENST00000523488 CORO1BQ9BR76 489 aa8.91□□□□□ -0.98
CSMD1-213ENST00000523488 CDC42EP4Q9H3Q1 356 aaKnown RBP8.91□□□□□ -0.98
CSMD1-213ENST00000523488 PDZD7Q9H5P4 517 aa8.91□□□□□ -0.98
CSMD1-213ENST00000523488 SAP30BPQ9UHR5 308 aaKnown RBP8.91□□□□□ -0.98
CSMD1-213ENST00000523488 IGSF9BQ9UPX0 1349 aa8.91□□□□□ -0.98
CSMD1-213ENST00000523488 RBM47A0AV96 593 aaKnown RBP8.9□□□□□ -0.98
CSMD1-213ENST00000523488 MINDY4BA8MYZ0 360 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 ERVV-2B6SEH9 535 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 LOC285556D6RIA3 1793 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 H0YJX3 145 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 IPO5O00410 1097 aaKnown RBP8.9□□□□□ -0.98
CSMD1-213ENST00000523488 RNASEH1O60930 286 aaKnown RBP8.9□□□□□ -0.98
CSMD1-213ENST00000523488 GCP02774 474 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 ETS2P15036 469 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 EPHB2P29323 1055 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 RPS3AP61247 264 aaKnown RBP8.9□□□□□ -0.98
CSMD1-213ENST00000523488 CDK16Q00536 496 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 RCN1Q15293 331 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 MIGA2Q7L4E1 593 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 CABP7Q86V35 215 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 ST13P4Q8IZP2 240 aaPredicted RBP8.9□□□□□ -0.98
CSMD1-213ENST00000523488 CTNNBL1Q8WYA6 563 aaPredicted RBP8.9□□□□□ -0.98
CSMD1-213ENST00000523488 AMFRQ9UKV5 643 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 PPP1R9AQ9ULJ8 1098 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 WDR81Q562E7 1941 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 CCDC194A0A1B0GVG4 234 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 ANKRD63C9JTQ0 380 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 CCNT2O60583 730 aaKnown RBP8.9□□□□□ -0.98
CSMD1-213ENST00000523488 SERPINB7O75635 380 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 MBD4O95243 580 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 UCHL3P15374 230 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 SERPINB3P29508 390 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 CPOXP36551 454 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 KLF1Q13351 362 aaPredicted RBP8.9□□□□□ -0.98
CSMD1-213ENST00000523488 SNAPC2Q13487 334 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 RBM26Q5T8P6 1007 aaKnown RBP8.9□□□□□ -0.98
CSMD1-213ENST00000523488 NEPROQ6NW34 567 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 DRICH1Q6PGQ1 229 aaPredicted RBP8.9□□□□□ -0.98
CSMD1-213ENST00000523488 CROCCP3Q8IVE0 287 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 NME8Q8N427 588 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 FAM133AQ8N9E0 248 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.9□□□□□ -0.98
CSMD1-213ENST00000523488 ZNF384Q8TF68 577 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 SCFD1Q8WVM8 642 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 CEP95Q96GE4 821 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 CLMNQ96JQ2 1002 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 LRGUKQ96M69 825 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 CNOT11Q9UKZ1 510 aaKnown RBP8.9□□□□□ -0.98
CSMD1-213ENST00000523488 COG5Q9UP83 839 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 ZNF652Q9Y2D9 606 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 AXIN2Q9Y2T1 843 aa8.9□□□□□ -0.98
CSMD1-213ENST00000523488 CAPN9O14815 690 aa8.9□□□□□ -0.99
CSMD1-213ENST00000523488 CCDC22O60826 627 aa8.9□□□□□ -0.99
CSMD1-213ENST00000523488 SUPT3HO75486 399 aa8.9□□□□□ -0.99
CSMD1-213ENST00000523488 GAS8O95995 478 aa8.9□□□□□ -0.99
CSMD1-213ENST00000523488 OR52Z1P0C646 297 aa8.9□□□□□ -0.99
CSMD1-213ENST00000523488 FGFR4P22455 802 aa8.9□□□□□ -0.99
CSMD1-213ENST00000523488 COILP38432 576 aaPredicted RBP8.9□□□□□ -0.99
CSMD1-213ENST00000523488 ALDH3B2P48448 385 aa8.9□□□□□ -0.99
CSMD1-213ENST00000523488 STAT4Q14765 748 aa8.9□□□□□ -0.99
CSMD1-213ENST00000523488 NONOQ15233 471 aaKnown RBP eCLIP8.9□□□□□ -0.99
CSMD1-213ENST00000523488 HSF5Q4G112 596 aaPredicted RBP8.9□□□□□ -0.99
CSMD1-213ENST00000523488 OGFRL1Q5TC84 451 aaPredicted RBP8.9□□□□□ -0.99
CSMD1-213ENST00000523488 DSTYKQ6XUX3 929 aa8.9□□□□□ -0.99
CSMD1-213ENST00000523488 MAP7D3Q8IWC1 876 aa8.9□□□□□ -0.99
CSMD1-213ENST00000523488 CYP4X1Q8N118 509 aa8.9□□□□□ -0.99
CSMD1-213ENST00000523488 LMO3Q8TAP4 145 aa8.9□□□□□ -0.99
CSMD1-213ENST00000523488 PLEKHO2Q8TD55 490 aa8.9□□□□□ -0.99
CSMD1-213ENST00000523488 CRYGNQ8WXF5 182 aa8.9□□□□□ -0.99
CSMD1-213ENST00000523488 ZNF653Q96CK0 615 aa8.9□□□□□ -0.99
CSMD1-213ENST00000523488 ZSWIM1Q9BR11 485 aa8.9□□□□□ -0.99
CSMD1-213ENST00000523488 ZNF711Q9Y462 761 aa8.9□□□□□ -0.99
CSMD1-213ENST00000523488 COL14A1Q05707 1796 aaKnown RBP8.89□□□□□ -0.99
CSMD1-213ENST00000523488 GH1P01241 217 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 TFAP2AP05549 437 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 VIL1P09327 827 aaKnown RBP8.89□□□□□ -0.99
CSMD1-213ENST00000523488 BRAFP15056 766 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 CREB1P16220 341 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 ENPEPQ07075 957 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 PUM3Q15397 648 aaKnown RBP8.89□□□□□ -0.99
CSMD1-213ENST00000523488 CERKLQ49MI3 558 aaPredicted RBP8.89□□□□□ -0.99
CSMD1-213ENST00000523488 NCCRP1Q6ZVX7 275 aaPredicted RBP8.89□□□□□ -0.99
CSMD1-213ENST00000523488 DGKHQ86XP1 1220 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 ARL10Q8N8L6 244 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 FAM172AQ8WUF8 416 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 ZNF75CPQ92670 426 aaPredicted RBP8.89□□□□□ -0.99
CSMD1-213ENST00000523488 HPS3Q969F9 1004 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 VTI1AQ96AJ9 217 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 STRA6Q9BX79 667 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 UBE4BO95155 1302 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 MYH11P35749 1972 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 PP2D1A8MPX8 630 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 F5H6K3 240 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 LRRN2O75325 713 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 KLRC2P26717 231 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 CDC16Q13042 620 aa8.89□□□□□ -0.99
CSMD1-213ENST00000523488 SF3B3Q15393 1217 aaKnown RBP8.89□□□□□ -0.99
CSMD1-213ENST00000523488 P3H1Q32P28 736 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 131.8 ms