RNA–Protein interactions for RNA: ENST00000515753.1

HERC4-215, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 2

Gene HERC4, Length 589 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-215ENST00000515753 MYBL2P10244 700 aa4.31□□□□□ -1.72
HERC4-215ENST00000515753 ITGAMP11215 1152 aa4.31□□□□□ -1.72
HERC4-215ENST00000515753 CDK4P11802 303 aa4.31□□□□□ -1.72
HERC4-215ENST00000515753 C5AR1P21730 350 aa4.31□□□□□ -1.72
HERC4-215ENST00000515753 ADSLP30566 484 aaPredicted RBP4.31□□□□□ -1.72
HERC4-215ENST00000515753 ADKP55263 362 aaKnown RBP4.31□□□□□ -1.72
HERC4-215ENST00000515753 CLRN1P58418 232 aa4.31□□□□□ -1.72
HERC4-215ENST00000515753 ATP8B2P98198 1209 aa4.31□□□□□ -1.72
HERC4-215ENST00000515753 EXOSC10Q01780 885 aaKnown RBP4.31□□□□□ -1.72
HERC4-215ENST00000515753 MTM1Q13496 603 aa4.31□□□□□ -1.72
HERC4-215ENST00000515753 ERCC6LQ2NKX8 1250 aa4.31□□□□□ -1.72
HERC4-215ENST00000515753 RRP12Q5JTH9 1297 aaKnown RBP4.31□□□□□ -1.72
HERC4-215ENST00000515753 PGM2L1Q6PCE3 622 aa4.31□□□□□ -1.72
HERC4-215ENST00000515753 SEM1Q6ZVN7 128 aa4.31□□□□□ -1.72
HERC4-215ENST00000515753 PQLC1Q8N2U9 271 aa4.31□□□□□ -1.72
HERC4-215ENST00000515753 FAM98AQ8NCA5 519 aaKnown RBP4.31□□□□□ -1.72
HERC4-215ENST00000515753 OR2I1PQ8NGU4 316 aa4.31□□□□□ -1.72
HERC4-215ENST00000515753 PHACTR3Q96KR7 559 aa4.31□□□□□ -1.72
HERC4-215ENST00000515753 TEKT5Q96M29 485 aa4.31□□□□□ -1.72
HERC4-215ENST00000515753 NEU1Q99519 415 aa4.31□□□□□ -1.72
HERC4-215ENST00000515753 RNF181Q9P0P0 153 aa4.31□□□□□ -1.72
HERC4-215ENST00000515753 SAP30BPQ9UHR5 308 aaKnown RBP4.31□□□□□ -1.72
HERC4-215ENST00000515753 TNKSO95271 1327 aa4.3□□□□□ -1.72
HERC4-215ENST00000515753 MARCH11A6NNE9 402 aa4.3□□□□□ -1.72
HERC4-215ENST00000515753 HLA-DOAP06340 250 aa4.3□□□□□ -1.72
HERC4-215ENST00000515753 EGR2P11161 476 aaPredicted RBP4.3□□□□□ -1.72
HERC4-215ENST00000515753 GSPT1P15170 499 aaKnown RBP4.3□□□□□ -1.72
HERC4-215ENST00000515753 FAM50AQ14320 339 aaKnown RBP4.3□□□□□ -1.72
HERC4-215ENST00000515753 NOMO1Q15155 1222 aa4.3□□□□□ -1.72
HERC4-215ENST00000515753 BRDTQ58F21 947 aaPredicted RBP4.3□□□□□ -1.72
HERC4-215ENST00000515753 FAM102AQ5T9C2 384 aaPredicted RBP4.3□□□□□ -1.72
HERC4-215ENST00000515753 PAPD7Q5XG87 772 aaKnown RBP4.3□□□□□ -1.72
HERC4-215ENST00000515753 METRNLQ641Q3 311 aa4.3□□□□□ -1.72
HERC4-215ENST00000515753 MIGA2Q7L4E1 593 aa4.3□□□□□ -1.72
HERC4-215ENST00000515753 REPS2Q8NFH8 660 aa4.3□□□□□ -1.72
HERC4-215ENST00000515753 TFAP2CQ92754 450 aa4.3□□□□□ -1.72
HERC4-215ENST00000515753 UHRF1Q96T88 793 aaPredicted RBP4.3□□□□□ -1.72
HERC4-215ENST00000515753 LRFN3Q9BTN0 628 aa4.3□□□□□ -1.72
HERC4-215ENST00000515753 SPATA5L1Q9BVQ7 753 aa4.3□□□□□ -1.72
HERC4-215ENST00000515753 CCDC8Q9H0W5 538 aaPredicted RBP4.3□□□□□ -1.72
HERC4-215ENST00000515753 TCF7L1Q9HCS4 588 aa4.3□□□□□ -1.72
HERC4-215ENST00000515753 TMEM140Q9NV12 185 aa4.3□□□□□ -1.72
HERC4-215ENST00000515753 IPPQ9Y573 584 aa4.3□□□□□ -1.72
HERC4-215ENST00000515753 CCDC180Q9P1Z9 1646 aa4.3□□□□□ -1.72
HERC4-215ENST00000515753 hCG_2014768A0A024R1R8 64 aa4.29□□□□□ -1.72
HERC4-215ENST00000515753 INO80B-WBP1J3KQ70 363 aa4.29□□□□□ -1.72
HERC4-215ENST00000515753 WNT10BO00744 389 aa4.29□□□□□ -1.72
HERC4-215ENST00000515753 GPR32O75388 356 aa4.29□□□□□ -1.72
HERC4-215ENST00000515753 ESRRBO95718 433 aa4.29□□□□□ -1.72
HERC4-215ENST00000515753 ERBB2P04626 1255 aa4.29□□□□□ -1.72
HERC4-215ENST00000515753 AMY1AP04745 511 aa4.29□□□□□ -1.72
HERC4-215ENST00000515753 SPATA31D3P0C874 917 aa4.29□□□□□ -1.72
HERC4-215ENST00000515753 PTPN7P35236 360 aa4.29□□□□□ -1.72
HERC4-215ENST00000515753 MPLP40238 635 aa4.29□□□□□ -1.72
HERC4-215ENST00000515753 EVA1CP58658 441 aa4.29□□□□□ -1.72
HERC4-215ENST00000515753 CDC42EP1Q00587 391 aa4.29□□□□□ -1.72
HERC4-215ENST00000515753 PCBP2Q15366 365 aaKnown RBP eCLIP4.29□□□□□ -1.72
HERC4-215ENST00000515753 CLUL1Q15846 466 aa4.29□□□□□ -1.72
HERC4-215ENST00000515753 DACT2Q5SW24 774 aa4.29□□□□□ -1.72
HERC4-215ENST00000515753 ZNF362Q5T0B9 420 aaPredicted RBP4.29□□□□□ -1.72
HERC4-215ENST00000515753 ABHD17BQ5VST6 288 aa4.29□□□□□ -1.72
HERC4-215ENST00000515753 AFMIDQ63HM1 303 aa4.29□□□□□ -1.72
HERC4-215ENST00000515753 SPATA31D4Q6ZUB0 917 aa4.29□□□□□ -1.72
HERC4-215ENST00000515753 SLC35B2Q8TB61 432 aa4.29□□□□□ -1.72
HERC4-215ENST00000515753 NRG4Q8WWG1 115 aa4.29□□□□□ -1.72
HERC4-215ENST00000515753 HDAC10Q969S8 669 aa4.29□□□□□ -1.72
HERC4-215ENST00000515753 CHMP4CQ96CF2 233 aa4.29□□□□□ -1.72
HERC4-215ENST00000515753 C7orf25Q9BPX7 421 aa4.29□□□□□ -1.72
HERC4-215ENST00000515753 INO80BQ9C086 356 aaPredicted RBP4.29□□□□□ -1.72
HERC4-215ENST00000515753 SENP6Q9GZR1 1112 aaPredicted RBP4.29□□□□□ -1.72
HERC4-215ENST00000515753 ALG13Q9NP73 1137 aaKnown RBP4.29□□□□□ -1.72
HERC4-215ENST00000515753 AJAP1Q9UKB5 411 aaPredicted RBP4.29□□□□□ -1.72
HERC4-215ENST00000515753 TLK1Q9UKI8 766 aa4.29□□□□□ -1.72
HERC4-215ENST00000515753 FPGT-TNNI3KV9GXZ4 949 aa4.29□□□□□ -1.72
HERC4-215ENST00000515753 HTRA2O43464 458 aaPredicted RBP4.28□□□□□ -1.72
HERC4-215ENST00000515753 XPOTO43592 962 aaKnown RBP4.28□□□□□ -1.72
HERC4-215ENST00000515753 ZRANB2O95218 330 aaKnown RBP eCLIP4.28□□□□□ -1.721e-6■■■■□ 23.3
HERC4-215ENST00000515753 ATP5JP18859 108 aa4.28□□□□□ -1.72
HERC4-215ENST00000515753 PCSK1P29120 753 aa4.28□□□□□ -1.72
HERC4-215ENST00000515753 RECQLP46063 649 aaPredicted RBP4.28□□□□□ -1.72
HERC4-215ENST00000515753 ALDH1A3P47895 512 aa4.28□□□□□ -1.72
HERC4-215ENST00000515753 CHN2P52757 468 aa4.28□□□□□ -1.72
HERC4-215ENST00000515753 PER3P56645 1201 aa4.28□□□□□ -1.72
HERC4-215ENST00000515753 MPP3Q13368 585 aa4.28□□□□□ -1.72
HERC4-215ENST00000515753 PTPN21Q16825 1174 aa4.28□□□□□ -1.72
HERC4-215ENST00000515753 EPHA10Q5JZY3 1008 aa4.28□□□□□ -1.72
HERC4-215ENST00000515753 ATXN7L2Q5T6C5 722 aaPredicted RBP4.28□□□□□ -1.72
HERC4-215ENST00000515753 AGAP9Q5VTM2 703 aa4.28□□□□□ -1.72
HERC4-215ENST00000515753 RHOT2Q8IXI1 618 aa4.28□□□□□ -1.72
HERC4-215ENST00000515753 COA7Q96BR5 231 aa4.28□□□□□ -1.72
HERC4-215ENST00000515753 SLC2A13Q96QE2 648 aa4.28□□□□□ -1.72
HERC4-215ENST00000515753 MRI1Q9BV20 369 aa4.28□□□□□ -1.72
HERC4-215ENST00000515753 KIAA1586Q9HCI6 787 aa4.28□□□□□ -1.72
HERC4-215ENST00000515753 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.28□□□□□ -1.72
HERC4-215ENST00000515753 DNM3Q9UQ16 869 aa4.28□□□□□ -1.72
HERC4-215ENST00000515753 FRMD4BQ9Y2L6 1034 aa4.28□□□□□ -1.72
HERC4-215ENST00000515753 CFAP20Q9Y6A4 193 aaKnown RBP4.28□□□□□ -1.72
HERC4-215ENST00000515753 PNPLA7Q6ZV29 1317 aa4.27□□□□□ -1.73
HERC4-215ENST00000515753 DRGXA6NNA5 263 aa4.27□□□□□ -1.73
HERC4-215ENST00000515753 CDKL5O76039 1030 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms