RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 C2CD4DB7Z1M9 353 aa12.51□□□□□ -0.41
VCAN-212ENST00000515397 DCXO43602 365 aa12.51□□□□□ -0.41
VCAN-212ENST00000515397 GAP43P17677 238 aa12.51□□□□□ -0.41
VCAN-212ENST00000515397 ASIC1P78348 528 aa12.51□□□□□ -0.41
VCAN-212ENST00000515397 ITIH3Q06033 890 aa12.51□□□□□ -0.41
VCAN-212ENST00000515397 RESP18Q5W5W9 173 aa12.51□□□□□ -0.41
VCAN-212ENST00000515397 JADE1Q6IE81 842 aa12.51□□□□□ -0.41
VCAN-212ENST00000515397 CRELD2Q6UXH1 353 aaPredicted RBP12.51□□□□□ -0.41
VCAN-212ENST00000515397 GPR149Q86SP6 731 aa12.51□□□□□ -0.41
VCAN-212ENST00000515397 SYCP3Q8IZU3 236 aa12.51□□□□□ -0.41
VCAN-212ENST00000515397 IQUBQ8NA54 791 aa12.51□□□□□ -0.41
VCAN-212ENST00000515397 KREMEN2Q8NCW0 462 aa12.51□□□□□ -0.41
VCAN-212ENST00000515397 LEO1Q8WVC0 666 aaPredicted RBP12.51□□□□□ -0.41
VCAN-212ENST00000515397 PIK3R5Q8WYR1 880 aa12.51□□□□□ -0.41
VCAN-212ENST00000515397 POMGNT1Q8WZA1 660 aa12.51□□□□□ -0.41
VCAN-212ENST00000515397 DDX27Q96GQ7 796 aaKnown RBP12.51□□□□□ -0.41
VCAN-212ENST00000515397 RIPOR3Q96MK2 946 aa12.51□□□□□ -0.41
VCAN-212ENST00000515397 UROC1Q96N76 676 aa12.51□□□□□ -0.41
VCAN-212ENST00000515397 ACCSQ96QU6 501 aa12.51□□□□□ -0.41
VCAN-212ENST00000515397 TRIM9Q9C026 710 aa12.51□□□□□ -0.41
VCAN-212ENST00000515397 ST6GALNAC4Q9H4F1 302 aa12.51□□□□□ -0.41
VCAN-212ENST00000515397 GDPD2Q9HCC8 539 aa12.51□□□□□ -0.41
VCAN-212ENST00000515397 SLC38A7Q9NVC3 462 aa12.51□□□□□ -0.41
VCAN-212ENST00000515397 KBTBD4Q9NVX7 518 aa12.51□□□□□ -0.41
VCAN-212ENST00000515397 FNIP2Q9P278 1114 aa12.51□□□□□ -0.41
VCAN-212ENST00000515397 SERTAD1Q9UHV2 236 aa12.51□□□□□ -0.41
VCAN-212ENST00000515397 CPSF3Q9UKF6 684 aaKnown RBP12.51□□□□□ -0.41
VCAN-212ENST00000515397 AGO2Q9UKV8 859 aaKnown RBP12.51□□□□□ -0.41
VCAN-212ENST00000515397 NUB1Q9Y5A7 615 aa12.51□□□□□ -0.41
VCAN-212ENST00000515397 FRMD3A2A2Y4 597 aa12.5□□□□□ -0.41
VCAN-212ENST00000515397 TMEM189-UBE2V1I3L0A0 370 aa12.5□□□□□ -0.41
VCAN-212ENST00000515397 PPP1R37O75864 691 aa12.5□□□□□ -0.41
VCAN-212ENST00000515397 ASGR2P07307 311 aa12.5□□□□□ -0.41
VCAN-212ENST00000515397 NFICP08651 508 aa12.5□□□□□ -0.41
VCAN-212ENST00000515397 PDIA4P13667 645 aaKnown RBP12.5□□□□□ -0.41
VCAN-212ENST00000515397 COL9A1P20849 921 aa12.5□□□□□ -0.41
VCAN-212ENST00000515397 MCM4P33991 863 aa12.5□□□□□ -0.41
VCAN-212ENST00000515397 MTHFRP42898 656 aa12.5□□□□□ -0.41
VCAN-212ENST00000515397 WNT7BP56706 349 aa12.5□□□□□ -0.41
VCAN-212ENST00000515397 PPP2R3AQ06190 1150 aa12.5□□□□□ -0.41
VCAN-212ENST00000515397 ZBTB6Q15916 424 aa12.5□□□□□ -0.41
VCAN-212ENST00000515397 VARS2Q5ST30 1063 aaKnown RBP12.5□□□□□ -0.41
VCAN-212ENST00000515397 L1TD1Q5T7N2 865 aaKnown RBP12.5□□□□□ -0.41
VCAN-212ENST00000515397 SCARA3Q6AZY7 606 aa12.5□□□□□ -0.41
VCAN-212ENST00000515397 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.5□□□□□ -0.41
VCAN-212ENST00000515397 CCDC65Q8IXS2 484 aa12.5□□□□□ -0.41
VCAN-212ENST00000515397 KCNN1Q92952 543 aa12.5□□□□□ -0.41
VCAN-212ENST00000515397 SPATA32Q96LK8 384 aa12.5□□□□□ -0.41
VCAN-212ENST00000515397 CBWD1Q9BRT8 395 aa12.5□□□□□ -0.41
VCAN-212ENST00000515397 FAM213AQ9BRX8 229 aa12.5□□□□□ -0.41
VCAN-212ENST00000515397 LRFN3Q9BTN0 628 aa12.5□□□□□ -0.41
VCAN-212ENST00000515397 TNMDQ9H2S6 317 aa12.5□□□□□ -0.41
VCAN-212ENST00000515397 SMOC2Q9H3U7 446 aa12.5□□□□□ -0.41
VCAN-212ENST00000515397 SFXN1Q9H9B4 322 aa12.5□□□□□ -0.41
VCAN-212ENST00000515397 PLEKHA5Q9HAU0 1116 aa12.5□□□□□ -0.41
VCAN-212ENST00000515397 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.5□□□□□ -0.41
VCAN-212ENST00000515397 FAM13BQ9NYF5 915 aa12.5□□□□□ -0.41
VCAN-212ENST00000515397 SEL1LQ9UBV2 794 aa12.5□□□□□ -0.41
VCAN-212ENST00000515397 LIMD1Q9UGP4 676 aa12.5□□□□□ -0.41
VCAN-212ENST00000515397 KCNH3Q9ULD8 1083 aa12.5□□□□□ -0.41
VCAN-212ENST00000515397 PCDHB13Q9Y5F0 798 aa12.5□□□□□ -0.41
VCAN-212ENST00000515397 CDY1Q9Y6F8 540 aa12.5□□□□□ -0.41
VCAN-212ENST00000515397 TRIOO75962 3097 aa12.5□□□□□ -0.41
VCAN-212ENST00000515397 TRAPPC3O43617 180 aa12.49□□□□□ -0.41
VCAN-212ENST00000515397 RPL9P32969 192 aaKnown RBP12.49□□□□□ -0.41
VCAN-212ENST00000515397 HOXD13P35453 343 aa12.49□□□□□ -0.41
VCAN-212ENST00000515397 NTHL1P78549 312 aa12.49□□□□□ -0.41
VCAN-212ENST00000515397 ELAVL2Q12926 359 aaKnown RBP12.49□□□□□ -0.41
VCAN-212ENST00000515397 CUL4BQ13620 913 aa12.49□□□□□ -0.41
VCAN-212ENST00000515397 TMEM31Q5JXX7 168 aa12.49□□□□□ -0.41
VCAN-212ENST00000515397 ATL3Q6DD88 541 aa12.49□□□□□ -0.41
VCAN-212ENST00000515397 NELFCDQ8IXH7 590 aa12.49□□□□□ -0.41
VCAN-212ENST00000515397 SMG7Q92540 1137 aaKnown RBP12.49□□□□□ -0.41
VCAN-212ENST00000515397 ZNF707Q96C28 371 aaPredicted RBP12.49□□□□□ -0.41
VCAN-212ENST00000515397 C7orf25Q9BPX7 421 aa12.49□□□□□ -0.41
VCAN-212ENST00000515397 C1QTNF1Q9BXJ1 281 aa12.49□□□□□ -0.41
VCAN-212ENST00000515397 PIDD1Q9HB75 910 aa12.49□□□□□ -0.41
VCAN-212ENST00000515397 MTRRQ9UBK8 725 aa12.49□□□□□ -0.41
VCAN-212ENST00000515397 POLIQ9UNA4 740 aa12.49□□□□□ -0.41
VCAN-212ENST00000515397 STYXL1Q9Y6J8 313 aa12.49□□□□□ -0.41
VCAN-212ENST00000515397 MYO10Q9HD67 2058 aa12.49□□□□□ -0.41
VCAN-212ENST00000515397 SPTLC1O15269 473 aa12.48□□□□□ -0.41
VCAN-212ENST00000515397 CCL16O15467 120 aa12.48□□□□□ -0.41
VCAN-212ENST00000515397 N4BP1O75113 896 aaKnown RBP12.48□□□□□ -0.41
VCAN-212ENST00000515397 ADRB2P07550 413 aa12.48□□□□□ -0.41
VCAN-212ENST00000515397 ALADP13716 330 aa12.48□□□□□ -0.41
VCAN-212ENST00000515397 KRT85P78386 507 aa12.48□□□□□ -0.41
VCAN-212ENST00000515397 SLFN12LQ6IEE8 588 aa12.48□□□□□ -0.41
VCAN-212ENST00000515397 SUSD3Q96L08 255 aa12.48□□□□□ -0.41
VCAN-212ENST00000515397 NECTIN4Q96NY8 510 aa12.48□□□□□ -0.41
VCAN-212ENST00000515397 PLEKHA4Q9H4M7 779 aa12.48□□□□□ -0.41
VCAN-212ENST00000515397 SLC39A2Q9NP94 309 aa12.48□□□□□ -0.41
VCAN-212ENST00000515397 OLFML3Q9NRN5 406 aa12.48□□□□□ -0.41
VCAN-212ENST00000515397 UBQLN1Q9UMX0 589 aaKnown RBP12.48□□□□□ -0.41
VCAN-212ENST00000515397 EXOC7Q9UPT5 735 aa12.48□□□□□ -0.41
VCAN-212ENST00000515397 CITO14578 2027 aa12.48□□□□□ -0.41
VCAN-212ENST00000515397 VWA8A3KMH1 1905 aa12.48□□□□□ -0.41
VCAN-212ENST00000515397 PLXNA3P51805 1871 aa12.48□□□□□ -0.41
VCAN-212ENST00000515397 DOCK6Q96HP0 2047 aa12.47□□□□□ -0.41
VCAN-212ENST00000515397 CLIC2O15247 247 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms