RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 TARSP26639 723 aaKnown RBP13.98□□□□□ -0.17
TCOF1-214ENST00000515035 ANXA13P27216 316 aa13.98□□□□□ -0.17
TCOF1-214ENST00000515035 DSG1Q02413 1049 aa13.98□□□□□ -0.17
TCOF1-214ENST00000515035 LVRNQ6Q4G3 990 aa13.98□□□□□ -0.17
TCOF1-214ENST00000515035 BARGINQ6ZT62 677 aa13.98□□□□□ -0.17
TCOF1-214ENST00000515035 SPON1Q9HCB6 807 aa13.98□□□□□ -0.17
TCOF1-214ENST00000515035 JAK3P52333 1124 aa13.98□□□□□ -0.17
TCOF1-214ENST00000515035 ARPP19P56211 112 aa13.98□□□□□ -0.17
TCOF1-214ENST00000515035 RPS6P62753 249 aaKnown RBP13.98□□□□□ -0.17
TCOF1-214ENST00000515035 FAM102AQ5T9C2 384 aaPredicted RBP13.98□□□□□ -0.17
TCOF1-214ENST00000515035 RC3H1Q5TC82 1133 aaKnown RBP13.98□□□□□ -0.17
TCOF1-214ENST00000515035 USP38Q8NB14 1042 aa13.98□□□□□ -0.17
TCOF1-214ENST00000515035 C3orf20Q8ND61 904 aa13.98□□□□□ -0.17
TCOF1-214ENST00000515035 KLF6Q99612 283 aaPredicted RBP13.98□□□□□ -0.17
TCOF1-214ENST00000515035 ERP44Q9BS26 406 aa13.98□□□□□ -0.17
TCOF1-214ENST00000515035 ZNF341Q9BYN7 854 aa13.98□□□□□ -0.17
TCOF1-214ENST00000515035 CASS4Q9NQ75 786 aa13.98□□□□□ -0.17
TCOF1-214ENST00000515035 TUBE1Q9UJT0 475 aa13.98□□□□□ -0.17
TCOF1-214ENST00000515035 USP17L5A8MUK1 530 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 E5RI56 91 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 SCTRP47872 440 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 DNAJC3Q13217 504 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 SLC29A2Q14542 456 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 EEPD1Q7L9B9 569 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 PRPF39Q86UA1 669 aaKnown RBP13.97□□□□□ -0.17
TCOF1-214ENST00000515035 APOBEC3FQ8IUX4 373 aaKnown RBP13.97□□□□□ -0.17
TCOF1-214ENST00000515035 KIRREL3Q8IZU9 778 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 STX19Q8N4C7 294 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 TRIM9Q9C026 710 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 VCPKMTQ9H867 229 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 ATP6V0A4Q9HBG4 840 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 ZC3H7BQ9UGR2 993 aaKnown RBP13.97□□□□□ -0.17
TCOF1-214ENST00000515035 STAP1Q9ULZ2 295 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 MED14O60244 1454 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 ATP9BO43861 1147 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 GYPCP04921 128 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 ZCCHC18P0CG32 403 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 C6orf10Q5SRN2 563 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 DSTYKQ6XUX3 929 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 SP8Q8IXZ3 490 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 CELF4Q9BZC1 486 aaKnown RBP13.97□□□□□ -0.17
TCOF1-214ENST00000515035 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.97□□□□□ -0.17
TCOF1-214ENST00000515035 PCMTD2Q9NV79 361 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 TMEM260Q9NX78 707 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 AIPL1Q9NZN9 384 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 A0A1B0GW55 424 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 CYP26A1O43174 497 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 DUX4L2P0CJ85 424 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 DUX4L3P0CJ86 424 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 DUX4L4P0CJ87 422 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 DUX4L5P0CJ88 424 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 DUX4L6P0CJ89 424 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 DUX4L7P0CJ90 424 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 CYP2D6P10635 497 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 HSD17B3P37058 310 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 ZNF200P98182 395 aaPredicted RBP13.97□□□□□ -0.17
TCOF1-214ENST00000515035 TRADDQ15628 312 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 PID1Q7Z2X4 250 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 CELF1Q92879 486 aaKnown RBP13.97□□□□□ -0.17
TCOF1-214ENST00000515035 RNF181Q9P0P0 153 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 UVRAGQ9P2Y5 699 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 DUX4Q9UBX2 424 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 ZNF212Q9UDV6 495 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 PRR23D1E9PI22 279 aaPredicted RBP13.97□□□□□ -0.17
TCOF1-214ENST00000515035 PRR23D2P0DMB1 279 aaPredicted RBP13.97□□□□□ -0.17
TCOF1-214ENST00000515035 HSPA1AP0DMV8 641 aaKnown RBP13.97□□□□□ -0.17
TCOF1-214ENST00000515035 HSPA1BP0DMV9 641 aaKnown RBP13.97□□□□□ -0.17
TCOF1-214ENST00000515035 TRIM28Q13263 835 aaKnown RBP13.97□□□□□ -0.17
TCOF1-214ENST00000515035 NFIXQ14938 502 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 RRM2BQ7LG56 351 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 FOXP3Q9BZS1 431 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 EXOSC4Q9NPD3 245 aaKnown RBP13.97□□□□□ -0.17
TCOF1-214ENST00000515035 KLHL11Q9NVR0 708 aa13.97□□□□□ -0.17
TCOF1-214ENST00000515035 PTK7Q13308 1070 aa13.96□□□□□ -0.17
TCOF1-214ENST00000515035 MXD4Q14582 209 aaPredicted RBP13.96□□□□□ -0.17
TCOF1-214ENST00000515035 PCYOX1LQ8NBM8 494 aa13.96□□□□□ -0.17
TCOF1-214ENST00000515035 PDCD6IPQ8WUM4 868 aaKnown RBP13.96□□□□□ -0.17
TCOF1-214ENST00000515035 OSBPL8Q9BZF1 889 aa13.96□□□□□ -0.17
TCOF1-214ENST00000515035 CARD9Q9H257 536 aa13.96□□□□□ -0.17
TCOF1-214ENST00000515035 PAPOLBQ9NRJ5 636 aaKnown RBP13.96□□□□□ -0.17
TCOF1-214ENST00000515035 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.96□□□□□ -0.17
TCOF1-214ENST00000515035 DTNAQ9Y4J8 743 aa13.96□□□□□ -0.17
TCOF1-214ENST00000515035 CAND2O75155 1236 aa13.96□□□□□ -0.17
TCOF1-214ENST00000515035 APRTP07741 180 aa13.96□□□□□ -0.17
TCOF1-214ENST00000515035 MAPK6Q16659 721 aa13.96□□□□□ -0.17
TCOF1-214ENST00000515035 SYCP2LQ5T4T6 812 aa13.96□□□□□ -0.17
TCOF1-214ENST00000515035 ZNF507Q8TCN5 953 aa13.96□□□□□ -0.17
TCOF1-214ENST00000515035 STMN3Q9NZ72 180 aa13.96□□□□□ -0.17
TCOF1-214ENST00000515035 UBA6A0AVT1 1052 aaPredicted RBP13.96□□□□□ -0.18
TCOF1-214ENST00000515035 SRP72O76094 671 aaKnown RBP13.96□□□□□ -0.18
TCOF1-214ENST00000515035 MAGEA4P43358 317 aa13.96□□□□□ -0.18
TCOF1-214ENST00000515035 TAP1Q03518 808 aa13.96□□□□□ -0.18
TCOF1-214ENST00000515035 WLSQ5T9L3 541 aa13.96□□□□□ -0.18
TCOF1-214ENST00000515035 TTC33Q6PID6 262 aaPredicted RBP13.96□□□□□ -0.18
TCOF1-214ENST00000515035 HPS3Q969F9 1004 aa13.96□□□□□ -0.18
TCOF1-214ENST00000515035 CROCC2H7BZ55 1655 aa13.96□□□□□ -0.18
TCOF1-214ENST00000515035 SNUPNO95149 360 aaKnown RBP13.96□□□□□ -0.18
TCOF1-214ENST00000515035 PLOD1Q02809 727 aaPredicted RBP13.96□□□□□ -0.18
TCOF1-214ENST00000515035 SGMS1Q86VZ5 419 aa13.96□□□□□ -0.18
TCOF1-214ENST00000515035 DCAF4Q8WV16 495 aa13.96□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms