RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 CHURC1-FNTBB4DL54 471 aa22.39■■□□□ 1.17
SQSTM1-215ENST00000514093 HRO43593 1189 aa22.39■■□□□ 1.17
SQSTM1-215ENST00000514093 XBP1P17861 261 aa22.39■■□□□ 1.17
SQSTM1-215ENST00000514093 VIPR2P41587 438 aa22.39■■□□□ 1.17
SQSTM1-215ENST00000514093 FNTBP49356 437 aa22.39■■□□□ 1.17
SQSTM1-215ENST00000514093 GAS6Q14393 721 aa22.39■■□□□ 1.17
SQSTM1-215ENST00000514093 UPP1Q16831 310 aa22.39■■□□□ 1.17
SQSTM1-215ENST00000514093 VITQ6UXI7 678 aa22.39■■□□□ 1.17
SQSTM1-215ENST00000514093 MAMSTRQ6ZN01 415 aa22.39■■□□□ 1.17
SQSTM1-215ENST00000514093 PRR23CQ6ZRP0 262 aa22.39■■□□□ 1.17
SQSTM1-215ENST00000514093 MAP4K3Q8IVH8 894 aa22.39■■□□□ 1.17
SQSTM1-215ENST00000514093 IRF7Q92985 503 aa22.39■■□□□ 1.17
SQSTM1-215ENST00000514093 ASB16Q96NS5 453 aa22.39■■□□□ 1.17
SQSTM1-215ENST00000514093 PPP1R10Q96QC0 940 aaKnown RBP22.39■■□□□ 1.17
SQSTM1-215ENST00000514093 ADPGKQ9BRR6 497 aa22.39■■□□□ 1.17
SQSTM1-215ENST00000514093 CYP4F11Q9HBI6 524 aa22.39■■□□□ 1.17
SQSTM1-215ENST00000514093 F5P12259 2224 aa22.39■■□□□ 1.17
SQSTM1-215ENST00000514093 ACKR2O00590 384 aa22.38■■□□□ 1.17
SQSTM1-215ENST00000514093 WNT7AO00755 349 aa22.38■■□□□ 1.17
SQSTM1-215ENST00000514093 SEC24AO95486 1093 aa22.38■■□□□ 1.17
SQSTM1-215ENST00000514093 CXCL12P48061 93 aa22.38■■□□□ 1.17
SQSTM1-215ENST00000514093 RBM25P49756 843 aaKnown RBP22.38■■□□□ 1.17
SQSTM1-215ENST00000514093 MAPK6Q16659 721 aa22.38■■□□□ 1.17
SQSTM1-215ENST00000514093 PDZD4Q76G19 769 aaPredicted RBP22.38■■□□□ 1.17
SQSTM1-215ENST00000514093 HS6ST3Q8IZP7 471 aa22.38■■□□□ 1.17
SQSTM1-215ENST00000514093 POLD4Q9HCU8 107 aa22.38■■□□□ 1.17
SQSTM1-215ENST00000514093 RALYQ9UKM9 306 aaKnown RBP22.38■■□□□ 1.17
SQSTM1-215ENST00000514093 TRAPPC3O43617 180 aa22.37■■□□□ 1.17
SQSTM1-215ENST00000514093 ABLIM3O94929 683 aa22.37■■□□□ 1.17
SQSTM1-215ENST00000514093 CHRNB1P11230 501 aa22.37■■□□□ 1.17
SQSTM1-215ENST00000514093 XRCC6P12956 609 aaKnown RBP eCLIP22.37■■□□□ 1.171e-5■■■□□ 14.9
SQSTM1-215ENST00000514093 GJA1P17302 382 aa22.37■■□□□ 1.17
SQSTM1-215ENST00000514093 PSMC3P17980 439 aa22.37■■□□□ 1.17
SQSTM1-215ENST00000514093 CCNE1P24864 410 aa22.37■■□□□ 1.17
SQSTM1-215ENST00000514093 HEATR6Q6AI08 1181 aaKnown RBP22.37■■□□□ 1.17
SQSTM1-215ENST00000514093 SLC8B1Q6J4K2 584 aa22.37■■□□□ 1.17
SQSTM1-215ENST00000514093 MCPH1Q8NEM0 835 aa22.37■■□□□ 1.17
SQSTM1-215ENST00000514093 KIFC3Q9BVG8 833 aa22.37■■□□□ 1.17
SQSTM1-215ENST00000514093 CCDC113Q9H0I3 377 aa22.37■■□□□ 1.17
SQSTM1-215ENST00000514093 C2orf40Q9H1Z8 148 aa22.37■■□□□ 1.17
SQSTM1-215ENST00000514093 USP24Q9UPU5 2620 aa22.37■■□□□ 1.17
SQSTM1-215ENST00000514093 TICRRQ7Z2Z1 1910 aa22.36■■□□□ 1.17
SQSTM1-215ENST00000514093 ZNF197O14709 1029 aa22.36■■□□□ 1.17
SQSTM1-215ENST00000514093 LRP3O75074 770 aa22.36■■□□□ 1.17
SQSTM1-215ENST00000514093 CDKL5O76039 1030 aa22.36■■□□□ 1.17
SQSTM1-215ENST00000514093 SPATA31C1P0DKV0 1188 aa22.36■■□□□ 1.17
SQSTM1-215ENST00000514093 ATF2P15336 505 aa22.36■■□□□ 1.17
SQSTM1-215ENST00000514093 HOXC13P31276 330 aa22.36■■□□□ 1.17
SQSTM1-215ENST00000514093 SOX4Q06945 474 aaPredicted RBP22.36■■□□□ 1.17
SQSTM1-215ENST00000514093 CSRP2Q16527 193 aa22.36■■□□□ 1.17
SQSTM1-215ENST00000514093 ARHGAP30Q7Z6I6 1101 aaPredicted RBP22.36■■□□□ 1.17
SQSTM1-215ENST00000514093 DEPTORQ8TB45 409 aa22.36■■□□□ 1.17
SQSTM1-215ENST00000514093 IER2Q9BTL4 223 aa22.36■■□□□ 1.17
SQSTM1-215ENST00000514093 RBM12Q9NTZ6 932 aaKnown RBP22.36■■□□□ 1.17
SQSTM1-215ENST00000514093 INSL5Q9Y5Q6 135 aa22.36■■□□□ 1.17
SQSTM1-215ENST00000514093 NCANO14594 1321 aa22.35■■□□□ 1.17
SQSTM1-215ENST00000514093 COL4A2P08572 1712 aa22.35■■□□□ 1.17
SQSTM1-215ENST00000514093 KRT2P35908 639 aa22.35■■□□□ 1.17
SQSTM1-215ENST00000514093 CYP4A22Q5TCH4 519 aa22.35■■□□□ 1.17
SQSTM1-215ENST00000514093 NT5DC1Q5TFE4 455 aa22.35■■□□□ 1.17
SQSTM1-215ENST00000514093 CENPQQ7L2Z9 268 aaPredicted RBP22.35■■□□□ 1.17
SQSTM1-215ENST00000514093 CATSPER3Q86XQ3 398 aa22.35■■□□□ 1.17
SQSTM1-215ENST00000514093 SMARCD2Q92925 531 aa22.35■■□□□ 1.17
SQSTM1-215ENST00000514093 TNFRSF25Q93038 417 aa22.35■■□□□ 1.17
SQSTM1-215ENST00000514093 UROC1Q96N76 676 aa22.35■■□□□ 1.17
SQSTM1-215ENST00000514093 PDRG1Q9NUG6 133 aa22.35■■□□□ 1.17
SQSTM1-215ENST00000514093 STK36Q9NRP7 1315 aa22.34■■□□□ 1.17
SQSTM1-215ENST00000514093 SMIM28A0A1B0GU29 152 aa22.34■■□□□ 1.17
SQSTM1-215ENST00000514093 ZNF263O14978 683 aa22.34■■□□□ 1.17
SQSTM1-215ENST00000514093 MOSPD3O75425 235 aa22.34■■□□□ 1.17
SQSTM1-215ENST00000514093 MED24O75448 989 aa22.34■■□□□ 1.17
SQSTM1-215ENST00000514093 REC8O95072 547 aa22.34■■□□□ 1.17
SQSTM1-215ENST00000514093 MYL4P12829 197 aa22.34■■□□□ 1.17
SQSTM1-215ENST00000514093 DCAF4L1Q3SXM0 396 aa22.34■■□□□ 1.17
SQSTM1-215ENST00000514093 GPIHBP1Q8IV16 184 aa22.34■■□□□ 1.17
SQSTM1-215ENST00000514093 TCEAL8Q8IYN2 117 aa22.34■■□□□ 1.17
SQSTM1-215ENST00000514093 ZSCAN18Q8TBC5 510 aaPredicted RBP22.34■■□□□ 1.17
SQSTM1-215ENST00000514093 TRPV5Q9NQA5 729 aa22.34■■□□□ 1.17
SQSTM1-215ENST00000514093 CACNA1GO43497 2377 aa22.34■■□□□ 1.17
SQSTM1-215ENST00000514093 TRIP11Q15643 1979 aa22.33■■□□□ 1.17
SQSTM1-215ENST00000514093 MICAL2O94851 1124 aa22.33■■□□□ 1.17
SQSTM1-215ENST00000514093 CTDNEP1O95476 244 aa22.33■■□□□ 1.17
SQSTM1-215ENST00000514093 NAMPTP43490 491 aa22.33■■□□□ 1.17
SQSTM1-215ENST00000514093 SOX9P48436 509 aa22.33■■□□□ 1.17
SQSTM1-215ENST00000514093 OSTNP61366 133 aa22.33■■□□□ 1.17
SQSTM1-215ENST00000514093 ATF7IP2Q5U623 682 aa22.33■■□□□ 1.17
SQSTM1-215ENST00000514093 PADI6Q6TGC4 694 aa22.33■■□□□ 1.17
SQSTM1-215ENST00000514093 SPEM1Q8N4L4 309 aa22.33■■□□□ 1.17
SQSTM1-215ENST00000514093 CEP120Q8N960 986 aa22.33■■□□□ 1.17
SQSTM1-215ENST00000514093 ZNF512Q96ME7 567 aaPredicted RBP22.33■■□□□ 1.17
SQSTM1-215ENST00000514093 MTMR9Q96QG7 549 aa22.33■■□□□ 1.17
SQSTM1-215ENST00000514093 C2orf42Q9NWW7 574 aa22.33■■□□□ 1.17
SQSTM1-215ENST00000514093 CEP72Q9P209 647 aa22.33■■□□□ 1.17
SQSTM1-215ENST00000514093 ORC3Q9UBD5 711 aaPredicted RBP22.33■■□□□ 1.17
SQSTM1-215ENST00000514093 FBXL5Q9UKA1 691 aa22.33■■□□□ 1.17
SQSTM1-215ENST00000514093 CHD6Q8TD26 2715 aa22.33■■□□□ 1.16
SQSTM1-215ENST00000514093 NEMFO60524 1076 aa22.32■■□□□ 1.16
SQSTM1-215ENST00000514093 TWF1Q12792 350 aa22.32■■□□□ 1.16
SQSTM1-215ENST00000514093 TEAD2Q15562 447 aa22.32■■□□□ 1.16
SQSTM1-215ENST00000514093 IQCEQ6IPM2 695 aa22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms