RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 LINC00854A0A1B0GVQ3 168 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 PCCAP05165 728 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 PRR29P0C7W0 189 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 PCP11498 1178 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 PSMC6P62333 389 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 HABP4Q5JVS0 413 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 LRRC49Q8IUZ0 686 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 LCORLQ8N3X6 602 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 CMTM5Q96DZ9 223 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 ZNF577Q9BSK1 485 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 THTPAQ9BU02 230 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 IL25Q9H293 177 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 RUBCNLQ9H714 662 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 ZWILCHQ9H900 591 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 AMACRQ9UHK6 382 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 CRB1P82279 1406 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 CPS1P31327 1500 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 SPDYE2BA6NHP3 402 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 CFAP99D6REC4 459 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 ZNF185O15231 689 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 PRPF3O43395 683 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 SPDYE6P0CI01 402 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 TAC1P20366 129 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 OLR1P78380 273 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 CAV1Q03135 178 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 THOC5Q13769 683 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 TSC22D1Q15714 1073 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 DNAJC12Q9UKB3 198 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 DTNAQ9Y4J8 743 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 MAP3K15Q6ZN16 1313 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 PHF20L1A8MW92 1017 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 FOXN1O15353 648 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 IDH3BO43837 385 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 ENO1P06733 434 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 SOX6P35712 828 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 ARL4AP40617 200 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 RPS6P62753 249 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 KLHL38Q2WGJ6 581 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 LVRNQ6Q4G3 990 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 MICALL2Q8IY33 904 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 EXT2Q93063 718 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 TRAPPC9Q96Q05 1148 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 BHMT2Q9H2M3 363 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 RANBP17Q9H2T7 1088 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 DCLRE1BQ9H816 532 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 KMT5AQ9NQR1 393 aa9.17□□□□□ -0.94
LIMCH1-218ENST00000513024 SYNGAP1Q96PV0 1343 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 LIFRP42702 1097 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 FCGRTP55899 365 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 ARL4CP56559 192 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 TAF1BQ53T94 588 aaPredicted RBP9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 FAM83BQ5T0W9 1011 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 CYP4A22Q5TCH4 519 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 OR6B2Q6IFH4 312 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 URGCPQ8TCY9 931 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 RUBCNQ92622 972 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 BPIFA3Q9BQP9 254 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 ADAM33Q9BZ11 813 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 VCPKMTQ9H867 229 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 IARS2Q9NSE4 1012 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 SENP1Q9P0U3 644 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 DIS3Q9Y2L1 958 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 C1orf232A0A0U1RR37 186 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 MIF4GDA9UHW6 222 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 ERVV-1B6SEH8 477 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 HMGB3O15347 200 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 PRPSAP2O60256 369 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 CDC40O60508 579 aaKnown RBP eCLIP9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 PLEKHA8P1O95397 391 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 ASNSP08243 561 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 CCNCP24863 283 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 COPS2P61201 443 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 UBE2SQ16763 222 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 SYCP2LQ5T4T6 812 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 ARHGAP17Q68EM7 881 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 TMED8Q6PL24 325 aaPredicted RBP9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 ZNF786Q8N393 782 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 BBS5Q8N3I7 341 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 CDC26Q8NHZ8 85 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 FAF2Q96CS3 445 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 XPO6Q96QU8 1125 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 ALG13Q9NP73 1137 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 CNOT8Q9UFF9 292 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 SEPT9Q9UHD8 586 aaPredicted RBP9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 WBP11Q9Y2W2 641 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 CCDC189A1A4V9 331 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 SAC3D1A6NKF1 404 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 CBFA2T3O75081 653 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 CLASP2O75122 1294 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 PGM3O95394 542 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 HSPA1AP0DMV8 641 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 HSPA1BP0DMV9 641 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 MMP14P50281 582 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 SEC24CP53992 1094 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 CCZ1BP86790 482 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 CCZ1P86791 482 aaPredicted RBP9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 OTUD4Q01804 1114 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 GRAPQ13588 217 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 CDO1Q16878 200 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 FAM160B2Q86V87 743 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms