RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 CETN1Q12798 172 aa17.23■□□□□ 0.35
SQSTM1-213ENST00000510187 SPATS2Q86XZ4 545 aaKnown RBP17.23■□□□□ 0.35
SQSTM1-213ENST00000510187 RHOT2Q8IXI1 618 aa17.23■□□□□ 0.35
SQSTM1-213ENST00000510187 SLC35G2Q8TBE7 412 aa17.23■□□□□ 0.35
SQSTM1-213ENST00000510187 KATNAL1Q9BW62 490 aa17.23■□□□□ 0.35
SQSTM1-213ENST00000510187 POLR3FQ9H1D9 316 aaPredicted RBP17.23■□□□□ 0.35
SQSTM1-213ENST00000510187 TMBIM4Q9HC24 238 aa17.23■□□□□ 0.35
SQSTM1-213ENST00000510187 PLAAQ9Y263 795 aa17.23■□□□□ 0.35
SQSTM1-213ENST00000510187 COL1A2P08123 1366 aa17.22■□□□□ 0.35
SQSTM1-213ENST00000510187 TRIM66O15016 1216 aa17.22■□□□□ 0.35
SQSTM1-213ENST00000510187 PMM2O15305 246 aa17.22■□□□□ 0.35
SQSTM1-213ENST00000510187 DDX3YO15523 660 aaKnown RBP17.22■□□□□ 0.35
SQSTM1-213ENST00000510187 BUB1BO60566 1050 aaPredicted RBP17.22■□□□□ 0.35
SQSTM1-213ENST00000510187 TNFAIP3P21580 790 aa17.22■□□□□ 0.35
SQSTM1-213ENST00000510187 PSEN2P49810 448 aa17.22■□□□□ 0.35
SQSTM1-213ENST00000510187 PEX3P56589 373 aa17.22■□□□□ 0.35
SQSTM1-213ENST00000510187 DMP1Q13316 513 aaPredicted RBP17.22■□□□□ 0.35
SQSTM1-213ENST00000510187 SYCP3Q8IZU3 236 aa17.22■□□□□ 0.35
SQSTM1-213ENST00000510187 ARFGAP2Q8N6H7 521 aa17.22■□□□□ 0.35
SQSTM1-213ENST00000510187 JPH2Q9BR39 696 aaPredicted RBP17.22■□□□□ 0.35
SQSTM1-213ENST00000510187 AP1M1Q9BXS5 423 aa17.22■□□□□ 0.35
SQSTM1-213ENST00000510187 C17orf75Q9HAS0 396 aa17.22■□□□□ 0.35
SQSTM1-213ENST00000510187 USP20Q9Y2K6 914 aa17.22■□□□□ 0.35
SQSTM1-213ENST00000510187 GAS2O43903 313 aaKnown RBP17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 TRIM49P0CI25 452 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 TRIM49CP0CI26 452 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 HSD17B3P37058 310 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 CCT5P48643 541 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 RTP1P59025 263 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 BIRC3Q13489 604 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 GRIK4Q16099 956 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 CXCL17Q6UXB2 119 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 RUFY4Q6ZNE9 571 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 RNF180Q86T96 592 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 LRRC71Q8N4P6 559 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 KLHDC9Q8NEP7 349 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 LMO3Q8TAP4 145 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 PPM1EQ8WY54 764 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 ACCSQ96QU6 501 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 MTG1Q9BT17 334 aaPredicted RBP17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 DDX47Q9H0S4 455 aaKnown RBP17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 IKZF4Q9H2S9 585 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 ST6GALNAC4Q9H4F1 302 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 IGKV6-21A0A0C4DH24 114 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 GOLGA6L10A0A0M3HER8 536 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 CCDC169A6NNP5 214 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 H0YGN5 161 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 K7ENM7 598 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 HAS3O00219 553 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 C22orf31O95567 290 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 HSPA1AP0DMV8 641 aaKnown RBP17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 HSPA1BP0DMV9 641 aaKnown RBP17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 SMIM10L2AP0DMW4 78 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 SMIM10L2BP0DMW5 78 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 CST5P28325 142 aaPredicted RBP17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 ARL2P36404 184 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 LBX1P52954 281 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 MCCD1P59942 119 aaPredicted RBP17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 PTENP60484 403 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 POU5F1Q01860 360 aaKnown RBP17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 DRP2Q13474 957 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 TRADDQ15628 312 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 KCNA10Q16322 511 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 C11orf63Q6NUN7 778 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 EFCAB12Q6NXP0 572 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 B4GALNT4Q76KP1 1039 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 DNAAF5Q86Y56 855 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 KSR1Q8IVT5 923 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 SH2D3CQ8N5H7 860 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 SLC17A8Q8NDX2 589 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 PPP1R13LQ8WUF5 828 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 TCP11Q8WWU5 503 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 BSNDQ8WZ55 320 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 ZBTB10Q96DT7 871 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 IFT74Q96LB3 600 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 AGPAT1Q99943 283 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 RAB17Q9H0T7 212 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 SETD4Q9NVD3 440 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 UTP11Q9Y3A2 253 aaKnown RBP17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 NFS1Q9Y697 457 aa17.21■□□□□ 0.35
SQSTM1-213ENST00000510187 RRN3P2A6NIE6 340 aa17.2■□□□□ 0.34
SQSTM1-213ENST00000510187 MIF4GDA9UHW6 222 aaKnown RBP17.2■□□□□ 0.34
SQSTM1-213ENST00000510187 MAGEB2O15479 319 aa17.2■□□□□ 0.34
SQSTM1-213ENST00000510187 CPP00450 1065 aa17.2■□□□□ 0.34
SQSTM1-213ENST00000510187 MYCP01106 439 aaPredicted RBP17.2■□□□□ 0.34
SQSTM1-213ENST00000510187 ASGR1P07306 291 aa17.2■□□□□ 0.34
SQSTM1-213ENST00000510187 MYZAPP0CAP1 466 aa17.2■□□□□ 0.34
SQSTM1-213ENST00000510187 NPTX2P47972 431 aa17.2■□□□□ 0.34
SQSTM1-213ENST00000510187 SMTNP53814 917 aa17.2■□□□□ 0.34
SQSTM1-213ENST00000510187 PDCLQ13371 301 aa17.2■□□□□ 0.34
SQSTM1-213ENST00000510187 CEP85LQ5SZL2 805 aa17.2■□□□□ 0.34
SQSTM1-213ENST00000510187 IER5Q5VY09 327 aa17.2■□□□□ 0.34
SQSTM1-213ENST00000510187 LHX8Q68G74 356 aa17.2■□□□□ 0.34
SQSTM1-213ENST00000510187 CTU1Q7Z7A3 348 aaKnown RBP17.2■□□□□ 0.34
SQSTM1-213ENST00000510187 PCSK9Q8NBP7 692 aaKnown RBP17.2■□□□□ 0.34
SQSTM1-213ENST00000510187 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.2■□□□□ 0.348e-8■■■■□ 21.6
SQSTM1-213ENST00000510187 PLEKHA4Q9H4M7 779 aa17.2■□□□□ 0.34
SQSTM1-213ENST00000510187 OSGEPQ9NPF4 335 aa17.2■□□□□ 0.34
SQSTM1-213ENST00000510187 KMT5AQ9NQR1 393 aa17.2■□□□□ 0.34
SQSTM1-213ENST00000510187 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.2■□□□□ 0.345e-6■■■□□ 15.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms