RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 GPTP24298 496 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 CASP4P49662 377 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 PRKAA2P54646 552 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 RABGAP1LQ5R372 815 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 IFIT1BQ5T764 474 aaKnown RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 PMF1Q6P1K2 205 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 ZNF280BQ86YH2 543 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 BBS5Q8N3I7 341 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 DRAXINQ8NBI3 349 aaPredicted RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 AP3S1Q92572 193 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 ARHGEF1Q92888 912 aaKnown RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 HDAC11Q96DB2 347 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 NSL1Q96IY1 281 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 PLIN2Q99541 437 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 EPAS1Q99814 870 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 APOL2Q9BQE5 337 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 ZNF556Q9HAH1 456 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 ABCB6Q9NP58 842 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 CCNB1IP1Q9NPC3 277 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 COX16Q9P0S2 106 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 KIAA1468Q9P260 1216 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 RABL2AQ9UBK7 228 aaPredicted RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 RWDD2AQ9UIY3 292 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 KCNH3Q9ULD8 1083 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 ITM2BQ9Y287 266 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 TMEM5Q9Y2B1 443 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 TPRKBQ9Y3C4 175 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 ABCA3Q99758 1704 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 IRGMA1A4Y4 181 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 FAM25EA8MYX2 175 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 ZNF879B4DU55 563 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 NOS1APO75052 506 aaPredicted RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 PEX14O75381 377 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 USP1O94782 785 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 NOL4O94818 638 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 PENKP01210 267 aaPredicted RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 PAMP19021 973 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 RXRAP19793 462 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 GPD2P43304 727 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 PPP3CCP48454 512 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 RARSP54136 660 aaKnown RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 HIRAP54198 1017 aaPredicted RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 CACNA2D1P54289 1103 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 MARSP56192 900 aaKnown RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 NAA20P61599 178 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 DNM1Q05193 864 aaKnown RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 C1DQ13901 141 aaKnown RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 NCF4Q15080 339 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 RWDD4Q6NW29 188 aaKnown RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 C1orf228Q6PIY5 440 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 COL23A1Q86Y22 540 aaPredicted RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 MICU2Q8IYU8 434 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 APPL2Q8NEU8 664 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 FAR1Q8WVX9 515 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 ESR2Q92731 530 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 AP1S3Q96PC3 154 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 AIFM2Q9BRQ8 373 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 ZNF692Q9BU19 519 aaPredicted RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 DHX36Q9H2U1 1008 aaKnown RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 CYP4F11Q9HBI6 524 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 MRPL47Q9HD33 250 aaKnown RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 SEC31BQ9NQW1 1179 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 ARHGEF3Q9NR81 526 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 FAM153AQ9UHL3 310 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 VPS4AQ9UN37 437 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 NPC1L1Q9UHC9 1359 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 TRPM1Q7Z4N2 1603 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 EXOC1LA0A1B0GW35 172 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 WRBO00258 174 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 WWP2O00308 870 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 COPEO14579 308 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 KCNK3O14649 394 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 RNMTO43148 476 aaKnown RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 DEXIO95424 95 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 HSPA4LO95757 839 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 PDGFRBP09619 1106 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 CMA1P23946 247 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 S100A2P29034 98 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 GJC1P36383 396 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 ACLYP53396 1101 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 RAD23AP54725 363 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 PTPN12Q05209 780 aaKnown RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 XRCC4Q13426 336 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 PRKG1Q13976 671 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 CARTPTQ16568 116 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 PHKG1Q16816 387 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 LPCAT2Q7L5N7 544 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 EPM2AIP1Q7L775 607 aaPredicted RBP3.75□□□□□ -1.81
USP53-205ENST00000509769 PLA2G4DQ86XP0 818 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 ARHGEF19Q8IW93 802 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 AMER2Q8N7J2 671 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 NEDD1Q8NHV4 660 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 IL17RAQ96F46 866 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 CCT8L2Q96SF2 557 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 SLC39A3Q9BRY0 314 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 BBS2Q9BXC9 721 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 MYLK2Q9H1R3 596 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 QPCTLQ9NXS2 382 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 TAS2R1Q9NYW7 299 aa3.75□□□□□ -1.81
USP53-205ENST00000509769 SPATA7Q9P0W8 599 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms