RNA–Protein interactions for RNA: ENST00000509388.5

RNF4-213, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-213ENST00000509388 FANCLQ9NW38 375 aa16.04■□□□□ 0.16
RNF4-213ENST00000509388 DNAJB4Q9UDY4 337 aa16.04■□□□□ 0.16
RNF4-213ENST00000509388 TUBGCP4Q9UGJ1 667 aa16.04■□□□□ 0.16
RNF4-213ENST00000509388 PRG3Q9Y2Y8 225 aaPredicted RBP16.04■□□□□ 0.16
RNF4-213ENST00000509388 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.04■□□□□ 0.16
RNF4-213ENST00000509388 KCNJ18B7U540 433 aa16.03■□□□□ 0.16
RNF4-213ENST00000509388 PODXLO00592 558 aa16.03■□□□□ 0.16
RNF4-213ENST00000509388 NRP1O14786 923 aa16.03■□□□□ 0.16
RNF4-213ENST00000509388 TADA2AO75478 443 aa16.03■□□□□ 0.16
RNF4-213ENST00000509388 GALTP07902 379 aa16.03■□□□□ 0.16
RNF4-213ENST00000509388 TRIM49P0CI25 452 aa16.03■□□□□ 0.16
RNF4-213ENST00000509388 TRIM49CP0CI26 452 aa16.03■□□□□ 0.16
RNF4-213ENST00000509388 CTNNB1P35222 781 aa16.03■□□□□ 0.16
RNF4-213ENST00000509388 PPM1AP35813 382 aa16.03■□□□□ 0.16
RNF4-213ENST00000509388 SLC11A1P49279 550 aa16.03■□□□□ 0.16
RNF4-213ENST00000509388 CLCNKBP51801 687 aa16.03■□□□□ 0.16
RNF4-213ENST00000509388 DLG4P78352 724 aa16.03■□□□□ 0.16
RNF4-213ENST00000509388 TRPC3Q13507 836 aa16.03■□□□□ 0.16
RNF4-213ENST00000509388 KCNJ12Q14500 433 aa16.03■□□□□ 0.16
RNF4-213ENST00000509388 FAM200AQ8TCP9 573 aa16.03■□□□□ 0.16
RNF4-213ENST00000509388 TGS1Q96RS0 853 aaKnown RBP16.03■□□□□ 0.16
RNF4-213ENST00000509388 GOLGA2P5Q9HBQ8 144 aa16.03■□□□□ 0.16
RNF4-213ENST00000509388 CBX8Q9HC52 389 aa16.03■□□□□ 0.16
RNF4-213ENST00000509388 HCSTQ9UBK5 93 aa16.03■□□□□ 0.16
RNF4-213ENST00000509388 MTUS1Q9ULD2 1270 aa16.03■□□□□ 0.16
RNF4-213ENST00000509388 NUB1Q9Y5A7 615 aa16.03■□□□□ 0.16
RNF4-213ENST00000509388 NT5C1B-RDH14C9J2C7 533 aa16.02■□□□□ 0.16
RNF4-213ENST00000509388 B3GAT3O94766 335 aa16.02■□□□□ 0.16
RNF4-213ENST00000509388 ITGB3P05106 788 aa16.02■□□□□ 0.16
RNF4-213ENST00000509388 EEF1GP26641 437 aaKnown RBP16.02■□□□□ 0.16
RNF4-213ENST00000509388 GTF2H1P32780 548 aa16.02■□□□□ 0.16
RNF4-213ENST00000509388 BMPR1AP36894 532 aa16.02■□□□□ 0.16
RNF4-213ENST00000509388 GCLMP48507 274 aa16.02■□□□□ 0.16
RNF4-213ENST00000509388 GUCY2FP51841 1108 aa16.02■□□□□ 0.16
RNF4-213ENST00000509388 MARSP56192 900 aaKnown RBP16.02■□□□□ 0.16
RNF4-213ENST00000509388 RBP5P82980 135 aa16.02■□□□□ 0.16
RNF4-213ENST00000509388 KRT17Q04695 432 aa16.02■□□□□ 0.16
RNF4-213ENST00000509388 SOX4Q06945 474 aaPredicted RBP16.02■□□□□ 0.16
RNF4-213ENST00000509388 CETN1Q12798 172 aa16.02■□□□□ 0.16
RNF4-213ENST00000509388 NAB2Q15742 525 aa16.02■□□□□ 0.16
RNF4-213ENST00000509388 DCLRE1AQ6PJP8 1040 aa16.02■□□□□ 0.16
RNF4-213ENST00000509388 TRAPPC11Q7Z392 1133 aa16.02■□□□□ 0.16
RNF4-213ENST00000509388 COLGALT1Q8NBJ5 622 aa16.02■□□□□ 0.16
RNF4-213ENST00000509388 OR5B17Q8NGF7 314 aa16.02■□□□□ 0.16
RNF4-213ENST00000509388 PLEKHO2Q8TD55 490 aa16.02■□□□□ 0.16
RNF4-213ENST00000509388 RABGGTAQ92696 567 aa16.02■□□□□ 0.16
RNF4-213ENST00000509388 CLP1Q92989 425 aaKnown RBP16.02■□□□□ 0.16
RNF4-213ENST00000509388 BORCS6Q96GS4 357 aa16.02■□□□□ 0.16
RNF4-213ENST00000509388 TMEM169Q96HH4 297 aa16.02■□□□□ 0.16
RNF4-213ENST00000509388 SPG21Q9NZD8 308 aa16.02■□□□□ 0.16
RNF4-213ENST00000509388 ITGA11Q9UKX5 1188 aa16.02■□□□□ 0.16
RNF4-213ENST00000509388 AGAP1Q9UPQ3 857 aa16.02■□□□□ 0.16
RNF4-213ENST00000509388 TNRC18O15417 2968 aaPredicted RBP16.02■□□□□ 0.15
RNF4-213ENST00000509388 PES1O00541 588 aaKnown RBP16.01■□□□□ 0.15
RNF4-213ENST00000509388 RB1P06400 928 aa16.01■□□□□ 0.15
RNF4-213ENST00000509388 PRKCSHP14314 528 aaPredicted RBP16.01■□□□□ 0.15
RNF4-213ENST00000509388 LRPAP1P30533 357 aa16.01■□□□□ 0.15
RNF4-213ENST00000509388 PBX3P40426 434 aa16.01■□□□□ 0.15
RNF4-213ENST00000509388 MXI1P50539 228 aa16.01■□□□□ 0.15
RNF4-213ENST00000509388 CLDN10P78369 228 aa16.01■□□□□ 0.15
RNF4-213ENST00000509388 TAP1Q03518 808 aa16.01■□□□□ 0.15
RNF4-213ENST00000509388 UPP1Q16831 310 aa16.01■□□□□ 0.15
RNF4-213ENST00000509388 TCP11X2Q5H9J9 407 aa16.01■□□□□ 0.15
RNF4-213ENST00000509388 C9orf57Q5W0N0 161 aa16.01■□□□□ 0.15
RNF4-213ENST00000509388 KRT39Q6A163 491 aa16.01■□□□□ 0.15
RNF4-213ENST00000509388 TRIM59Q8IWR1 403 aa16.01■□□□□ 0.15
RNF4-213ENST00000509388 DHX40Q8IX18 779 aaKnown RBP16.01■□□□□ 0.15
RNF4-213ENST00000509388 CCDC150Q8NCX0 1101 aa16.01■□□□□ 0.15
RNF4-213ENST00000509388 C17orf80Q9BSJ5 609 aa16.01■□□□□ 0.15
RNF4-213ENST00000509388 PLVAPQ9BX97 442 aa16.01■□□□□ 0.15
RNF4-213ENST00000509388 CERS4Q9HA82 394 aa16.01■□□□□ 0.15
RNF4-213ENST00000509388 TMEM8AQ9HCN3 771 aa16.01■□□□□ 0.15
RNF4-213ENST00000509388 CACNG4Q9UBN1 327 aa16.01■□□□□ 0.15
RNF4-213ENST00000509388 PUF60Q9UHX1 559 aaKnown RBP16.01■□□□□ 0.15
RNF4-213ENST00000509388 PTPRJQ12913 1337 aa16■□□□□ 0.15
RNF4-213ENST00000509388 TRAPPC3O43617 180 aa16■□□□□ 0.15
RNF4-213ENST00000509388 B4GALT3O60512 393 aa16■□□□□ 0.15
RNF4-213ENST00000509388 N4BP1O75113 896 aaKnown RBP16■□□□□ 0.15
RNF4-213ENST00000509388 AFPP02771 609 aaKnown RBP16■□□□□ 0.15
RNF4-213ENST00000509388 POLR2BP30876 1174 aaKnown RBP16■□□□□ 0.15
RNF4-213ENST00000509388 PNPLA4P41247 253 aa16■□□□□ 0.15
RNF4-213ENST00000509388 ERVK-21P61565 698 aa16■□□□□ 0.15
RNF4-213ENST00000509388 PPP3CAQ08209 521 aa16■□□□□ 0.15
RNF4-213ENST00000509388 MYO1EQ12965 1108 aa16■□□□□ 0.15
RNF4-213ENST00000509388 NCAPHQ15003 741 aa16■□□□□ 0.15
RNF4-213ENST00000509388 IQCB1Q15051 598 aa16■□□□□ 0.15
RNF4-213ENST00000509388 EPC2Q52LR7 807 aa16■□□□□ 0.15
RNF4-213ENST00000509388 SV2AQ7L0J3 742 aa16■□□□□ 0.15
RNF4-213ENST00000509388 LUZP1Q86V48 1076 aa16■□□□□ 0.15
RNF4-213ENST00000509388 IRF2BP1Q8IU81 584 aa16■□□□□ 0.15
RNF4-213ENST00000509388 SLC39A11Q8N1S5 342 aa16■□□□□ 0.15
RNF4-213ENST00000509388 C1orf127Q8N9H9 656 aa16■□□□□ 0.15
RNF4-213ENST00000509388 ARNTL2Q8WYA1 636 aa16■□□□□ 0.15
RNF4-213ENST00000509388 ZNF516Q92618 1163 aa16■□□□□ 0.15
RNF4-213ENST00000509388 SLC35C1Q96A29 364 aa16■□□□□ 0.15
RNF4-213ENST00000509388 IGSF21Q96ID5 467 aa16■□□□□ 0.15
RNF4-213ENST00000509388 FAM84AQ96KN4 292 aa16■□□□□ 0.15
RNF4-213ENST00000509388 ZNF560Q96MR9 790 aa16■□□□□ 0.15
RNF4-213ENST00000509388 PAAF1Q9BRP4 392 aa16■□□□□ 0.15
RNF4-213ENST00000509388 TUBGCP2Q9BSJ2 902 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms