RNA–Protein interactions for RNA: ENST00000502394.1

MATR3-231, Transcript of matrin 3, human

TSL 4

Gene MATR3, Length 589 nt, Biotype non stop decay, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-231	ENST00000502394	FBXL13	Q8NEE6	735 aa		13.13	□□□□□ -0.31
MATR3-231	ENST00000502394	NEK11	Q8NG66	645 aa		13.13	□□□□□ -0.31
MATR3-231	ENST00000502394	TSPAN18	Q96SJ8	248 aa		13.13	□□□□□ -0.31
MATR3-231	ENST00000502394	ADAM2	Q99965	735 aa		13.13	□□□□□ -0.31
MATR3-231	ENST00000502394	NAA15	Q9BXJ9	866 aa	Known RBP	13.13	□□□□□ -0.31
MATR3-231	ENST00000502394	IFIH1	Q9BYX4	1025 aa	Known RBP	13.13	□□□□□ -0.31
MATR3-231	ENST00000502394	TRIM6	Q9C030	488 aa	Predicted RBP	13.13	□□□□□ -0.31
MATR3-231	ENST00000502394	MMRN2	Q9H8L6	949 aa		13.13	□□□□□ -0.31
MATR3-231	ENST00000502394	RGS18	Q9NS28	235 aa		13.13	□□□□□ -0.31
MATR3-231	ENST00000502394	FAM207A	Q9NSI2	230 aa	Predicted RBP	13.13	□□□□□ -0.31
MATR3-231	ENST00000502394	RAB20	Q9NX57	234 aa		13.13	□□□□□ -0.31
MATR3-231	ENST00000502394	CEP72	Q9P209	647 aa		13.13	□□□□□ -0.31
MATR3-231	ENST00000502394	DAAM1	Q9Y4D1	1078 aa		13.13	□□□□□ -0.31
MATR3-231	ENST00000502394	CIT	O14578	2027 aa		13.13	□□□□□ -0.31
MATR3-231	ENST00000502394	AKR1B15	C9JRZ8	316 aa	Predicted RBP	13.12	□□□□□ -0.31
MATR3-231	ENST00000502394	DPYSL4	O14531	572 aa		13.12	□□□□□ -0.31
MATR3-231	ENST00000502394	KIAA0355	O15063	1070 aa		13.12	□□□□□ -0.31
MATR3-231	ENST00000502394	INPPL1	O15357	1258 aa		13.12	□□□□□ -0.31
MATR3-231	ENST00000502394	HLA-DRA	P01903	254 aa		13.12	□□□□□ -0.31
MATR3-231	ENST00000502394	UCHL3	P15374	230 aa		13.12	□□□□□ -0.31
MATR3-231	ENST00000502394	KCNE1	P15382	129 aa		13.12	□□□□□ -0.31
MATR3-231	ENST00000502394	TRIM21	P19474	475 aa	Known RBP	13.12	□□□□□ -0.31
MATR3-231	ENST00000502394	CYP2C18	P33260	490 aa		13.12	□□□□□ -0.31
MATR3-231	ENST00000502394	LSM11	P83369	360 aa	Known RBP eCLIP	13.12	□□□□□ -0.31	1e-6	■□□□□ 10.9
MATR3-231	ENST00000502394	GOLGA8F	Q08AF8	430 aa		13.12	□□□□□ -0.31
MATR3-231	ENST00000502394	GOLGA8DP	Q0D2H9	430 aa		13.12	□□□□□ -0.31
MATR3-231	ENST00000502394	DUOXA2	Q1HG44	320 aa		13.12	□□□□□ -0.31
MATR3-231	ENST00000502394	HS1BP3	Q53T59	392 aa		13.12	□□□□□ -0.31
MATR3-231	ENST00000502394	AGMO	Q6ZNB7	445 aa		13.12	□□□□□ -0.31
MATR3-231	ENST00000502394	TRAPPC11	Q7Z392	1133 aa		13.12	□□□□□ -0.31
MATR3-231	ENST00000502394	C1orf127	Q8N9H9	656 aa		13.12	□□□□□ -0.31
MATR3-231	ENST00000502394	CCDC150	Q8NCX0	1101 aa		13.12	□□□□□ -0.31
MATR3-231	ENST00000502394	DBF4B	Q8NFT6	615 aa		13.12	□□□□□ -0.31
MATR3-231	ENST00000502394	CACTIN	Q8WUQ7	758 aa	Known RBP	13.12	□□□□□ -0.31
MATR3-231	ENST00000502394	ZMAT2	Q96NC0	199 aa	Known RBP	13.12	□□□□□ -0.31
MATR3-231	ENST00000502394	DNAJC7	Q99615	494 aa		13.12	□□□□□ -0.31
MATR3-231	ENST00000502394	FTHL17	Q9BXU8	183 aa		13.12	□□□□□ -0.31
MATR3-231	ENST00000502394	MTMR12	Q9C0I1	747 aa		13.12	□□□□□ -0.31
MATR3-231	ENST00000502394	KCNF1	Q9H3M0	494 aa		13.12	□□□□□ -0.31
MATR3-231	ENST00000502394	SIX4	Q9UIU6	781 aa		13.12	□□□□□ -0.31
MATR3-231	ENST00000502394	AJAP1	Q9UKB5	411 aa	Predicted RBP	13.12	□□□□□ -0.31
MATR3-231	ENST00000502394	ARIH1	Q9Y4X5	557 aa	Predicted RBP	13.12	□□□□□ -0.31
MATR3-231	ENST00000502394	TET1	Q8NFU7	2136 aa		13.12	□□□□□ -0.31
MATR3-231	ENST00000502394	PDCD11	Q14690	1871 aa	Known RBP	13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	TRIM43B	A6NCK2	446 aa		13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	MEIS3P2	A8K0S8	358 aa		13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	PTGES	O14684	152 aa		13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	ZC3H11A	O75152	810 aa	Known RBP eCLIP	13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	AKAP5	P24588	427 aa		13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	HNRNPH3	P31942	346 aa	Known RBP	13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	YARS	P54577	528 aa	Known RBP	13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	ADK	P55263	362 aa	Known RBP	13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	JAM2	P57087	298 aa		13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	ZBED6	P86452	979 aa		13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	CETN1	Q12798	172 aa		13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	TMEM132D	Q14C87	1099 aa		13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	PHLDB3	Q6NSJ2	640 aa		13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	PDXDC1	Q6P996	788 aa		13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	PPFIBP1	Q86W92	1011 aa		13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	ECHDC2	Q86YB7	292 aa		13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	TMEM139	Q8IV31	216 aa		13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	CNGA4	Q8IV77	575 aa		13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	LRRC8A	Q8IWT6	810 aa		13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	GSTCD	Q8NEC7	633 aa		13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	HELQ	Q8TDG4	1101 aa		13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	APBB2	Q92870	758 aa		13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	TRIM43	Q96BQ3	446 aa	Predicted RBP	13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	SCLY	Q96I15	445 aa		13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	ANKRD36BP1	Q96IX9	119 aa		13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	PANX2	Q96RD6	677 aa		13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	PPP1R12C	Q9BZL4	782 aa		13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	XYLT2	Q9H1B5	865 aa		13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	TMEM39A	Q9NV64	488 aa		13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	APEX2	Q9UBZ4	518 aa		13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	MYO6	Q9UM54	1294 aa		13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	GIT1	Q9Y2X7	761 aa		13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	FHOD1	Q9Y613	1164 aa		13.11	□□□□□ -0.31
MATR3-231	ENST00000502394	SCN5A	Q14524	2016 aa		13.1	□□□□□ -0.31
MATR3-231	ENST00000502394	ALPK3	Q96L96	1907 aa		13.1	□□□□□ -0.31
MATR3-231	ENST00000502394	SMIM28	A0A1B0GU29	152 aa		13.1	□□□□□ -0.31
MATR3-231	ENST00000502394	CST3	P01034	146 aa	Predicted RBP	13.1	□□□□□ -0.31
MATR3-231	ENST00000502394	TMEM191B	P0C7N4	346 aa		13.1	□□□□□ -0.31
MATR3-231	ENST00000502394	SKI	P12755	728 aa		13.1	□□□□□ -0.31
MATR3-231	ENST00000502394	ITGA4	P13612	1032 aa		13.1	□□□□□ -0.31
MATR3-231	ENST00000502394	RFX1	P22670	979 aa		13.1	□□□□□ -0.31
MATR3-231	ENST00000502394	ITGB8	P26012	769 aa		13.1	□□□□□ -0.31
MATR3-231	ENST00000502394	RFC2	P35250	354 aa		13.1	□□□□□ -0.31
MATR3-231	ENST00000502394	KRT9	P35527	623 aa		13.1	□□□□□ -0.31
MATR3-231	ENST00000502394	CCL23	P55773	120 aa		13.1	□□□□□ -0.31
MATR3-231	ENST00000502394	POLR2F	P61218	127 aa	Known RBP	13.1	□□□□□ -0.31
MATR3-231	ENST00000502394	CCZ1B	P86790	482 aa		13.1	□□□□□ -0.31
MATR3-231	ENST00000502394	CCZ1	P86791	482 aa	Predicted RBP	13.1	□□□□□ -0.31
MATR3-231	ENST00000502394	TFAM	Q00059	246 aa	Known RBP	13.1	□□□□□ -0.31
MATR3-231	ENST00000502394	NCOA4	Q13772	614 aa		13.1	□□□□□ -0.31
MATR3-231	ENST00000502394	NAB2	Q15742	525 aa		13.1	□□□□□ -0.31
MATR3-231	ENST00000502394	MEA1	Q16626	185 aa		13.1	□□□□□ -0.31
MATR3-231	ENST00000502394	E4F1	Q66K89	784 aa	Predicted RBP	13.1	□□□□□ -0.31
MATR3-231	ENST00000502394	IQCE	Q6IPM2	695 aa		13.1	□□□□□ -0.31
MATR3-231	ENST00000502394	GJB7	Q6PEY0	223 aa		13.1	□□□□□ -0.31
MATR3-231	ENST00000502394	ARHGEF19	Q8IW93	802 aa		13.1	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms