RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 TTLL13PA6NNM8 815 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 EIF3CLB5ME19 914 aaKnown RBP5.46□□□□□ -1.54
USP54-216ENST00000498143 PDGFBP01127 241 aaPredicted RBP5.46□□□□□ -1.54
USP54-216ENST00000498143 CYP2E1P05181 493 aaPredicted RBP5.46□□□□□ -1.54
USP54-216ENST00000498143 MYF5P13349 255 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 DRD2P14416 443 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 MX2P20592 715 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 ZNF132P52740 706 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 INHBCP55103 352 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 UBE2HP62256 183 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 MRPS15P82914 257 aaKnown RBP5.46□□□□□ -1.54
USP54-216ENST00000498143 LAMC2Q13753 1193 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 LHX8Q68G74 356 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 ZNF449Q6P9G9 518 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 TMCO2Q7Z6W1 182 aaPredicted RBP5.46□□□□□ -1.54
USP54-216ENST00000498143 CTAGE6Q86UF2 777 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 TXNRD3Q86VQ6 643 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 ARHGAP18Q8N392 663 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 IRF7Q92985 503 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 FCRL3Q96P31 734 aaPredicted RBP5.46□□□□□ -1.54
USP54-216ENST00000498143 EIF3CQ99613 913 aaKnown RBP5.46□□□□□ -1.54
USP54-216ENST00000498143 KIFC3Q9BVG8 833 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 LMAN1LQ9HAT1 526 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 UBN1Q9NPG3 1134 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 RHBDL2Q9NX52 303 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 SUSD2Q9UGT4 822 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 FRMPD2Q68DX3 1309 aaPredicted RBP5.46□□□□□ -1.54
USP54-216ENST00000498143 SULT1B1O43704 296 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 RNF40O75150 1001 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 HOXC6P09630 235 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 CLUP10909 449 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 SCG2P13521 617 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 ABCB4P21439 1286 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 HOXA7P31268 230 aaPredicted RBP5.46□□□□□ -1.54
USP54-216ENST00000498143 CNR2P34972 360 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 SNX1Q13596 522 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 IQCB1Q15051 598 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 TKFCQ3LXA3 575 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 C6orf163Q5TEZ5 329 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 TADA2BQ86TJ2 420 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 CCDC105Q8IYK2 499 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 EFHBQ8N7U6 833 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 TRIM58Q8NG06 486 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 HAUS8Q9BT25 410 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 LSM14BQ9BX40 385 aaKnown RBP5.46□□□□□ -1.54
USP54-216ENST00000498143 YIPF3Q9GZM5 350 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 CSRNP2Q9H175 543 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 ADAM7Q9H2U9 754 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 CNNM2Q9H8M5 875 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 PCDH12Q9NPG4 1184 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 GGT7Q9UJ14 662 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 GTF3C4Q9UKN8 822 aa5.46□□□□□ -1.54
USP54-216ENST00000498143 PAPPA2Q9BXP8 1791 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 LRRIQ3A6PVS8 624 aaPredicted RBP5.45□□□□□ -1.54
USP54-216ENST00000498143 PHACTR2O75167 634 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 RPL17P18621 184 aaKnown RBP5.45□□□□□ -1.54
USP54-216ENST00000498143 POLR2EP19388 210 aaKnown RBP5.45□□□□□ -1.54
USP54-216ENST00000498143 PSEN2P49810 448 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 POLE2P56282 527 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 PDE1BQ01064 536 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 PTPN11Q06124 597 aaPredicted RBP5.45□□□□□ -1.54
USP54-216ENST00000498143 SCRN3Q0VDG4 424 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 TTF1Q15361 905 aaPredicted RBP5.45□□□□□ -1.54
USP54-216ENST00000498143 ALDH1L2Q3SY69 923 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 ALKBH2Q6NS38 261 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 CATSPERGQ6ZRH7 1159 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 DDX42Q86XP3 938 aaKnown RBP eCLIP5.45□□□□□ -1.54
USP54-216ENST00000498143 ANKRD49Q8WVL7 239 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 PDLIM2Q96JY6 352 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 TRIM55Q9BYV6 548 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 AASDHPPTQ9NRN7 309 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 SCHIP1Q9P0W5 487 aaPredicted RBP5.45□□□□□ -1.54
USP54-216ENST00000498143 GJD2Q9UKL4 321 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 CHMP2BQ9UQN3 213 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 NBASA2RRP1 2371 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 ATP6V1G1O75348 118 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 VPS4BO75351 444 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 MTA2O94776 668 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 COL6A1P12109 1028 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 BMP3P12645 472 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 FECHP22830 423 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 TUFMP49411 452 aaKnown RBP5.45□□□□□ -1.54
USP54-216ENST00000498143 ZNF165P49910 485 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 RIPPLY3P57055 190 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 GJA9P57773 515 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 TAGLNQ01995 201 aaKnown RBP5.45□□□□□ -1.54
USP54-216ENST00000498143 IFRD2Q12894 506 aaPredicted RBP5.45□□□□□ -1.54
USP54-216ENST00000498143 PPFIA1Q13136 1202 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 TCEAL1Q15170 157 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 CCDC153Q494R4 210 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 LPCAT2Q7L5N7 544 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 SRRM1Q8IYB3 904 aaKnown RBP5.45□□□□□ -1.54
USP54-216ENST00000498143 FAM186BQ8IYM0 893 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 CACNA2D3Q8IZS8 1091 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 C12orf76Q8N812 135 aaPredicted RBP5.45□□□□□ -1.54
USP54-216ENST00000498143 ERMNQ8TAM6 284 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 PGBD4Q96DM1 585 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 KIF1BPQ96EK5 621 aa5.45□□□□□ -1.54
USP54-216ENST00000498143 THOC1Q96FV9 657 aaKnown RBP5.45□□□□□ -1.54
USP54-216ENST00000498143 FAM84BQ96KN1 310 aaPredicted RBP5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms