RNA–Protein interactions for RNA: ENST00000497488.1

BRCA1-224, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-224ENST00000497488 PNLIPRP1P54315 467 aa6.83□□□□□ -1.32
BRCA1-224ENST00000497488 POLE2P56282 527 aa6.83□□□□□ -1.32
BRCA1-224ENST00000497488 ROM1Q03395 351 aa6.83□□□□□ -1.32
BRCA1-224ENST00000497488 FSTL1Q12841 308 aa6.83□□□□□ -1.32
BRCA1-224ENST00000497488 PPP2R5CQ13362 524 aa6.83□□□□□ -1.32
BRCA1-224ENST00000497488 CHRNA2Q15822 529 aa6.83□□□□□ -1.32
BRCA1-224ENST00000497488 AOC3Q16853 763 aa6.83□□□□□ -1.32
BRCA1-224ENST00000497488 ARHGAP15Q53QZ3 475 aa6.83□□□□□ -1.32
BRCA1-224ENST00000497488 EMC4Q5J8M3 183 aa6.83□□□□□ -1.32
BRCA1-224ENST00000497488 RNFT1Q5M7Z0 435 aa6.83□□□□□ -1.32
BRCA1-224ENST00000497488 MAP3K21Q5TCX8 1036 aa6.83□□□□□ -1.32
BRCA1-224ENST00000497488 RNF111Q6ZNA4 994 aa6.83□□□□□ -1.32
BRCA1-224ENST00000497488 CHSY3Q70JA7 882 aa6.83□□□□□ -1.32
BRCA1-224ENST00000497488 GAREM2Q75VX8 874 aa6.83□□□□□ -1.32
BRCA1-224ENST00000497488 RNF44Q7L0R7 432 aa6.83□□□□□ -1.32
BRCA1-224ENST00000497488 ZNF765Q7L2R6 523 aa6.83□□□□□ -1.32
BRCA1-224ENST00000497488 TSPYL5Q86VY4 417 aaPredicted RBP6.83□□□□□ -1.32
BRCA1-224ENST00000497488 HSCBQ8IWL3 235 aa6.83□□□□□ -1.32
BRCA1-224ENST00000497488 TMEM52Q8NDY8 209 aa6.83□□□□□ -1.32
BRCA1-224ENST00000497488 BRIX1Q8TDN6 353 aaKnown RBP6.83□□□□□ -1.32
BRCA1-224ENST00000497488 GAB3Q8WWW8 586 aa6.83□□□□□ -1.32
BRCA1-224ENST00000497488 RAB24Q969Q5 203 aa6.83□□□□□ -1.32
BRCA1-224ENST00000497488 SH3KBP1Q96B97 665 aa6.83□□□□□ -1.32
BRCA1-224ENST00000497488 P2RX7Q99572 595 aaKnown RBP6.83□□□□□ -1.32
BRCA1-224ENST00000497488 FOXB1Q99853 325 aa6.83□□□□□ -1.32
BRCA1-224ENST00000497488 DDX23Q9BUQ8 820 aaKnown RBP6.83□□□□□ -1.32
BRCA1-224ENST00000497488 DPH1Q9BZG8 443 aa6.83□□□□□ -1.32
BRCA1-224ENST00000497488 GPR63Q9BZJ6 419 aa6.83□□□□□ -1.32
BRCA1-224ENST00000497488 PRDM13Q9H4Q3 707 aa6.83□□□□□ -1.32
BRCA1-224ENST00000497488 SEPSECSQ9HD40 501 aaKnown RBP6.83□□□□□ -1.32
BRCA1-224ENST00000497488 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.83□□□□□ -1.32
BRCA1-224ENST00000497488 RGL1Q9NZL6 768 aa6.83□□□□□ -1.32
BRCA1-224ENST00000497488 PCDHA1Q9Y5I3 950 aa6.83□□□□□ -1.32
BRCA1-224ENST00000497488 FGD5Q6ZNL6 1462 aa6.83□□□□□ -1.32
BRCA1-224ENST00000497488 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.82□□□□□ -1.32
BRCA1-224ENST00000497488 TMEM82A0PJX8 343 aa6.82□□□□□ -1.32
BRCA1-224ENST00000497488 C19orf81C9J6K1 198 aa6.82□□□□□ -1.32
BRCA1-224ENST00000497488 HSPA4LO95757 839 aa6.82□□□□□ -1.32
BRCA1-224ENST00000497488 PREPP48147 710 aa6.82□□□□□ -1.32
BRCA1-224ENST00000497488 PRKAA2P54646 552 aa6.82□□□□□ -1.32
BRCA1-224ENST00000497488 ACTR2P61160 394 aa6.82□□□□□ -1.32
BRCA1-224ENST00000497488 TEKQ02763 1124 aa6.82□□□□□ -1.32
BRCA1-224ENST00000497488 MAP3K12Q12852 859 aa6.82□□□□□ -1.32
BRCA1-224ENST00000497488 TARDBPQ13148 414 aaKnown RBP eCLIP6.82□□□□□ -1.32
BRCA1-224ENST00000497488 STEAP3Q658P3 488 aa6.82□□□□□ -1.32
BRCA1-224ENST00000497488 RPUSD3Q6P087 351 aaKnown RBP6.82□□□□□ -1.32
BRCA1-224ENST00000497488 BBS12Q6ZW61 710 aa6.82□□□□□ -1.32
BRCA1-224ENST00000497488 CHD1LQ86WJ1 897 aa6.82□□□□□ -1.32
BRCA1-224ENST00000497488 GATAD2AQ86YP4 633 aa6.82□□□□□ -1.32
BRCA1-224ENST00000497488 LMNTD2Q8IXW0 634 aa6.82□□□□□ -1.32
BRCA1-224ENST00000497488 MFSD4AQ8N468 514 aa6.82□□□□□ -1.32
BRCA1-224ENST00000497488 NGEFQ8N5V2 710 aa6.82□□□□□ -1.32
BRCA1-224ENST00000497488 CDYL2Q8N8U2 506 aa6.82□□□□□ -1.32
BRCA1-224ENST00000497488 TTLL11Q8NHH1 800 aa6.82□□□□□ -1.32
BRCA1-224ENST00000497488 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.82□□□□□ -1.32
BRCA1-224ENST00000497488 EZH1Q92800 747 aaPredicted RBP6.82□□□□□ -1.32
BRCA1-224ENST00000497488 NEIL1Q96FI4 390 aaPredicted RBP6.82□□□□□ -1.32
BRCA1-224ENST00000497488 LRRC46Q96FV0 321 aa6.82□□□□□ -1.32
BRCA1-224ENST00000497488 TWNKQ96RR1 684 aa6.82□□□□□ -1.32
BRCA1-224ENST00000497488 PRPF18Q99633 342 aaKnown RBP6.82□□□□□ -1.32
BRCA1-224ENST00000497488 YIPF2Q9BWQ6 316 aa6.82□□□□□ -1.32
BRCA1-224ENST00000497488 MTG2Q9H4K7 406 aa6.82□□□□□ -1.32
BRCA1-224ENST00000497488 WDCPQ9H6R7 721 aa6.82□□□□□ -1.32
BRCA1-224ENST00000497488 ERVK13-1Q9NX77 482 aa6.82□□□□□ -1.32
BRCA1-224ENST00000497488 CALCOCO1Q9P1Z2 691 aa6.82□□□□□ -1.32
BRCA1-224ENST00000497488 ZC3H7BQ9UGR2 993 aaKnown RBP6.82□□□□□ -1.32
BRCA1-224ENST00000497488 ZHX1Q9UKY1 873 aaPredicted RBP6.82□□□□□ -1.32
BRCA1-224ENST00000497488 WASF3Q9UPY6 502 aa6.82□□□□□ -1.32
BRCA1-224ENST00000497488 CNPY2Q9Y2B0 182 aa6.82□□□□□ -1.32
BRCA1-224ENST00000497488 PCDHB6Q9Y5E3 794 aa6.82□□□□□ -1.32
BRCA1-224ENST00000497488 EIF4G3O43432 1585 aaKnown RBP6.82□□□□□ -1.32
BRCA1-224ENST00000497488 AQRO60306 1485 aaKnown RBP eCLIP6.81□□□□□ -1.32
BRCA1-224ENST00000497488 PRAMEF22A3QJZ6 481 aa6.81□□□□□ -1.32
BRCA1-224ENST00000497488 TK1P04183 234 aa6.81□□□□□ -1.32
BRCA1-224ENST00000497488 PORP16435 677 aaPredicted RBP6.81□□□□□ -1.32
BRCA1-224ENST00000497488 IL11P20809 199 aa6.81□□□□□ -1.32
BRCA1-224ENST00000497488 MALP21145 153 aa6.81□□□□□ -1.32
BRCA1-224ENST00000497488 RGS3P49796 1198 aa6.81□□□□□ -1.32
BRCA1-224ENST00000497488 CCR9P51686 369 aa6.81□□□□□ -1.32
BRCA1-224ENST00000497488 SNAPC2Q13487 334 aa6.81□□□□□ -1.32
BRCA1-224ENST00000497488 SCARB2Q14108 478 aa6.81□□□□□ -1.32
BRCA1-224ENST00000497488 RAB39AQ14964 217 aa6.81□□□□□ -1.32
BRCA1-224ENST00000497488 TARBP2Q15633 366 aaKnown RBP6.81□□□□□ -1.32
BRCA1-224ENST00000497488 ZNF827Q17R98 1081 aa6.81□□□□□ -1.32
BRCA1-224ENST00000497488 VWA3BQ502W6 1294 aa6.81□□□□□ -1.32
BRCA1-224ENST00000497488 CCDC178Q5BJE1 867 aa6.81□□□□□ -1.32
BRCA1-224ENST00000497488 PRAMEF18Q5VWM3 479 aa6.81□□□□□ -1.32
BRCA1-224ENST00000497488 RRAGBQ5VZM2 374 aa6.81□□□□□ -1.32
BRCA1-224ENST00000497488 ARL6IP4Q66PJ3 421 aaKnown RBP6.81□□□□□ -1.32
BRCA1-224ENST00000497488 ZPBP2Q6X784 338 aa6.81□□□□□ -1.32
BRCA1-224ENST00000497488 TMTC3Q6ZXV5 915 aa6.81□□□□□ -1.32
BRCA1-224ENST00000497488 UNC13DQ70J99 1090 aa6.81□□□□□ -1.32
BRCA1-224ENST00000497488 KDELC2Q7Z4H8 507 aa6.81□□□□□ -1.32
BRCA1-224ENST00000497488 GALNTL5Q7Z4T8 443 aa6.81□□□□□ -1.32
BRCA1-224ENST00000497488 MICU3Q86XE3 530 aa6.81□□□□□ -1.32
BRCA1-224ENST00000497488 PPP1R3BQ86XI6 285 aa6.81□□□□□ -1.32
BRCA1-224ENST00000497488 FMR1NBQ8N0W7 255 aaPredicted RBP6.81□□□□□ -1.32
BRCA1-224ENST00000497488 VGLL2Q8N8G2 317 aa6.81□□□□□ -1.32
BRCA1-224ENST00000497488 APPL2Q8NEU8 664 aa6.81□□□□□ -1.32
BRCA1-224ENST00000497488 OR1N1Q8NGS0 311 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms