RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 ZSCAN16Q9H4T2 348 aaPredicted RBP13.9□□□□□ -0.18
PTPRF-214ENST00000496043 POLIQ9UNA4 740 aa13.9□□□□□ -0.18
PTPRF-214ENST00000496043 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.9□□□□□ -0.18
PTPRF-214ENST00000496043 ZFP37Q9Y6Q3 630 aaPredicted RBP13.9□□□□□ -0.18
PTPRF-214ENST00000496043 K7ELQ4 463 aaPredicted RBP13.89□□□□□ -0.19
PTPRF-214ENST00000496043 K7ENM7 598 aa13.89□□□□□ -0.19
PTPRF-214ENST00000496043 OGTO15294 1046 aa13.89□□□□□ -0.19
PTPRF-214ENST00000496043 CCL16O15467 120 aa13.89□□□□□ -0.19
PTPRF-214ENST00000496043 MEFVO15553 781 aaPredicted RBP13.89□□□□□ -0.19
PTPRF-214ENST00000496043 PIGRP01833 764 aa13.89□□□□□ -0.19
PTPRF-214ENST00000496043 ELF1P32519 619 aa13.89□□□□□ -0.19
PTPRF-214ENST00000496043 TXLNAP40222 546 aa13.89□□□□□ -0.19
PTPRF-214ENST00000496043 VCPP55072 806 aaKnown RBP13.89□□□□□ -0.19
PTPRF-214ENST00000496043 GTF2BQ00403 316 aa13.89□□□□□ -0.19
PTPRF-214ENST00000496043 VARS2Q5ST30 1063 aaKnown RBP13.89□□□□□ -0.19
PTPRF-214ENST00000496043 FAM173BQ6P4H8 233 aa13.89□□□□□ -0.19
PTPRF-214ENST00000496043 RSPO2Q6UXX9 243 aaPredicted RBP13.89□□□□□ -0.19
PTPRF-214ENST00000496043 USP49Q70CQ1 688 aa13.89□□□□□ -0.19
PTPRF-214ENST00000496043 SV2BQ7L1I2 683 aa13.89□□□□□ -0.19
PTPRF-214ENST00000496043 ALYREFQ86V81 257 aaKnown RBP13.89□□□□□ -0.19
PTPRF-214ENST00000496043 SLC44A3Q8N4M1 653 aa13.89□□□□□ -0.19
PTPRF-214ENST00000496043 APPL2Q8NEU8 664 aa13.89□□□□□ -0.19
PTPRF-214ENST00000496043 PRSS33Q8NF86 280 aa13.89□□□□□ -0.19
PTPRF-214ENST00000496043 ZNF461Q8TAF7 563 aa13.89□□□□□ -0.19
PTPRF-214ENST00000496043 SLC7A14Q8TBB6 771 aa13.89□□□□□ -0.19
PTPRF-214ENST00000496043 RSAD2Q8WXG1 361 aa13.89□□□□□ -0.19
PTPRF-214ENST00000496043 KIF12Q96FN5 646 aa13.89□□□□□ -0.19
PTPRF-214ENST00000496043 SUSD3Q96L08 255 aa13.89□□□□□ -0.19
PTPRF-214ENST00000496043 HAPLN2Q9GZV7 340 aa13.89□□□□□ -0.19
PTPRF-214ENST00000496043 IRF2BPLQ9H1B7 796 aa13.89□□□□□ -0.19
PTPRF-214ENST00000496043 RPF1Q9H9Y2 349 aaKnown RBP13.89□□□□□ -0.19
PTPRF-214ENST00000496043 FOXD4L1Q9NU39 408 aa13.89□□□□□ -0.19
PTPRF-214ENST00000496043 FBXO2Q9UK22 296 aaPredicted RBP13.89□□□□□ -0.19
PTPRF-214ENST00000496043 FBXL21Q9UKT6 434 aa13.89□□□□□ -0.19
PTPRF-214ENST00000496043 DUSP12Q9UNI6 340 aa13.89□□□□□ -0.19
PTPRF-214ENST00000496043 TTC26A0AVF1 554 aa13.88□□□□□ -0.19
PTPRF-214ENST00000496043 LACTBL1A8MY62 500 aa13.88□□□□□ -0.19
PTPRF-214ENST00000496043 HNRNPDLO14979 420 aaKnown RBP13.88□□□□□ -0.19
PTPRF-214ENST00000496043 XPOTO43592 962 aaKnown RBP13.88□□□□□ -0.19
PTPRF-214ENST00000496043 ABLIM3O94929 683 aa13.88□□□□□ -0.19
PTPRF-214ENST00000496043 POU2F2P09086 479 aa13.88□□□□□ -0.19
PTPRF-214ENST00000496043 CXCL8P10145 99 aa13.88□□□□□ -0.19
PTPRF-214ENST00000496043 CYP3A5P20815 502 aa13.88□□□□□ -0.19
PTPRF-214ENST00000496043 NMT1P30419 496 aaKnown RBP13.88□□□□□ -0.19
PTPRF-214ENST00000496043 MCM4P33991 863 aa13.88□□□□□ -0.19
PTPRF-214ENST00000496043 ARPP19P56211 112 aa13.88□□□□□ -0.19
PTPRF-214ENST00000496043 PPP2R3AQ06190 1150 aa13.88□□□□□ -0.19
PTPRF-214ENST00000496043 MRPL58Q14197 206 aaKnown RBP13.88□□□□□ -0.19
PTPRF-214ENST00000496043 SLC39A14Q15043 492 aa13.88□□□□□ -0.19
PTPRF-214ENST00000496043 ZBTB6Q15916 424 aa13.88□□□□□ -0.19
PTPRF-214ENST00000496043 ASTLQ6HA08 431 aaPredicted RBP13.88□□□□□ -0.19
PTPRF-214ENST00000496043 SLC8B1Q6J4K2 584 aa13.88□□□□□ -0.19
PTPRF-214ENST00000496043 GET4Q7L5D6 327 aaPredicted RBP13.88□□□□□ -0.19
PTPRF-214ENST00000496043 CD302Q8IX05 232 aa13.88□□□□□ -0.19
PTPRF-214ENST00000496043 CLIC6Q96NY7 704 aa13.88□□□□□ -0.19
PTPRF-214ENST00000496043 STK17AQ9UEE5 414 aa13.88□□□□□ -0.19
PTPRF-214ENST00000496043 UBQLN1Q9UMX0 589 aaKnown RBP13.88□□□□□ -0.19
PTPRF-214ENST00000496043 MTMR6Q9Y217 621 aa13.88□□□□□ -0.19
PTPRF-214ENST00000496043 PLXNA3P51805 1871 aa13.87□□□□□ -0.19
PTPRF-214ENST00000496043 A0A0B4J269 797 aa13.87□□□□□ -0.19
PTPRF-214ENST00000496043 STX6O43752 255 aa13.87□□□□□ -0.19
PTPRF-214ENST00000496043 TBC1D4O60343 1298 aa13.87□□□□□ -0.19
PTPRF-214ENST00000496043 ADRB2P07550 413 aa13.87□□□□□ -0.19
PTPRF-214ENST00000496043 LRPAP1P30533 357 aa13.87□□□□□ -0.19
PTPRF-214ENST00000496043 TNFSF9P41273 254 aa13.87□□□□□ -0.19
PTPRF-214ENST00000496043 CLCN5P51795 746 aa13.87□□□□□ -0.19
PTPRF-214ENST00000496043 NTHL1P78549 312 aa13.87□□□□□ -0.19
PTPRF-214ENST00000496043 SPAG1Q07617 926 aa13.87□□□□□ -0.19
PTPRF-214ENST00000496043 CTXN3Q4LDR2 81 aa13.87□□□□□ -0.19
PTPRF-214ENST00000496043 SLFN12LQ6IEE8 588 aa13.87□□□□□ -0.19
PTPRF-214ENST00000496043 DYMQ7RTS9 669 aa13.87□□□□□ -0.19
PTPRF-214ENST00000496043 ZNF720Q7Z2F6 126 aa13.87□□□□□ -0.19
PTPRF-214ENST00000496043 DDX12PQ92771 950 aa13.87□□□□□ -0.19
PTPRF-214ENST00000496043 FAM212AQ96EL1 285 aa13.87□□□□□ -0.19
PTPRF-214ENST00000496043 FIZ1Q96SL8 496 aa13.87□□□□□ -0.19
PTPRF-214ENST00000496043 MSTO1Q9BUK6 570 aa13.87□□□□□ -0.19
PTPRF-214ENST00000496043 ST6GALNAC4Q9H4F1 302 aa13.87□□□□□ -0.19
PTPRF-214ENST00000496043 WNT16Q9UBV4 365 aa13.87□□□□□ -0.19
PTPRF-214ENST00000496043 FBXL5Q9UKA1 691 aa13.87□□□□□ -0.19
PTPRF-214ENST00000496043 CDH7Q9ULB5 785 aa13.87□□□□□ -0.19
PTPRF-214ENST00000496043 PCDHB8Q9UN66 801 aa13.87□□□□□ -0.19
PTPRF-214ENST00000496043 MORC2Q9Y6X9 1032 aaPredicted RBP13.87□□□□□ -0.19
PTPRF-214ENST00000496043 MUC6Q6W4X9 2439 aa13.87□□□□□ -0.19
PTPRF-214ENST00000496043 MTCL1Q9Y4B5 1905 aaKnown RBP13.87□□□□□ -0.19
PTPRF-214ENST00000496043 ANHXE9PGG2 379 aa13.86□□□□□ -0.19
PTPRF-214ENST00000496043 PRRG1O14668 218 aa13.86□□□□□ -0.19
PTPRF-214ENST00000496043 NARSO43776 548 aaKnown RBP13.86□□□□□ -0.19
PTPRF-214ENST00000496043 ATF2P15336 505 aa13.86□□□□□ -0.19
PTPRF-214ENST00000496043 PTPN2P17706 415 aa13.86□□□□□ -0.19
PTPRF-214ENST00000496043 ROR1Q01973 937 aa13.86□□□□□ -0.19
PTPRF-214ENST00000496043 TCF15Q12870 199 aa13.86□□□□□ -0.19
PTPRF-214ENST00000496043 ENOX2Q16206 610 aaKnown RBP13.86□□□□□ -0.19
PTPRF-214ENST00000496043 ZC2HC1CQ53FD0 456 aaPredicted RBP13.86□□□□□ -0.19
PTPRF-214ENST00000496043 TPGS2Q68CL5 300 aa13.86□□□□□ -0.19
PTPRF-214ENST00000496043 CCDC73Q6ZRK6 1079 aa13.86□□□□□ -0.19
PTPRF-214ENST00000496043 MAP4K3Q8IVH8 894 aa13.86□□□□□ -0.19
PTPRF-214ENST00000496043 FLCNQ8NFG4 579 aa13.86□□□□□ -0.19
PTPRF-214ENST00000496043 BEST2Q8NFU1 509 aa13.86□□□□□ -0.19
PTPRF-214ENST00000496043 USP28Q96RU2 1077 aa13.86□□□□□ -0.19
PTPRF-214ENST00000496043 PANK2Q9BZ23 570 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms