RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 TRABDQ9H4I3 376 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 PIDD1Q9HB75 910 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 EXOC1LA0A1B0GW35 172 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 A8MXQ7 604 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 H0Y3Z8 333 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 NDC80O14777 642 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 TYROBPO43914 113 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 DNAJC6O75061 913 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 TROVE2P10155 538 aaKnown RBP eCLIP10.28□□□□□ -0.76
SYNE1-230ENST00000495090 GCAP28676 217 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 MAGEA4P43358 317 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 PSMC4P43686 418 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 CYP2J2P51589 502 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 FMO1Q01740 532 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 LAMB3Q13751 1172 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 RCN2Q14257 317 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 COG2Q14746 738 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 QRICH1Q2TAL8 776 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 KHDC1Q4VXA5 237 aaKnown RBP10.28□□□□□ -0.76
SYNE1-230ENST00000495090 ZC2HC1CQ53FD0 456 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-230ENST00000495090 DPP8Q6V1X1 898 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-230ENST00000495090 LRRC74BQ6ZQY2 392 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 NOP9Q86U38 636 aaKnown RBP10.28□□□□□ -0.76
SYNE1-230ENST00000495090 ARHGEF19Q8IW93 802 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 FAM178BQ8IXR5 827 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 PPFIBP2Q8ND30 876 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 SCG3Q8WXD2 468 aaKnown RBP10.28□□□□□ -0.76
SYNE1-230ENST00000495090 NCSTNQ92542 709 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 PTPRN2Q92932 1015 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 AZIN2Q96A70 460 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 MIPEPQ99797 713 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 HSD17B14Q9BPX1 270 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 CADM1Q9BY67 442 aaKnown RBP10.28□□□□□ -0.76
SYNE1-230ENST00000495090 SYNCQ9H7C4 482 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 KIAA1586Q9HCI6 787 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 SLCO1B3Q9NPD5 702 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 DMAP1Q9NPF5 467 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-230ENST00000495090 DDX43Q9NXZ2 648 aaKnown RBP10.28□□□□□ -0.76
SYNE1-230ENST00000495090 LARSQ9P2J5 1176 aaKnown RBP10.28□□□□□ -0.76
SYNE1-230ENST00000495090 FETUBQ9UGM5 382 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 SLC24A2Q9UI40 661 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 PCDHA1Q9Y5I3 950 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.28□□□□□ -0.76
SYNE1-230ENST00000495090 SLC4A7Q9Y6M7 1214 aa10.28□□□□□ -0.76
SYNE1-230ENST00000495090 EMSYQ7Z589 1322 aa10.27□□□□□ -0.76
SYNE1-230ENST00000495090 EIF4E1BA6NMX2 242 aaKnown RBP10.27□□□□□ -0.76
SYNE1-230ENST00000495090 FAM86B1E9PN63 330 aa10.27□□□□□ -0.76
SYNE1-230ENST00000495090 MSH4O15457 936 aa10.27□□□□□ -0.76
SYNE1-230ENST00000495090 ATP9AO75110 1047 aa10.27□□□□□ -0.76
SYNE1-230ENST00000495090 UPP2O95045 317 aa10.27□□□□□ -0.76
SYNE1-230ENST00000495090 SGPL1O95470 568 aa10.27□□□□□ -0.76
SYNE1-230ENST00000495090 CYP3A4P08684 503 aa10.27□□□□□ -0.76
SYNE1-230ENST00000495090 FAM86B2P0C5J1 330 aa10.27□□□□□ -0.76
SYNE1-230ENST00000495090 RRM1P23921 792 aa10.27□□□□□ -0.76
SYNE1-230ENST00000495090 CACNA2D1P54289 1103 aa10.27□□□□□ -0.76
SYNE1-230ENST00000495090 KLF1Q13351 362 aaPredicted RBP10.27□□□□□ -0.76
SYNE1-230ENST00000495090 SNX1Q13596 522 aa10.27□□□□□ -0.76
SYNE1-230ENST00000495090 ALCAMQ13740 583 aa10.27□□□□□ -0.76
SYNE1-230ENST00000495090 RASA3Q14644 834 aa10.27□□□□□ -0.76
SYNE1-230ENST00000495090 TNIP1Q15025 636 aa10.27□□□□□ -0.76
SYNE1-230ENST00000495090 RCN1Q15293 331 aa10.27□□□□□ -0.76
SYNE1-230ENST00000495090 CCDC142Q17RM4 750 aa10.27□□□□□ -0.76
SYNE1-230ENST00000495090 RNF220Q5VTB9 566 aa10.27□□□□□ -0.76
SYNE1-230ENST00000495090 IZUMO3Q5VZ72 239 aa10.27□□□□□ -0.76
SYNE1-230ENST00000495090 FAM91A1Q658Y4 838 aa10.27□□□□□ -0.76
SYNE1-230ENST00000495090 ZNF746Q6NUN9 644 aaPredicted RBP10.27□□□□□ -0.76
SYNE1-230ENST00000495090 ZNF365Q70YC5 407 aa10.27□□□□□ -0.76
SYNE1-230ENST00000495090 OTOAQ7RTW8 1153 aa10.27□□□□□ -0.76
SYNE1-230ENST00000495090 ARHGAP22Q7Z5H3 698 aa10.27□□□□□ -0.76
SYNE1-230ENST00000495090 UCMAQ8WVF2 138 aa10.27□□□□□ -0.76
SYNE1-230ENST00000495090 SHC3Q92529 594 aa10.27□□□□□ -0.76
SYNE1-230ENST00000495090 SPOCK2Q92563 424 aa10.27□□□□□ -0.76
SYNE1-230ENST00000495090 PTCD3Q96EY7 689 aaKnown RBP10.27□□□□□ -0.76
SYNE1-230ENST00000495090 PAIP2Q9BPZ3 127 aaKnown RBP10.27□□□□□ -0.76
SYNE1-230ENST00000495090 AVENQ9NQS1 362 aaPredicted RBP10.27□□□□□ -0.76
SYNE1-230ENST00000495090 ANKFY1Q9P2R3 1169 aa10.27□□□□□ -0.76
SYNE1-230ENST00000495090 GRID1Q9ULK0 1009 aa10.27□□□□□ -0.76
SYNE1-230ENST00000495090 NFASCO94856 1347 aa10.27□□□□□ -0.77
SYNE1-230ENST00000495090 F5H6K3 240 aa10.27□□□□□ -0.77
SYNE1-230ENST00000495090 GSC2O15499 205 aa10.27□□□□□ -0.77
SYNE1-230ENST00000495090 ATMINO43313 823 aaPredicted RBP10.27□□□□□ -0.77
SYNE1-230ENST00000495090 PSMG1O95456 288 aa10.27□□□□□ -0.77
SYNE1-230ENST00000495090 MAPTP10636 758 aaKnown RBP10.27□□□□□ -0.77
SYNE1-230ENST00000495090 IL1R1P14778 569 aa10.27□□□□□ -0.77
SYNE1-230ENST00000495090 KCNA3P22001 575 aa10.27□□□□□ -0.77
SYNE1-230ENST00000495090 KLRC2P26717 231 aa10.27□□□□□ -0.77
SYNE1-230ENST00000495090 POLD1P28340 1107 aa10.27□□□□□ -0.77
SYNE1-230ENST00000495090 SLC16A2P36021 539 aa10.27□□□□□ -0.77
SYNE1-230ENST00000495090 VAMP7P51809 220 aa10.27□□□□□ -0.77
SYNE1-230ENST00000495090 CYP4A11Q02928 519 aa10.27□□□□□ -0.77
SYNE1-230ENST00000495090 KRT72Q14CN4 511 aa10.27□□□□□ -0.77
SYNE1-230ENST00000495090 SYDE2Q5VT97 1194 aa10.27□□□□□ -0.77
SYNE1-230ENST00000495090 DAB2IPQ5VWQ8 1189 aa10.27□□□□□ -0.77
SYNE1-230ENST00000495090 FOXB2Q5VYV0 432 aa10.27□□□□□ -0.77
SYNE1-230ENST00000495090 ACAD10Q6JQN1 1059 aa10.27□□□□□ -0.77
SYNE1-230ENST00000495090 SMC1BQ8NDV3 1235 aa10.27□□□□□ -0.77
SYNE1-230ENST00000495090 DCAF4Q8WV16 495 aa10.27□□□□□ -0.77
SYNE1-230ENST00000495090 NRG4Q8WWG1 115 aa10.27□□□□□ -0.77
SYNE1-230ENST00000495090 ZNF75CPQ92670 426 aaPredicted RBP10.27□□□□□ -0.77
SYNE1-230ENST00000495090 EZH1Q92800 747 aaPredicted RBP10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms