RNA–Protein interactions for RNA: ENST00000494323.5

PTCD3-219, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 540 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-219ENST00000494323 LRRTM3Q86VH5 581 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 LILRA2Q8N149 483 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 PRPF38AQ8NAV1 312 aaKnown RBP6.12□□□□□ -1.43
PTCD3-219ENST00000494323 USP38Q8NB14 1042 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 RCBTB1Q8NDN9 531 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 REPS2Q8NFH8 660 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.12□□□□□ -1.43
PTCD3-219ENST00000494323 NUP133Q8WUM0 1156 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 KIF1BPQ96EK5 621 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 TOX2Q96NM4 488 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 JMJD8Q96S16 334 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 SH2D4AQ9H788 454 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 RAVER2Q9HCJ3 691 aaKnown RBP6.12□□□□□ -1.43
PTCD3-219ENST00000494323 TYW1Q9NV66 732 aaKnown RBP6.12□□□□□ -1.43
PTCD3-219ENST00000494323 FAM53CQ9NYF3 392 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 CLIP2Q9UDT6 1046 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 NRBP1Q9UHY1 535 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 PLXNA1Q9UIW2 1896 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 ZHX1Q9UKY1 873 aaPredicted RBP6.12□□□□□ -1.43
PTCD3-219ENST00000494323 FAM184BQ9ULE4 1060 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 MAPRE3Q9UPY8 281 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 ATP8A1Q9Y2Q0 1164 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 TIMM13Q9Y5L4 95 aaPredicted RBP6.12□□□□□ -1.43
PTCD3-219ENST00000494323 TAF6LQ9Y6J9 622 aa6.12□□□□□ -1.43
PTCD3-219ENST00000494323 MCM3APO60318 1980 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 MYH8P13535 1937 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 SYNRGQ9UMZ2 1314 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 A0A1W2PQ27 194 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 A0A1W2PQ64 194 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 A0A1W2PQC6 194 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 A0A1W2PQD8 194 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 LRRC10BA6NIK2 292 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 ADCY6O43306 1168 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 NRDCO43847 1150 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 ASGR1P07306 291 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 CSF2RAP15509 400 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 ATP5JP18859 108 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 CDK7P50613 346 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 RPL11P62913 178 aaKnown RBP6.11□□□□□ -1.43
PTCD3-219ENST00000494323 ACVR2BQ13705 512 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 ZNF460Q14592 562 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 UBE3CQ15386 1083 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 PKN1Q16512 942 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 HSF5Q4G112 596 aaPredicted RBP6.11□□□□□ -1.43
PTCD3-219ENST00000494323 TMEM240Q5SV17 173 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 MBLAC2Q68D91 279 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 CCSAPQ6IQ19 270 aaPredicted RBP6.11□□□□□ -1.43
PTCD3-219ENST00000494323 MFSD5Q6N075 450 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 KCNT2Q6UVM3 1135 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 CCDC129Q6ZRS4 1044 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 ZNF365Q70YC5 407 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 NOL8Q76FK4 1167 aaKnown RBP6.11□□□□□ -1.43
PTCD3-219ENST00000494323 ANKRD33Q7Z3H0 272 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 RPAP2Q8IXW5 612 aaPredicted RBP6.11□□□□□ -1.43
PTCD3-219ENST00000494323 AMOTL1Q8IY63 956 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 ANKRD35Q8N283 1001 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 UBR7Q8N806 425 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 KLHDC9Q8NEP7 349 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 TIFAQ96CG3 184 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 KIRREL1Q96J84 757 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 MAGEB10Q96LZ2 347 aaPredicted RBP6.11□□□□□ -1.43
PTCD3-219ENST00000494323 SLC38A3Q99624 504 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 SLF1Q9BQI6 1058 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.11□□□□□ -1.434e-13■■■□□ 17
PTCD3-219ENST00000494323 IRF2BPLQ9H1B7 796 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 PRDM12Q9H4Q4 367 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 C19orf73Q9NVV2 129 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 RAPGEFL1Q9UHV5 662 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 CTDP1Q9Y5B0 961 aaPredicted RBP6.11□□□□□ -1.43
PTCD3-219ENST00000494323 CDH23Q9H251 3354 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 NAV1Q8NEY1 1877 aa6.11□□□□□ -1.43
PTCD3-219ENST00000494323 TCF20Q9UGU0 1960 aaKnown RBP6.1□□□□□ -1.43
PTCD3-219ENST00000494323 ZBED4O75132 1171 aa6.1□□□□□ -1.43
PTCD3-219ENST00000494323 DUSP11O75319 330 aaKnown RBP6.1□□□□□ -1.43
PTCD3-219ENST00000494323 PRDM1O75626 825 aa6.1□□□□□ -1.43
PTCD3-219ENST00000494323 LCP1P13796 627 aa6.1□□□□□ -1.43
PTCD3-219ENST00000494323 POU3F2P20265 443 aaPredicted RBP6.1□□□□□ -1.43
PTCD3-219ENST00000494323 PTGS1P23219 599 aa6.1□□□□□ -1.43
PTCD3-219ENST00000494323 CYP2C18P33260 490 aa6.1□□□□□ -1.43
PTCD3-219ENST00000494323 SOX5P35711 763 aa6.1□□□□□ -1.43
PTCD3-219ENST00000494323 BEX3Q00994 111 aa6.1□□□□□ -1.43
PTCD3-219ENST00000494323 CNTN2Q02246 1040 aa6.1□□□□□ -1.43
PTCD3-219ENST00000494323 LSAMPQ13449 338 aa6.1□□□□□ -1.43
PTCD3-219ENST00000494323 FZD5Q13467 585 aa6.1□□□□□ -1.43
PTCD3-219ENST00000494323 KIZQ2M2Z5 673 aa6.1□□□□□ -1.43
PTCD3-219ENST00000494323 MAMDC4Q6UXC1 1216 aa6.1□□□□□ -1.43
PTCD3-219ENST00000494323 MTDHQ86UE4 582 aaKnown RBP6.1□□□□□ -1.43
PTCD3-219ENST00000494323 DDX42Q86XP3 938 aaKnown RBP eCLIP6.1□□□□□ -1.43
PTCD3-219ENST00000494323 PCSK9Q8NBP7 692 aaKnown RBP6.1□□□□□ -1.43
PTCD3-219ENST00000494323 GLT1D1Q96MS3 346 aa6.1□□□□□ -1.43
PTCD3-219ENST00000494323 STRBPQ96SI9 672 aaKnown RBP6.1□□□□□ -1.43
PTCD3-219ENST00000494323 ALG1Q9BT22 464 aa6.1□□□□□ -1.43
PTCD3-219ENST00000494323 TEX13BQ9BXU2 312 aa6.1□□□□□ -1.43
PTCD3-219ENST00000494323 HOMER2Q9NSB8 354 aa6.1□□□□□ -1.43
PTCD3-219ENST00000494323 ACSL6Q9UKU0 697 aa6.1□□□□□ -1.43
PTCD3-219ENST00000494323 TBX21Q9UL17 535 aa6.1□□□□□ -1.43
PTCD3-219ENST00000494323 TRAF6Q9Y4K3 522 aa6.1□□□□□ -1.43
PTCD3-219ENST00000494323 PCDHA2Q9Y5H9 948 aa6.1□□□□□ -1.43
PTCD3-219ENST00000494323 TNPO3Q9Y5L0 923 aaKnown RBP6.1□□□□□ -1.43
PTCD3-219ENST00000494323 DDX49Q9Y6V7 483 aaKnown RBP6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms