RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 BACE2Q9Y5Z0 518 aa17.19■□□□□ 0.34
SMPD4-220ENST00000491319 ZFP37Q9Y6Q3 630 aaPredicted RBP17.19■□□□□ 0.34
SMPD4-220ENST00000491319 CACNA1IQ9P0X4 2223 aa17.19■□□□□ 0.34
SMPD4-220ENST00000491319 CFAP54Q96N23 3096 aa17.18■□□□□ 0.34
SMPD4-220ENST00000491319 RIF1Q5UIP0 2472 aaKnown RBP17.18■□□□□ 0.34
SMPD4-220ENST00000491319 PROB1E7EW31 1015 aa17.18■□□□□ 0.34
SMPD4-220ENST00000491319 STK25O00506 426 aa17.18■□□□□ 0.34
SMPD4-220ENST00000491319 TOM1L1O75674 476 aa17.18■□□□□ 0.34
SMPD4-220ENST00000491319 POU2F2P09086 479 aa17.18■□□□□ 0.34
SMPD4-220ENST00000491319 RFX1P22670 979 aa17.18■□□□□ 0.34
SMPD4-220ENST00000491319 NBL1P41271 181 aa17.18■□□□□ 0.34
SMPD4-220ENST00000491319 ROR1Q01973 937 aa17.18■□□□□ 0.34
SMPD4-220ENST00000491319 UVSSAQ2YD98 709 aa17.18■□□□□ 0.34
SMPD4-220ENST00000491319 VARS2Q5ST30 1063 aaKnown RBP17.18■□□□□ 0.34
SMPD4-220ENST00000491319 TMEM130Q8N3G9 435 aa17.18■□□□□ 0.34
SMPD4-220ENST00000491319 LRRC15Q8TF66 581 aa17.18■□□□□ 0.34
SMPD4-220ENST00000491319 ARHGEF3Q9NR81 526 aa17.18■□□□□ 0.34
SMPD4-220ENST00000491319 DNMT3BQ9UBC3 853 aaKnown RBP17.18■□□□□ 0.34
SMPD4-220ENST00000491319 SMC3Q9UQE7 1217 aa17.18■□□□□ 0.34
SMPD4-220ENST00000491319 PTPRZ1P23471 2315 aaPredicted RBP17.18■□□□□ 0.34
SMPD4-220ENST00000491319 WDR27A2RRH5 827 aa17.17■□□□□ 0.34
SMPD4-220ENST00000491319 CXCL8P10145 99 aa17.17■□□□□ 0.34
SMPD4-220ENST00000491319 SCN1AP35498 2009 aa17.17■□□□□ 0.34
SMPD4-220ENST00000491319 SMTNP53814 917 aa17.17■□□□□ 0.34
SMPD4-220ENST00000491319 SLC10A6Q3KNW5 377 aa17.17■□□□□ 0.34
SMPD4-220ENST00000491319 PABPC1LQ4VXU2 614 aaKnown RBP17.17■□□□□ 0.34
SMPD4-220ENST00000491319 ARSHQ5FYA8 562 aa17.17■□□□□ 0.34
SMPD4-220ENST00000491319 SLC8B1Q6J4K2 584 aa17.17■□□□□ 0.34
SMPD4-220ENST00000491319 ASCL5Q7RTU5 278 aa17.17■□□□□ 0.34
SMPD4-220ENST00000491319 KCTD17Q8N5Z5 321 aa17.17■□□□□ 0.34
SMPD4-220ENST00000491319 DTWD2Q8NBA8 298 aa17.17■□□□□ 0.34
SMPD4-220ENST00000491319 ING5Q8WYH8 240 aa17.17■□□□□ 0.34
SMPD4-220ENST00000491319 HAPLN2Q9GZV7 340 aa17.17■□□□□ 0.34
SMPD4-220ENST00000491319 SLC2A4RGQ9NR83 387 aa17.17■□□□□ 0.34
SMPD4-220ENST00000491319 KCND2Q9NZV8 630 aa17.17■□□□□ 0.34
SMPD4-220ENST00000491319 TUBGCP4Q9UGJ1 667 aa17.17■□□□□ 0.34
SMPD4-220ENST00000491319 NUB1Q9Y5A7 615 aa17.17■□□□□ 0.34
SMPD4-220ENST00000491319 TICRRQ7Z2Z1 1910 aa17.16■□□□□ 0.34
SMPD4-220ENST00000491319 SYN3O14994 580 aa17.16■□□□□ 0.34
SMPD4-220ENST00000491319 RPL9P32969 192 aaKnown RBP17.16■□□□□ 0.34
SMPD4-220ENST00000491319 MCM4P33991 863 aa17.16■□□□□ 0.34
SMPD4-220ENST00000491319 NCKAP1LP55160 1127 aa17.16■□□□□ 0.34
SMPD4-220ENST00000491319 ARPP19P56211 112 aa17.16■□□□□ 0.34
SMPD4-220ENST00000491319 MCL1Q07820 350 aa17.16■□□□□ 0.34
SMPD4-220ENST00000491319 ANGPT1Q15389 498 aa17.16■□□□□ 0.34
SMPD4-220ENST00000491319 SLC5A9Q2M3M2 681 aa17.16■□□□□ 0.34
SMPD4-220ENST00000491319 ZPBP2Q6X784 338 aa17.16■□□□□ 0.34
SMPD4-220ENST00000491319 FRMD5Q7Z6J6 570 aa17.16■□□□□ 0.34
SMPD4-220ENST00000491319 NPAS3Q8IXF0 933 aa17.16■□□□□ 0.34
SMPD4-220ENST00000491319 BICD1Q96G01 975 aa17.16■□□□□ 0.34
SMPD4-220ENST00000491319 REEP2Q9BRK0 252 aa17.16■□□□□ 0.34
SMPD4-220ENST00000491319 UPF2Q9HAU5 1272 aaKnown RBP17.16■□□□□ 0.34
SMPD4-220ENST00000491319 PRR23AA6NEV1 266 aa17.15■□□□□ 0.34
SMPD4-220ENST00000491319 CLDN3O15551 220 aa17.15■□□□□ 0.34
SMPD4-220ENST00000491319 TBC1D4O60343 1298 aa17.15■□□□□ 0.34
SMPD4-220ENST00000491319 ABLIM3O94929 683 aa17.15■□□□□ 0.34
SMPD4-220ENST00000491319 MATR3P43243 847 aaKnown RBP eCLIP17.15■□□□□ 0.34
SMPD4-220ENST00000491319 GPC5P78333 572 aa17.15■□□□□ 0.34
SMPD4-220ENST00000491319 GRIN1Q05586 938 aa17.15■□□□□ 0.34
SMPD4-220ENST00000491319 SPAG1Q07617 926 aa17.15■□□□□ 0.34
SMPD4-220ENST00000491319 DHX8Q14562 1220 aaKnown RBP17.15■□□□□ 0.34
SMPD4-220ENST00000491319 LARP1BQ659C4 914 aaKnown RBP17.15■□□□□ 0.34
SMPD4-220ENST00000491319 MTSS1LQ765P7 747 aa17.15■□□□□ 0.34
SMPD4-220ENST00000491319 RTL10Q7L3V2 364 aa17.15■□□□□ 0.34
SMPD4-220ENST00000491319 GPBP1Q86WP2 473 aa17.15■□□□□ 0.34
SMPD4-220ENST00000491319 ZNF461Q8TAF7 563 aa17.15■□□□□ 0.34
SMPD4-220ENST00000491319 SUSD3Q96L08 255 aa17.15■□□□□ 0.34
SMPD4-220ENST00000491319 AK8Q96MA6 479 aa17.15■□□□□ 0.34
SMPD4-220ENST00000491319 KXD1Q9BQD3 176 aa17.15■□□□□ 0.34
SMPD4-220ENST00000491319 BLOC1S4Q9NUP1 217 aa17.15■□□□□ 0.34
SMPD4-220ENST00000491319 LARSQ9P2J5 1176 aaKnown RBP17.15■□□□□ 0.34
SMPD4-220ENST00000491319 KCNG1Q9UIX4 513 aa17.15■□□□□ 0.34
SMPD4-220ENST00000491319 COL4A2P08572 1712 aa17.15■□□□□ 0.34
SMPD4-220ENST00000491319 ARHGEF37A1IGU5 675 aa17.14■□□□□ 0.33
SMPD4-220ENST00000491319 PRRG1O14668 218 aa17.14■□□□□ 0.33
SMPD4-220ENST00000491319 LRG1P02750 347 aa17.14■□□□□ 0.33
SMPD4-220ENST00000491319 DCNP07585 359 aaKnown RBP17.14■□□□□ 0.33
SMPD4-220ENST00000491319 RHOP08100 348 aa17.14■□□□□ 0.33
SMPD4-220ENST00000491319 TNFSF9P41273 254 aa17.14■□□□□ 0.33
SMPD4-220ENST00000491319 MCM2P49736 904 aa17.14■□□□□ 0.33
SMPD4-220ENST00000491319 MRPL58Q14197 206 aaKnown RBP17.14■□□□□ 0.33
SMPD4-220ENST00000491319 SPECC1Q5M775 1068 aa17.14■□□□□ 0.33
SMPD4-220ENST00000491319 PHLDB3Q6NSJ2 640 aa17.14■□□□□ 0.33
SMPD4-220ENST00000491319 HAUS6Q7Z4H7 955 aa17.14■□□□□ 0.33
SMPD4-220ENST00000491319 CALML4Q96GE6 196 aa17.14■□□□□ 0.33
SMPD4-220ENST00000491319 TBC1D32Q96NH3 1257 aa17.14■□□□□ 0.33
SMPD4-220ENST00000491319 FOXQ1Q9C009 403 aa17.14■□□□□ 0.33
SMPD4-220ENST00000491319 FBXL5Q9UKA1 691 aa17.14■□□□□ 0.33
SMPD4-220ENST00000491319 KCNH3Q9ULD8 1083 aa17.14■□□□□ 0.33
SMPD4-220ENST00000491319 ODF2LQ9ULJ1 636 aa17.14■□□□□ 0.33
SMPD4-220ENST00000491319 MRPS23Q9Y3D9 190 aaKnown RBP17.14■□□□□ 0.33
SMPD4-220ENST00000491319 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.14■□□□□ 0.33
SMPD4-220ENST00000491319 DMDP11532 3685 aa17.14■□□□□ 0.33
SMPD4-220ENST00000491319 TTC26A0AVF1 554 aa17.13■□□□□ 0.33
SMPD4-220ENST00000491319 H0YCG3 227 aa17.13■□□□□ 0.33
SMPD4-220ENST00000491319 H7C4K7 107 aa17.13■□□□□ 0.33
SMPD4-220ENST00000491319 K7ENM7 598 aa17.13■□□□□ 0.33
SMPD4-220ENST00000491319 HNRNPDLO14979 420 aaKnown RBP17.13■□□□□ 0.33
SMPD4-220ENST00000491319 SLC26A4O43511 780 aa17.13■□□□□ 0.33
SMPD4-220ENST00000491319 SEC24AO95486 1093 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms