RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 WASP42768 502 aa4.28□□□□□ -1.72
CPSF3-205ENST00000489629 HSD11B2P80365 405 aa4.28□□□□□ -1.72
CPSF3-205ENST00000489629 MRPS21P82921 87 aaKnown RBP4.28□□□□□ -1.72
CPSF3-205ENST00000489629 ZNF169Q14929 603 aaPredicted RBP4.28□□□□□ -1.72
CPSF3-205ENST00000489629 ZNF362Q5T0B9 420 aaPredicted RBP4.28□□□□□ -1.72
CPSF3-205ENST00000489629 RNF219Q5W0B1 726 aaPredicted RBP4.28□□□□□ -1.72
CPSF3-205ENST00000489629 FBXO42Q6P3S6 717 aa4.28□□□□□ -1.72
CPSF3-205ENST00000489629 Q6ZNX1 250 aa4.28□□□□□ -1.72
CPSF3-205ENST00000489629 UBE3BQ7Z3V4 1068 aa4.28□□□□□ -1.72
CPSF3-205ENST00000489629 SLC44A3Q8N4M1 653 aa4.28□□□□□ -1.72
CPSF3-205ENST00000489629 Q8NA96 180 aa4.28□□□□□ -1.72
CPSF3-205ENST00000489629 CCHCR1Q8TD31 782 aa4.28□□□□□ -1.72
CPSF3-205ENST00000489629 RNF31Q96EP0 1072 aa4.28□□□□□ -1.72
CPSF3-205ENST00000489629 UNKLQ9H9P5 680 aaKnown RBP4.28□□□□□ -1.72
CPSF3-205ENST00000489629 FOXJ2Q9P0K8 574 aa4.28□□□□□ -1.72
CPSF3-205ENST00000489629 HSFX1Q9UBD0 423 aa4.28□□□□□ -1.72
CPSF3-205ENST00000489629 USP25Q9UHP3 1055 aa4.28□□□□□ -1.72
CPSF3-205ENST00000489629 ZBTB21Q9ULJ3 1066 aa4.28□□□□□ -1.72
CPSF3-205ENST00000489629 TRIM75PA6NK02 468 aa4.27□□□□□ -1.73
CPSF3-205ENST00000489629 CD38P28907 300 aa4.27□□□□□ -1.73
CPSF3-205ENST00000489629 VAV2P52735 878 aa4.27□□□□□ -1.73
CPSF3-205ENST00000489629 NOMO3P69849 1222 aa4.27□□□□□ -1.73
CPSF3-205ENST00000489629 SIM1P81133 766 aaPredicted RBP4.27□□□□□ -1.73
CPSF3-205ENST00000489629 SLFN5Q08AF3 891 aa4.27□□□□□ -1.73
CPSF3-205ENST00000489629 ERCC6LQ2NKX8 1250 aa4.27□□□□□ -1.73
CPSF3-205ENST00000489629 NOMO2Q5JPE7 1267 aa4.27□□□□□ -1.73
CPSF3-205ENST00000489629 NUP133Q8WUM0 1156 aa4.27□□□□□ -1.73
CPSF3-205ENST00000489629 MARS2Q96GW9 593 aaKnown RBP4.27□□□□□ -1.73
CPSF3-205ENST00000489629 SLC2A13Q96QE2 648 aa4.27□□□□□ -1.73
CPSF3-205ENST00000489629 MANSC1Q9H8J5 431 aa4.27□□□□□ -1.73
CPSF3-205ENST00000489629 TESQ9UGI8 421 aaKnown RBP4.27□□□□□ -1.73
CPSF3-205ENST00000489629 DNM3Q9UQ16 869 aa4.27□□□□□ -1.73
CPSF3-205ENST00000489629 MYBBP1AQ9BQG0 1328 aaKnown RBP4.26□□□□□ -1.73
CPSF3-205ENST00000489629 TCRBV7S2A1N4TA0A589 114 aa4.26□□□□□ -1.73
CPSF3-205ENST00000489629 MYADML2A6NDP7 307 aa4.26□□□□□ -1.73
CPSF3-205ENST00000489629 MGST3O14880 152 aa4.26□□□□□ -1.73
CPSF3-205ENST00000489629 ALAS1P13196 640 aa4.26□□□□□ -1.73
CPSF3-205ENST00000489629 ZNF37AP17032 561 aaPredicted RBP4.26□□□□□ -1.73
CPSF3-205ENST00000489629 DDCP20711 480 aa4.26□□□□□ -1.73
CPSF3-205ENST00000489629 RARRES1P49788 294 aa4.26□□□□□ -1.73
CPSF3-205ENST00000489629 HNRNPA0Q13151 305 aaKnown RBP4.26□□□□□ -1.73
CPSF3-205ENST00000489629 KLF1Q13351 362 aaPredicted RBP4.26□□□□□ -1.73
CPSF3-205ENST00000489629 INAVAQ3KP66 663 aa4.26□□□□□ -1.73
CPSF3-205ENST00000489629 DACT2Q5SW24 774 aa4.26□□□□□ -1.73
CPSF3-205ENST00000489629 LNX2Q8N448 690 aa4.26□□□□□ -1.73
CPSF3-205ENST00000489629 FITM2Q8N6M3 262 aa4.26□□□□□ -1.73
CPSF3-205ENST00000489629 DCBLD1Q8N8Z6 715 aa4.26□□□□□ -1.73
CPSF3-205ENST00000489629 BOLLQ8N9W6 283 aaKnown RBP4.26□□□□□ -1.73
CPSF3-205ENST00000489629 CAGE1Q8TC20 777 aa4.26□□□□□ -1.73
CPSF3-205ENST00000489629 NRG4Q8WWG1 115 aa4.26□□□□□ -1.73
CPSF3-205ENST00000489629 DPF2Q92785 391 aa4.26□□□□□ -1.73
CPSF3-205ENST00000489629 PDLIM2Q96JY6 352 aa4.26□□□□□ -1.73
CPSF3-205ENST00000489629 LRFN3Q9BTN0 628 aa4.26□□□□□ -1.73
CPSF3-205ENST00000489629 GSTO2Q9H4Y5 243 aa4.26□□□□□ -1.73
CPSF3-205ENST00000489629 TBCCD1Q9NVR7 557 aa4.26□□□□□ -1.73
CPSF3-205ENST00000489629 TLK1Q9UKI8 766 aa4.26□□□□□ -1.73
CPSF3-205ENST00000489629 RUVBL1Q9Y265 456 aaKnown RBP4.26□□□□□ -1.73
CPSF3-205ENST00000489629 SPATA31A6Q5VVP1 1343 aa4.25□□□□□ -1.73
CPSF3-205ENST00000489629 WASHC2AQ641Q2 1341 aa4.25□□□□□ -1.73
CPSF3-205ENST00000489629 ERN1O75460 977 aaKnown RBP4.25□□□□□ -1.73
CPSF3-205ENST00000489629 C1QL1O75973 258 aa4.25□□□□□ -1.73
CPSF3-205ENST00000489629 CNGA1P29973 690 aa4.25□□□□□ -1.73
CPSF3-205ENST00000489629 SLC6A4P31645 630 aa4.25□□□□□ -1.73
CPSF3-205ENST00000489629 ELLP55199 621 aaPredicted RBP4.25□□□□□ -1.73
CPSF3-205ENST00000489629 CTXN1P60606 82 aa4.25□□□□□ -1.73
CPSF3-205ENST00000489629 EGFLAMQ63HQ2 1017 aa4.25□□□□□ -1.73
CPSF3-205ENST00000489629 FOXR2Q6PJQ5 311 aa4.25□□□□□ -1.73
CPSF3-205ENST00000489629 CBARPQ8N350 705 aaPredicted RBP4.25□□□□□ -1.73
CPSF3-205ENST00000489629 MED15Q96RN5 788 aa4.25□□□□□ -1.73
CPSF3-205ENST00000489629 PNKPQ96T60 521 aa4.25□□□□□ -1.73
CPSF3-205ENST00000489629 CASS4Q9NQ75 786 aa4.25□□□□□ -1.73
CPSF3-205ENST00000489629 ADARB2Q9NS39 739 aaKnown RBP4.25□□□□□ -1.73
CPSF3-205ENST00000489629 KCTD5Q9NXV2 234 aa4.25□□□□□ -1.73
CPSF3-205ENST00000489629 PRKAB1Q9Y478 270 aa4.25□□□□□ -1.73
CPSF3-205ENST00000489629 CDHR4A6H8M9 788 aa4.24□□□□□ -1.73
CPSF3-205ENST00000489629 CLSTN1O94985 981 aa4.24□□□□□ -1.73
CPSF3-205ENST00000489629 IGLV2-14P01704 120 aa4.24□□□□□ -1.73
CPSF3-205ENST00000489629 FCER1AP12319 257 aa4.24□□□□□ -1.73
CPSF3-205ENST00000489629 TARDBPQ13148 414 aaKnown RBP eCLIP4.24□□□□□ -1.73
CPSF3-205ENST00000489629 GEN1Q17RS7 908 aa4.24□□□□□ -1.73
CPSF3-205ENST00000489629 ATL2Q8NHH9 583 aa4.24□□□□□ -1.73
CPSF3-205ENST00000489629 SSH1Q8WYL5 1049 aa4.24□□□□□ -1.73
CPSF3-205ENST00000489629 C7orf25Q9BPX7 421 aa4.24□□□□□ -1.73
CPSF3-205ENST00000489629 AIFM2Q9BRQ8 373 aa4.24□□□□□ -1.73
CPSF3-205ENST00000489629 DUSP26Q9BV47 211 aa4.24□□□□□ -1.73
CPSF3-205ENST00000489629 SEMA4GQ9NTN9 838 aa4.24□□□□□ -1.73
CPSF3-205ENST00000489629 VSX1Q9NZR4 365 aaPredicted RBP4.24□□□□□ -1.73
CPSF3-205ENST00000489629 TUBD1Q9UJT1 453 aa4.24□□□□□ -1.73
CPSF3-205ENST00000489629 INTUQ9ULD6 942 aa4.24□□□□□ -1.73
CPSF3-205ENST00000489629 MTO1Q9Y2Z2 717 aaKnown RBP4.24□□□□□ -1.73
CPSF3-205ENST00000489629 KIAA0391O15091 583 aaKnown RBP4.23□□□□□ -1.73
CPSF3-205ENST00000489629 MATN4O95460 622 aa4.23□□□□□ -1.73
CPSF3-205ENST00000489629 CACNA2D1P54289 1103 aa4.23□□□□□ -1.73
CPSF3-205ENST00000489629 MRPS35P82673 323 aaKnown RBP4.23□□□□□ -1.73
CPSF3-205ENST00000489629 NHLH1Q02575 133 aa4.23□□□□□ -1.73
CPSF3-205ENST00000489629 KIAA0895LQ68EN5 471 aa4.23□□□□□ -1.73
CPSF3-205ENST00000489629 SP5Q6BEB4 398 aaPredicted RBP4.23□□□□□ -1.73
CPSF3-205ENST00000489629 DDX42Q86XP3 938 aaKnown RBP eCLIP4.23□□□□□ -1.73
CPSF3-205ENST00000489629 RHOT1Q8IXI2 618 aa4.23□□□□□ -1.73
CPSF3-205ENST00000489629 CNTD1Q8N815 330 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms