RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 RANBP17Q9H2T7 1088 aaKnown RBP18.53■□□□□ 0.56
NPHP4-209ENST00000489180 FLT1P17948 1338 aa18.53■□□□□ 0.56
NPHP4-209ENST00000489180 PNKPQ96T60 521 aa18.53■□□□□ 0.56
NPHP4-209ENST00000489180 PDS5AQ29RF7 1337 aaKnown RBP18.53■□□□□ 0.56
NPHP4-209ENST00000489180 ARMC2Q8NEN0 867 aa18.53■□□□□ 0.56
NPHP4-209ENST00000489180 EML4Q9HC35 981 aaKnown RBP18.53■□□□□ 0.56
NPHP4-209ENST00000489180 ENO4A6NNW6 628 aa18.53■□□□□ 0.56
NPHP4-209ENST00000489180 GNAT1P11488 350 aa18.53■□□□□ 0.56
NPHP4-209ENST00000489180 PDGFRAP16234 1089 aa18.53■□□□□ 0.56
NPHP4-209ENST00000489180 PTK7Q13308 1070 aa18.53■□□□□ 0.56
NPHP4-209ENST00000489180 RBBP8NLQ8NC74 664 aaPredicted RBP18.53■□□□□ 0.56
NPHP4-209ENST00000489180 THTPAQ9BU02 230 aa18.53■□□□□ 0.56
NPHP4-209ENST00000489180 AGAP1Q9UPQ3 857 aa18.53■□□□□ 0.56
NPHP4-209ENST00000489180 KCNQ2O43526 872 aa18.52■□□□□ 0.56
NPHP4-209ENST00000489180 HLA-DPA1P20036 260 aa18.52■□□□□ 0.56
NPHP4-209ENST00000489180 TPI1P60174 286 aa18.52■□□□□ 0.56
NPHP4-209ENST00000489180 ARHGAP18Q8N392 663 aa18.52■□□□□ 0.56
NPHP4-209ENST00000489180 PLEKHA5Q9HAU0 1116 aa18.52■□□□□ 0.56
NPHP4-209ENST00000489180 AIPL1Q9NZN9 384 aa18.52■□□□□ 0.56
NPHP4-209ENST00000489180 MYO3BQ8WXR4 1341 aa18.52■□□□□ 0.56
NPHP4-209ENST00000489180 PPP4R4Q6NUP7 873 aa18.52■□□□□ 0.56
NPHP4-209ENST00000489180 NYAP1Q6ZVC0 841 aa18.52■□□□□ 0.56
NPHP4-209ENST00000489180 TCN1P20061 433 aaPredicted RBP18.52■□□□□ 0.56
NPHP4-209ENST00000489180 AP3M2P53677 418 aa18.52■□□□□ 0.56
NPHP4-209ENST00000489180 BTBD8Q5XKL5 378 aa18.52■□□□□ 0.56
NPHP4-209ENST00000489180 PLA2G4FQ68DD2 849 aa18.52■□□□□ 0.56
NPHP4-209ENST00000489180 TMEM154Q6P9G4 183 aa18.52■□□□□ 0.56
NPHP4-209ENST00000489180 ASPSCR1Q9BZE9 553 aa18.52■□□□□ 0.56
NPHP4-209ENST00000489180 LZTS1Q9Y250 596 aa18.52■□□□□ 0.56
NPHP4-209ENST00000489180 ZNF200P98182 395 aaPredicted RBP18.52■□□□□ 0.55
NPHP4-209ENST00000489180 MAPRE2Q15555 327 aa18.52■□□□□ 0.55
NPHP4-209ENST00000489180 SMTNL2Q2TAL5 461 aa18.52■□□□□ 0.55
NPHP4-209ENST00000489180 TSPOAP1O95153 1857 aa18.52■□□□□ 0.55
NPHP4-209ENST00000489180 GTPBP10A4D1E9 387 aaKnown RBP18.51■□□□□ 0.55
NPHP4-209ENST00000489180 GFAPP14136 432 aa18.51■□□□□ 0.55
NPHP4-209ENST00000489180 CCDC85BQ15834 202 aaPredicted RBP18.51■□□□□ 0.55
NPHP4-209ENST00000489180 ACCSLQ4AC99 568 aa18.51■□□□□ 0.55
NPHP4-209ENST00000489180 ZC3H12BQ5HYM0 836 aaKnown RBP18.51■□□□□ 0.55
NPHP4-209ENST00000489180 NIPSNAP3AQ9UFN0 247 aaPredicted RBP18.51■□□□□ 0.55
NPHP4-209ENST00000489180 ARHGAP26Q9UNA1 814 aa18.51■□□□□ 0.55
NPHP4-209ENST00000489180 ZSCAN9O15535 394 aaPredicted RBP18.51■□□□□ 0.55
NPHP4-209ENST00000489180 KRT4P19013 534 aa18.51■□□□□ 0.55
NPHP4-209ENST00000489180 RXRBP28702 533 aa18.51■□□□□ 0.55
NPHP4-209ENST00000489180 LVRNQ6Q4G3 990 aa18.51■□□□□ 0.55
NPHP4-209ENST00000489180 AGGF1Q8N302 714 aaeCLIP18.51■□□□□ 0.55
NPHP4-209ENST00000489180 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.51■□□□□ 0.551e-11■■■■■ 94.4
NPHP4-209ENST00000489180 OTUD5Q96G74 571 aa18.51■□□□□ 0.55
NPHP4-209ENST00000489180 CRB1P82279 1406 aa18.51■□□□□ 0.55
NPHP4-209ENST00000489180 KCNA3P22001 575 aa18.51■□□□□ 0.55
NPHP4-209ENST00000489180 IFNA8P32881 189 aa18.51■□□□□ 0.55
NPHP4-209ENST00000489180 MAGEA4P43358 317 aa18.51■□□□□ 0.55
NPHP4-209ENST00000489180 REXO1L1PQ8IX06 675 aa18.51■□□□□ 0.55
NPHP4-209ENST00000489180 PPHLN1Q8NEY8 458 aaKnown RBP18.51■□□□□ 0.55
NPHP4-209ENST00000489180 ASIC4Q96FT7 647 aa18.51■□□□□ 0.55
NPHP4-209ENST00000489180 PI4K2AQ9BTU6 479 aa18.51■□□□□ 0.55
NPHP4-209ENST00000489180 DAGLAQ9Y4D2 1042 aa18.51■□□□□ 0.55
NPHP4-209ENST00000489180 ANGPT2O15123 496 aa18.51■□□□□ 0.55
NPHP4-209ENST00000489180 SYF2O95926 243 aaKnown RBP18.51■□□□□ 0.55
NPHP4-209ENST00000489180 CPA2P48052 419 aa18.51■□□□□ 0.55
NPHP4-209ENST00000489180 NCOA4Q13772 614 aa18.51■□□□□ 0.55
NPHP4-209ENST00000489180 BARGINQ6ZT62 677 aa18.51■□□□□ 0.55
NPHP4-209ENST00000489180 ARHGEF26Q96DR7 871 aa18.51■□□□□ 0.55
NPHP4-209ENST00000489180 ZCWPW1Q9H0M4 648 aa18.51■□□□□ 0.55
NPHP4-209ENST00000489180 ISCUQ9H1K1 167 aa18.51■□□□□ 0.55
NPHP4-209ENST00000489180 IGF2BP3O00425 579 aaKnown RBP eCLIP18.51■□□□□ 0.55
NPHP4-209ENST00000489180 MTMR2Q13614 643 aa18.51■□□□□ 0.55
NPHP4-209ENST00000489180 PTGISQ16647 500 aa18.51■□□□□ 0.55
NPHP4-209ENST00000489180 GALNT4Q8N4A0 578 aa18.51■□□□□ 0.55
NPHP4-209ENST00000489180 ACSF2Q96CM8 615 aaPredicted RBP18.51■□□□□ 0.55
NPHP4-209ENST00000489180 STAMBPL1Q96FJ0 436 aa18.51■□□□□ 0.55
NPHP4-209ENST00000489180 SLC40A1Q9NP59 571 aa18.51■□□□□ 0.55
NPHP4-209ENST00000489180 PIM2Q9P1W9 311 aa18.51■□□□□ 0.55
NPHP4-209ENST00000489180 ALG6Q9Y672 507 aa18.51■□□□□ 0.55
NPHP4-209ENST00000489180 A0A1W2PQJ5 194 aa18.5■□□□□ 0.55
NPHP4-209ENST00000489180 UBE2Q2LH0YL09 131 aa18.5■□□□□ 0.55
NPHP4-209ENST00000489180 AKAP10O43572 662 aa18.5■□□□□ 0.55
NPHP4-209ENST00000489180 STAT5BP51692 787 aa18.5■□□□□ 0.55
NPHP4-209ENST00000489180 HMGCS2P54868 508 aa18.5■□□□□ 0.55
NPHP4-209ENST00000489180 HDAC4P56524 1084 aa18.5■□□□□ 0.55
NPHP4-209ENST00000489180 SLC29A2Q14542 456 aa18.5■□□□□ 0.55
NPHP4-209ENST00000489180 C3orf62Q6ZUJ4 267 aa18.5■□□□□ 0.55
NPHP4-209ENST00000489180 TAGAPQ8N103 731 aa18.5■□□□□ 0.55
NPHP4-209ENST00000489180 ELMO2Q96JJ3 720 aa18.5■□□□□ 0.55
NPHP4-209ENST00000489180 QRICH2Q9H0J4 1663 aa18.5■□□□□ 0.55
NPHP4-209ENST00000489180 AIM2O14862 343 aa18.5■□□□□ 0.55
NPHP4-209ENST00000489180 VCPP55072 806 aaKnown RBP18.5■□□□□ 0.55
NPHP4-209ENST00000489180 ZNF235Q14590 738 aa18.5■□□□□ 0.55
NPHP4-209ENST00000489180 RUBCNLQ9H714 662 aa18.5■□□□□ 0.55
NPHP4-209ENST00000489180 MAD2L2Q9UI95 211 aa18.5■□□□□ 0.55
NPHP4-209ENST00000489180 SNX9Q9Y5X1 595 aa18.5■□□□□ 0.55
NPHP4-209ENST00000489180 DGKIO75912 1065 aa18.5■□□□□ 0.55
NPHP4-209ENST00000489180 MED21Q13503 144 aa18.5■□□□□ 0.55
NPHP4-209ENST00000489180 CNTNAP5Q8WYK1 1306 aa18.5■□□□□ 0.55
NPHP4-209ENST00000489180 HNRNPCP07910 306 aaKnown RBP eCLIP18.5■□□□□ 0.55
NPHP4-209ENST00000489180 UBTFL6P0CB48 400 aaPredicted RBP18.5■□□□□ 0.55
NPHP4-209ENST00000489180 ERVK-24P63145 666 aa18.5■□□□□ 0.55
NPHP4-209ENST00000489180 HPS5Q9UPZ3 1129 aa18.5■□□□□ 0.55
NPHP4-209ENST00000489180 PLEKHG2Q9H7P9 1386 aa18.49■□□□□ 0.55
NPHP4-209ENST00000489180 TMCC1O94876 653 aa18.49■□□□□ 0.55
NPHP4-209ENST00000489180 WEE2P0C1S8 567 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms