RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 KCNE1P15382 129 aa11.16□□□□□ -0.62
SKA1-204ENST00000488454 CD46P15529 392 aa11.16□□□□□ -0.62
SKA1-204ENST00000488454 CASP4P49662 377 aa11.16□□□□□ -0.62
SKA1-204ENST00000488454 GATMP50440 423 aa11.16□□□□□ -0.62
SKA1-204ENST00000488454 SCNN1GP51170 649 aa11.16□□□□□ -0.62
SKA1-204ENST00000488454 GRIK3Q13003 919 aa11.16□□□□□ -0.62
SKA1-204ENST00000488454 CCDC40Q4G0X9 1142 aa11.16□□□□□ -0.62
SKA1-204ENST00000488454 ANO6Q4KMQ2 910 aa11.16□□□□□ -0.62
SKA1-204ENST00000488454 SPATA1Q5VX52 437 aa11.16□□□□□ -0.62
SKA1-204ENST00000488454 ALKAL1Q6UXT8 129 aa11.16□□□□□ -0.62
SKA1-204ENST00000488454 INTS8Q75QN2 995 aaKnown RBP11.16□□□□□ -0.62
SKA1-204ENST00000488454 FILIP1Q7Z7B0 1213 aa11.16□□□□□ -0.62
SKA1-204ENST00000488454 BRSK2Q8IWQ3 736 aa11.16□□□□□ -0.62
SKA1-204ENST00000488454 ZSWIM2Q8NEG5 633 aa11.16□□□□□ -0.62
SKA1-204ENST00000488454 ENOX1Q8TC92 643 aaKnown RBP11.16□□□□□ -0.62
SKA1-204ENST00000488454 CCDC127Q96BQ5 260 aa11.16□□□□□ -0.62
SKA1-204ENST00000488454 ZNF689Q96CS4 500 aaPredicted RBP11.16□□□□□ -0.62
SKA1-204ENST00000488454 EEF2KMTQ96G04 330 aa11.16□□□□□ -0.62
SKA1-204ENST00000488454 ZFP42Q96MM3 310 aa11.16□□□□□ -0.62
SKA1-204ENST00000488454 DUSP9Q99956 384 aaKnown RBP11.16□□□□□ -0.62
SKA1-204ENST00000488454 MKNK1Q9BUB5 465 aa11.16□□□□□ -0.62
SKA1-204ENST00000488454 REPIN1Q9BWE0 567 aaKnown RBP11.16□□□□□ -0.62
SKA1-204ENST00000488454 METTL14Q9HCE5 456 aaKnown RBP11.16□□□□□ -0.62
SKA1-204ENST00000488454 RNF19AQ9NV58 838 aa11.16□□□□□ -0.62
SKA1-204ENST00000488454 CNTN3Q9P232 1028 aa11.16□□□□□ -0.62
SKA1-204ENST00000488454 MAGEC2Q9UBF1 373 aaPredicted RBP11.16□□□□□ -0.62
SKA1-204ENST00000488454 DERAQ9Y315 318 aa11.16□□□□□ -0.62
SKA1-204ENST00000488454 R3HCC1Q9Y3T6 440 aaKnown RBP11.16□□□□□ -0.62
SKA1-204ENST00000488454 BECN2A8MW95 431 aa11.15□□□□□ -0.62
SKA1-204ENST00000488454 INPPL1O15357 1258 aa11.15□□□□□ -0.62
SKA1-204ENST00000488454 SLC16A3O15427 465 aaKnown RBP11.15□□□□□ -0.62
SKA1-204ENST00000488454 AKAP3O75969 853 aa11.15□□□□□ -0.62
SKA1-204ENST00000488454 ADRB2P07550 413 aa11.15□□□□□ -0.62
SKA1-204ENST00000488454 DLATP10515 647 aaKnown RBP11.15□□□□□ -0.62
SKA1-204ENST00000488454 TNNI1P19237 187 aa11.15□□□□□ -0.62
SKA1-204ENST00000488454 ALDH7A1P49419 539 aaKnown RBP11.15□□□□□ -0.62
SKA1-204ENST00000488454 VAMP7P51809 220 aa11.15□□□□□ -0.62
SKA1-204ENST00000488454 AFF1P51825 1210 aaKnown RBP11.15□□□□□ -0.62
SKA1-204ENST00000488454 SMAD3P84022 425 aaKnown RBP11.15□□□□□ -0.62
SKA1-204ENST00000488454 TFAMQ00059 246 aaKnown RBP11.15□□□□□ -0.62
SKA1-204ENST00000488454 SPAG1Q07617 926 aa11.15□□□□□ -0.62
SKA1-204ENST00000488454 CYP24A1Q07973 514 aa11.15□□□□□ -0.62
SKA1-204ENST00000488454 TMEM132DQ14C87 1099 aa11.15□□□□□ -0.62
SKA1-204ENST00000488454 PSMD6Q15008 389 aa11.15□□□□□ -0.62
SKA1-204ENST00000488454 DUOXA2Q1HG44 320 aa11.15□□□□□ -0.62
SKA1-204ENST00000488454 LRIT3Q3SXY7 679 aa11.15□□□□□ -0.62
SKA1-204ENST00000488454 XKR4Q5GH76 650 aa11.15□□□□□ -0.62
SKA1-204ENST00000488454 GLRA4Q5JXX5 417 aa11.15□□□□□ -0.62
SKA1-204ENST00000488454 FAM109BQ6ICB4 259 aaPredicted RBP11.15□□□□□ -0.62
SKA1-204ENST00000488454 NT5DC4Q86YG4 428 aa11.15□□□□□ -0.62
SKA1-204ENST00000488454 FAM114A1Q8IWE2 563 aa11.15□□□□□ -0.62
SKA1-204ENST00000488454 BEST2Q8NFU1 509 aa11.15□□□□□ -0.62
SKA1-204ENST00000488454 MFSD14AQ96MC6 490 aa11.15□□□□□ -0.62
SKA1-204ENST00000488454 PDE11AQ9HCR9 933 aa11.15□□□□□ -0.62
SKA1-204ENST00000488454 TBC1D13Q9NVG8 400 aa11.15□□□□□ -0.62
SKA1-204ENST00000488454 MIOSQ9NXC5 875 aa11.15□□□□□ -0.62
SKA1-204ENST00000488454 ARMCX3Q9UH62 379 aaPredicted RBP11.15□□□□□ -0.62
SKA1-204ENST00000488454 UBQLN1Q9UMX0 589 aaKnown RBP11.15□□□□□ -0.62
SKA1-204ENST00000488454 PDE4DIPQ5VU43 2346 aa11.14□□□□□ -0.63
SKA1-204ENST00000488454 TRIM66O15016 1216 aa11.14□□□□□ -0.63
SKA1-204ENST00000488454 STX10O60499 249 aa11.14□□□□□ -0.63
SKA1-204ENST00000488454 TNNC2P02585 160 aa11.14□□□□□ -0.63
SKA1-204ENST00000488454 TMEM191BP0C7N4 346 aa11.14□□□□□ -0.63
SKA1-204ENST00000488454 MYOGP15173 224 aa11.14□□□□□ -0.63
SKA1-204ENST00000488454 LAG3P18627 525 aa11.14□□□□□ -0.63
SKA1-204ENST00000488454 OR1G1P47890 313 aa11.14□□□□□ -0.63
SKA1-204ENST00000488454 ZNF165P49910 485 aa11.14□□□□□ -0.63
SKA1-204ENST00000488454 AP3M2P53677 418 aa11.14□□□□□ -0.63
SKA1-204ENST00000488454 TPM4P67936 248 aa11.14□□□□□ -0.63
SKA1-204ENST00000488454 MYL5Q02045 173 aa11.14□□□□□ -0.63
SKA1-204ENST00000488454 TUSC3Q13454 348 aa11.14□□□□□ -0.63
SKA1-204ENST00000488454 JADE1Q6IE81 842 aa11.14□□□□□ -0.63
SKA1-204ENST00000488454 LRSAM1Q6UWE0 723 aa11.14□□□□□ -0.63
SKA1-204ENST00000488454 C11orf57Q6ZUT1 292 aaPredicted RBP11.14□□□□□ -0.63
SKA1-204ENST00000488454 FRMD5Q7Z6J6 570 aa11.14□□□□□ -0.63
SKA1-204ENST00000488454 ZC3H3Q8IXZ2 948 aaKnown RBP11.14□□□□□ -0.63
SKA1-204ENST00000488454 GSTCDQ8NEC7 633 aa11.14□□□□□ -0.63
SKA1-204ENST00000488454 ANKRD36BP1Q96IX9 119 aa11.14□□□□□ -0.63
SKA1-204ENST00000488454 ZMAT2Q96NC0 199 aaKnown RBP11.14□□□□□ -0.63
SKA1-204ENST00000488454 BPIFA3Q9BQP9 254 aa11.14□□□□□ -0.63
SKA1-204ENST00000488454 FUCA2Q9BTY2 467 aa11.14□□□□□ -0.63
SKA1-204ENST00000488454 COLEC11Q9BWP8 271 aa11.14□□□□□ -0.63
SKA1-204ENST00000488454 PBX4Q9BYU1 374 aa11.14□□□□□ -0.63
SKA1-204ENST00000488454 TSPY26PQ9H489 355 aa11.14□□□□□ -0.63
SKA1-204ENST00000488454 THAP9Q9H5L6 903 aa11.14□□□□□ -0.63
SKA1-204ENST00000488454 SLC28A3Q9HAS3 691 aa11.14□□□□□ -0.63
SKA1-204ENST00000488454 FAN1Q9Y2M0 1017 aa11.14□□□□□ -0.63
SKA1-204ENST00000488454 RWDD3Q9Y3V2 267 aa11.14□□□□□ -0.63
SKA1-204ENST00000488454 C2CD2Q9Y426 696 aa11.14□□□□□ -0.63
SKA1-204ENST00000488454 PCDHB12Q9Y5F1 795 aa11.14□□□□□ -0.63
SKA1-204ENST00000488454 MRPL42Q9Y6G3 142 aaKnown RBP11.14□□□□□ -0.63
SKA1-204ENST00000488454 CEP290O15078 2479 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 TTC3P53804 2025 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 CASTOR2A6NHX0 329 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 PTGESO14684 152 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 IKBKBO14920 756 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 ZC3H11AO75152 810 aaKnown RBP eCLIP11.13□□□□□ -0.63
SKA1-204ENST00000488454 PHACTR2O75167 634 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 DDHD2O94830 711 aa11.13□□□□□ -0.63
SKA1-204ENST00000488454 CA3P07451 260 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms