RNA–Protein interactions for RNA: ENST00000487401.1

SREBF1-215, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-215	ENST00000487401	SLC10A6	Q3KNW5	377 aa		13.59	□□□□□ -0.23
SREBF1-215	ENST00000487401	VARS2	Q5ST30	1063 aa	Known RBP	13.59	□□□□□ -0.23
SREBF1-215	ENST00000487401	HAUS6	Q7Z4H7	955 aa		13.59	□□□□□ -0.23
SREBF1-215	ENST00000487401	APPL2	Q8NEU8	664 aa		13.59	□□□□□ -0.23
SREBF1-215	ENST00000487401	RTP3	Q9BQQ7	232 aa		13.59	□□□□□ -0.23
SREBF1-215	ENST00000487401	ZHX3	Q9H4I2	956 aa		13.59	□□□□□ -0.23
SREBF1-215	ENST00000487401	PLEKHA5	Q9HAU0	1116 aa		13.59	□□□□□ -0.23
SREBF1-215	ENST00000487401	PARVG	Q9HBI0	331 aa		13.59	□□□□□ -0.23
SREBF1-215	ENST00000487401	FAM86C1	Q9NVL1	165 aa		13.59	□□□□□ -0.23
SREBF1-215	ENST00000487401	PRRG1	O14668	218 aa		13.58	□□□□□ -0.24
SREBF1-215	ENST00000487401	PLCG1	P19174	1290 aa		13.58	□□□□□ -0.24
SREBF1-215	ENST00000487401	AOC1	P19801	751 aa		13.58	□□□□□ -0.24
SREBF1-215	ENST00000487401	MCM4	P33991	863 aa		13.58	□□□□□ -0.24
SREBF1-215	ENST00000487401	HTR4	Q13639	388 aa		13.58	□□□□□ -0.24
SREBF1-215	ENST00000487401	MCM6	Q14566	821 aa		13.58	□□□□□ -0.24
SREBF1-215	ENST00000487401	KARS	Q15046	597 aa	Known RBP	13.58	□□□□□ -0.24
SREBF1-215	ENST00000487401	RAD54L	Q92698	747 aa		13.58	□□□□□ -0.24
SREBF1-215	ENST00000487401	REEP2	Q9BRK0	252 aa		13.58	□□□□□ -0.24
SREBF1-215	ENST00000487401	KCNH3	Q9ULD8	1083 aa		13.58	□□□□□ -0.24
SREBF1-215	ENST00000487401	CA14	Q9ULX7	337 aa		13.58	□□□□□ -0.24
SREBF1-215	ENST00000487401	TBX20	Q9UMR3	447 aa		13.58	□□□□□ -0.24
SREBF1-215	ENST00000487401	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	13.58	□□□□□ -0.24
SREBF1-215	ENST00000487401	NUMBL	Q9Y6R0	609 aa		13.58	□□□□□ -0.24
SREBF1-215	ENST00000487401		K7ENM7	598 aa		13.57	□□□□□ -0.24
SREBF1-215	ENST00000487401	HNRNPDL	O14979	420 aa	Known RBP	13.57	□□□□□ -0.24
SREBF1-215	ENST00000487401	TBCA	O75347	108 aa	Known RBP	13.57	□□□□□ -0.24
SREBF1-215	ENST00000487401	LRG1	P02750	347 aa		13.57	□□□□□ -0.24
SREBF1-215	ENST00000487401	CXCL8	P10145	99 aa		13.57	□□□□□ -0.24
SREBF1-215	ENST00000487401	NPR3	P17342	541 aa		13.57	□□□□□ -0.24
SREBF1-215	ENST00000487401	ABCD1	P33897	745 aa		13.57	□□□□□ -0.24
SREBF1-215	ENST00000487401	PPP2R3A	Q06190	1150 aa		13.57	□□□□□ -0.24
SREBF1-215	ENST00000487401	CUL4A	Q13619	759 aa		13.57	□□□□□ -0.24
SREBF1-215	ENST00000487401	CTXN3	Q4LDR2	81 aa		13.57	□□□□□ -0.24
SREBF1-215	ENST00000487401	PABPC1L	Q4VXU2	614 aa	Known RBP	13.57	□□□□□ -0.24
SREBF1-215	ENST00000487401	CWF19L1	Q69YN2	538 aa	Known RBP	13.57	□□□□□ -0.24
SREBF1-215	ENST00000487401	SLC8B1	Q6J4K2	584 aa		13.57	□□□□□ -0.24
SREBF1-215	ENST00000487401	MTSS1L	Q765P7	747 aa		13.57	□□□□□ -0.24
SREBF1-215	ENST00000487401	ST13P5	Q8NFI4	369 aa	Predicted RBP	13.57	□□□□□ -0.24
SREBF1-215	ENST00000487401	ZNF461	Q8TAF7	563 aa		13.57	□□□□□ -0.24
SREBF1-215	ENST00000487401	ITFG1	Q8TB96	612 aa		13.57	□□□□□ -0.24
SREBF1-215	ENST00000487401	FGF13	Q92913	245 aa		13.57	□□□□□ -0.24
SREBF1-215	ENST00000487401	KIF12	Q96FN5	646 aa		13.57	□□□□□ -0.24
SREBF1-215	ENST00000487401	SUSD3	Q96L08	255 aa		13.57	□□□□□ -0.24
SREBF1-215	ENST00000487401	RPF1	Q9H9Y2	349 aa	Known RBP	13.57	□□□□□ -0.24
SREBF1-215	ENST00000487401	DNMT3B	Q9UBC3	853 aa	Known RBP	13.57	□□□□□ -0.24
SREBF1-215	ENST00000487401	MRPS23	Q9Y3D9	190 aa	Known RBP	13.57	□□□□□ -0.24
SREBF1-215	ENST00000487401	PIEZO1	Q92508	2521 aa		13.57	□□□□□ -0.24
SREBF1-215	ENST00000487401	WDFY4	Q6ZS81	3184 aa		13.57	□□□□□ -0.24
SREBF1-215	ENST00000487401	ARID2	Q68CP9	1835 aa		13.56	□□□□□ -0.24
SREBF1-215	ENST00000487401	MEFV	O15553	781 aa	Predicted RBP	13.56	□□□□□ -0.24
SREBF1-215	ENST00000487401	XPOT	O43592	962 aa	Known RBP	13.56	□□□□□ -0.24
SREBF1-215	ENST00000487401	PI15	O43692	258 aa		13.56	□□□□□ -0.24
SREBF1-215	ENST00000487401	TRAK2	O60296	914 aa		13.56	□□□□□ -0.24
SREBF1-215	ENST00000487401	DDIT3	P35638	169 aa		13.56	□□□□□ -0.24
SREBF1-215	ENST00000487401	ROR1	Q01973	937 aa		13.56	□□□□□ -0.24
SREBF1-215	ENST00000487401	GRIN1	Q05586	938 aa		13.56	□□□□□ -0.24
SREBF1-215	ENST00000487401	SPAG1	Q07617	926 aa		13.56	□□□□□ -0.24
SREBF1-215	ENST00000487401	ZNF280D	Q6N043	979 aa		13.56	□□□□□ -0.24
SREBF1-215	ENST00000487401	PARM1	Q6UWI2	310 aa		13.56	□□□□□ -0.24
SREBF1-215	ENST00000487401	KRI1	Q8N9T8	703 aa	Known RBP	13.56	□□□□□ -0.24
SREBF1-215	ENST00000487401	GPR152	Q8TDT2	470 aa		13.56	□□□□□ -0.24
SREBF1-215	ENST00000487401	LARP4B	Q92615	738 aa	Known RBP	13.56	□□□□□ -0.24
SREBF1-215	ENST00000487401	KCNN1	Q92952	543 aa		13.56	□□□□□ -0.24
SREBF1-215	ENST00000487401	MSTO1	Q9BUK6	570 aa		13.56	□□□□□ -0.24
SREBF1-215	ENST00000487401	CYP4F11	Q9HBI6	524 aa		13.56	□□□□□ -0.24
SREBF1-215	ENST00000487401	BLOC1S4	Q9NUP1	217 aa		13.56	□□□□□ -0.24
SREBF1-215	ENST00000487401	HCFC1R1	Q9NWW0	138 aa		13.56	□□□□□ -0.24
SREBF1-215	ENST00000487401	CCDC39	Q9UFE4	941 aa		13.56	□□□□□ -0.24
SREBF1-215	ENST00000487401	TUBGCP4	Q9UGJ1	667 aa		13.56	□□□□□ -0.24
SREBF1-215	ENST00000487401	FBXL5	Q9UKA1	691 aa		13.56	□□□□□ -0.24
SREBF1-215	ENST00000487401	UBQLN1	Q9UMX0	589 aa	Known RBP	13.56	□□□□□ -0.24
SREBF1-215	ENST00000487401	PCDHB8	Q9UN66	801 aa		13.56	□□□□□ -0.24
SREBF1-215	ENST00000487401	TTC26	A0AVF1	554 aa		13.55	□□□□□ -0.24
SREBF1-215	ENST00000487401	ARHGEF37	A1IGU5	675 aa		13.55	□□□□□ -0.24
SREBF1-215	ENST00000487401	KRBA1	A5PL33	1030 aa		13.55	□□□□□ -0.24
SREBF1-215	ENST00000487401	LACTBL1	A8MY62	500 aa		13.55	□□□□□ -0.24
SREBF1-215	ENST00000487401	OGT	O15294	1046 aa		13.55	□□□□□ -0.24
SREBF1-215	ENST00000487401	TBC1D4	O60343	1298 aa		13.55	□□□□□ -0.24
SREBF1-215	ENST00000487401	ABLIM3	O94929	683 aa		13.55	□□□□□ -0.24
SREBF1-215	ENST00000487401	RHO	P08100	348 aa		13.55	□□□□□ -0.24
SREBF1-215	ENST00000487401	ATF2	P15336	505 aa		13.55	□□□□□ -0.24
SREBF1-215	ENST00000487401	PTPN2	P17706	415 aa		13.55	□□□□□ -0.24
SREBF1-215	ENST00000487401	CYP3A5	P20815	502 aa		13.55	□□□□□ -0.24
SREBF1-215	ENST00000487401	ZNF131	P52739	623 aa		13.55	□□□□□ -0.24
SREBF1-215	ENST00000487401	MRPL58	Q14197	206 aa	Known RBP	13.55	□□□□□ -0.24
SREBF1-215	ENST00000487401	TPGS2	Q68CL5	300 aa		13.55	□□□□□ -0.24
SREBF1-215	ENST00000487401	DTWD2	Q8NBA8	298 aa		13.55	□□□□□ -0.24
SREBF1-215	ENST00000487401	LRRC15	Q8TF66	581 aa		13.55	□□□□□ -0.24
SREBF1-215	ENST00000487401	DDX12P	Q92771	950 aa		13.55	□□□□□ -0.24
SREBF1-215	ENST00000487401	FGF14	Q92915	247 aa		13.55	□□□□□ -0.24
SREBF1-215	ENST00000487401	FAM212A	Q96EL1	285 aa		13.55	□□□□□ -0.24
SREBF1-215	ENST00000487401	TSPAN18	Q96SJ8	248 aa		13.55	□□□□□ -0.24
SREBF1-215	ENST00000487401	RPP25	Q9BUL9	199 aa	Known RBP	13.55	□□□□□ -0.24
SREBF1-215	ENST00000487401	CCSER1	Q9C0I3	900 aa		13.55	□□□□□ -0.24
SREBF1-215	ENST00000487401	HAPLN2	Q9GZV7	340 aa		13.55	□□□□□ -0.24
SREBF1-215	ENST00000487401	TBC1D17	Q9HA65	648 aa		13.55	□□□□□ -0.24
SREBF1-215	ENST00000487401	ARHGEF3	Q9NR81	526 aa		13.55	□□□□□ -0.24
SREBF1-215	ENST00000487401	SLC2A4RG	Q9NR83	387 aa		13.55	□□□□□ -0.24
SREBF1-215	ENST00000487401	MAFF	Q9ULX9	164 aa		13.55	□□□□□ -0.24
SREBF1-215	ENST00000487401	CLIC4	Q9Y696	253 aa		13.55	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms