RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 RNF19AQ9NV58 838 aa8.96□□□□□ -0.98
SF3A1-208ENST00000485618 NUB1Q9Y5A7 615 aa8.96□□□□□ -0.98
SF3A1-208ENST00000485618 SF3B1O75533 1304 aaKnown RBP eCLIP8.96□□□□□ -0.98
SF3A1-208ENST00000485618 COL4A6Q14031 1691 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 MEIS3P2A8K0S8 358 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 IKBKBO14920 756 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 SLC16A3O15427 465 aaKnown RBP8.95□□□□□ -0.98
SF3A1-208ENST00000485618 PHACTR2O75167 634 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 FGF18O76093 207 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 B3GAT3O94766 335 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 CAVIN2O95810 425 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 ADRB2P07550 413 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 TMEM191BP0C7N4 346 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 TNNI1P19237 187 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 HOXD13P35453 343 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 GATMP50440 423 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 RBP5P82980 135 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 TFAMQ00059 246 aaKnown RBP8.95□□□□□ -0.98
SF3A1-208ENST00000485618 DSC1Q08554 894 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 CETN1Q12798 172 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 MYO1EQ12965 1108 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 PSMD6Q15008 389 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 SEZ6Q53EL9 994 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 ISM2Q6H9L7 571 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 LRRC55Q6ZSA7 311 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 TMC7Q7Z402 723 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 DDX53Q86TM3 631 aaKnown RBP8.95□□□□□ -0.98
SF3A1-208ENST00000485618 WDR49Q8IV35 697 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 FAM114A1Q8IWE2 563 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 COLGALT2Q8IYK4 626 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 GPR65Q8IYL9 337 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 CSGALNACT2Q8N6G5 542 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 CEP120Q8N960 986 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 KLHL23Q8NBE8 558 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 RDH13Q8NBN7 331 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 CCDC150Q8NCX0 1101 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 APPL2Q8NEU8 664 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 TMC2Q8TDI7 906 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 NELFBQ8WX92 580 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 ERCC4Q92889 916 aaPredicted RBP8.95□□□□□ -0.98
SF3A1-208ENST00000485618 MRPL38Q96DV4 380 aaKnown RBP8.95□□□□□ -0.98
SF3A1-208ENST00000485618 SAAL1Q96ER3 474 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 PPP1R10Q96QC0 940 aaKnown RBP8.95□□□□□ -0.98
SF3A1-208ENST00000485618 C17orf80Q9BSJ5 609 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 ANP32EQ9BTT0 268 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 FGFBP2Q9BYJ0 223 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 DMAC2Q9NW81 257 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 MAGEC2Q9UBF1 373 aaPredicted RBP8.95□□□□□ -0.98
SF3A1-208ENST00000485618 DPP7Q9UHL4 492 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 RWDD2AQ9UIY3 292 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 PLAGL2Q9UPG8 496 aa8.95□□□□□ -0.98
SF3A1-208ENST00000485618 REV3LO60673 3130 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 TRANK1O15050 2925 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 GOLGA8IPA6NC78 632 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 GOLGA8JA6NMD2 632 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 TISP43B9A030 160 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 RBAK-RBAKDNI3L0D1 243 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 PTGESO14684 152 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 NRP1O14786 923 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 FAM189A1O60320 539 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 TPM2P07951 284 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 SRGAP2BP0DMP2 458 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 CCDC192P0DO97 292 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 DLATP10515 647 aaKnown RBP8.94□□□□□ -0.98
SF3A1-208ENST00000485618 P4HA1P13674 534 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 TRIM21P19474 475 aaKnown RBP8.94□□□□□ -0.98
SF3A1-208ENST00000485618 KCNA5P22460 613 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 LRPAP1P30533 357 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 GTF2H1P32780 548 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 TNFSF9P41273 254 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 SLC11A1P49279 550 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 CYP24A1Q07973 514 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 TRPC3Q13507 836 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 SMC1AQ14683 1233 aaKnown RBP8.94□□□□□ -0.98
SF3A1-208ENST00000485618 UPP1Q16831 310 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 USP41Q3LFD5 358 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 TIGD5Q53EQ6 642 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 SPATA1Q5VX52 437 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 ANKRD40Q6AI12 368 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 CAVIN1Q6NZI2 390 aaKnown RBP8.94□□□□□ -0.98
SF3A1-208ENST00000485618 CRELD2Q6UXH1 353 aaPredicted RBP8.94□□□□□ -0.98
SF3A1-208ENST00000485618 FILIP1Q7Z7B0 1213 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 ZNF280BQ86YH2 543 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 FAM186BQ8IYM0 893 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 SMYD4Q8IYR2 804 aaPredicted RBP8.94□□□□□ -0.98
SF3A1-208ENST00000485618 SLC39A11Q8N1S5 342 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 GSTCDQ8NEC7 633 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 ANKRD20A12PQ8NF67 263 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 KHSRPQ92945 711 aaKnown RBP eCLIP8.94□□□□□ -0.98
SF3A1-208ENST00000485618 CCDC127Q96BQ5 260 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 IGSF21Q96ID5 467 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 MFSD14AQ96MC6 490 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 ZNF560Q96MR9 790 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 EMILIN2Q9BXX0 1053 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 OXCT2Q9BYC2 517 aaPredicted RBP8.94□□□□□ -0.98
SF3A1-208ENST00000485618 HAPLN2Q9GZV7 340 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 ENTPD7Q9NQZ7 604 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 TLR9Q9NR96 1032 aa8.94□□□□□ -0.98
SF3A1-208ENST00000485618 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.94□□□□□ -0.98
SF3A1-208ENST00000485618 MRPL17Q9NRX2 175 aaKnown RBP8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms