RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 PPFIA4O75335 1185 aa4.42□□□□□ -1.7
VPS50-216ENST00000484954 CDKL5O76039 1030 aa4.42□□□□□ -1.7
VPS50-216ENST00000484954 LMNAP02545 664 aaKnown RBP4.42□□□□□ -1.7
VPS50-216ENST00000484954 ERBB2P04626 1255 aa4.42□□□□□ -1.7
VPS50-216ENST00000484954 SBK3P0C264 359 aa4.42□□□□□ -1.7
VPS50-216ENST00000484954 EGR2P11161 476 aaPredicted RBP4.42□□□□□ -1.7
VPS50-216ENST00000484954 DDCP20711 480 aa4.42□□□□□ -1.7
VPS50-216ENST00000484954 GCSHP23434 173 aa4.42□□□□□ -1.7
VPS50-216ENST00000484954 EDNRBP24530 442 aa4.42□□□□□ -1.7
VPS50-216ENST00000484954 GUCY2FP51841 1108 aa4.42□□□□□ -1.7
VPS50-216ENST00000484954 NOMO3P69849 1222 aa4.42□□□□□ -1.7
VPS50-216ENST00000484954 PCBP2Q15366 365 aaKnown RBP eCLIP4.42□□□□□ -1.7
VPS50-216ENST00000484954 NOMO2Q5JPE7 1267 aa4.42□□□□□ -1.7
VPS50-216ENST00000484954 ZKSCAN2Q63HK3 967 aa4.42□□□□□ -1.7
VPS50-216ENST00000484954 NECAB2Q7Z6G3 386 aa4.42□□□□□ -1.7
VPS50-216ENST00000484954 GPR149Q86SP6 731 aa4.42□□□□□ -1.7
VPS50-216ENST00000484954 LCORLQ8N3X6 602 aa4.42□□□□□ -1.7
VPS50-216ENST00000484954 LINC00476Q8WZB0 136 aa4.42□□□□□ -1.7
VPS50-216ENST00000484954 MARS2Q96GW9 593 aaKnown RBP4.42□□□□□ -1.7
VPS50-216ENST00000484954 FAXDC2Q96IV6 333 aa4.42□□□□□ -1.7
VPS50-216ENST00000484954 C7orf25Q9BPX7 421 aa4.42□□□□□ -1.7
VPS50-216ENST00000484954 ALOXE3Q9BYJ1 711 aa4.42□□□□□ -1.7
VPS50-216ENST00000484954 TOR3AQ9H497 397 aa4.42□□□□□ -1.7
VPS50-216ENST00000484954 GSTO2Q9H4Y5 243 aa4.42□□□□□ -1.7
VPS50-216ENST00000484954 MKS1Q9NXB0 559 aa4.42□□□□□ -1.7
VPS50-216ENST00000484954 PTGFRNQ9P2B2 879 aa4.42□□□□□ -1.7
VPS50-216ENST00000484954 HSFX1Q9UBD0 423 aa4.42□□□□□ -1.7
VPS50-216ENST00000484954 SALL3Q9BXA9 1300 aa4.42□□□□□ -1.7
VPS50-216ENST00000484954 CDHR4A6H8M9 788 aa4.41□□□□□ -1.7
VPS50-216ENST00000484954 MASP2O00187 686 aa4.41□□□□□ -1.7
VPS50-216ENST00000484954 GABRDO14764 452 aa4.41□□□□□ -1.7
VPS50-216ENST00000484954 KIAA0391O15091 583 aaKnown RBP4.41□□□□□ -1.7
VPS50-216ENST00000484954 MYBL2P10244 700 aa4.41□□□□□ -1.7
VPS50-216ENST00000484954 ITGAMP11215 1152 aa4.41□□□□□ -1.7
VPS50-216ENST00000484954 TYRP1P17643 537 aa4.41□□□□□ -1.7
VPS50-216ENST00000484954 CDK11BP21127 795 aaKnown RBP4.41□□□□□ -1.7
VPS50-216ENST00000484954 CLK3P49761 638 aaKnown RBP4.41□□□□□ -1.7
VPS50-216ENST00000484954 SEC24CP53992 1094 aa4.41□□□□□ -1.7
VPS50-216ENST00000484954 KRTAP10-7P60409 375 aaPredicted RBP4.41□□□□□ -1.7
VPS50-216ENST00000484954 SLFN5Q08AF3 891 aa4.41□□□□□ -1.7
VPS50-216ENST00000484954 IL10RAQ13651 578 aa4.41□□□□□ -1.7
VPS50-216ENST00000484954 ACAP2Q15057 778 aa4.41□□□□□ -1.7
VPS50-216ENST00000484954 C3orf36Q3SXR2 165 aa4.41□□□□□ -1.7
VPS50-216ENST00000484954 SYDE2Q5VT97 1194 aa4.41□□□□□ -1.7
VPS50-216ENST00000484954 OLFML1Q6UWY5 402 aa4.41□□□□□ -1.7
VPS50-216ENST00000484954 PRPF38AQ8NAV1 312 aaKnown RBP4.41□□□□□ -1.7
VPS50-216ENST00000484954 MTMR8Q96EF0 704 aa4.41□□□□□ -1.7
VPS50-216ENST00000484954 RNF31Q96EP0 1072 aa4.41□□□□□ -1.7
VPS50-216ENST00000484954 VSX1Q9NZR4 365 aaPredicted RBP4.41□□□□□ -1.7
VPS50-216ENST00000484954 FAM30AQ9NZY2 134 aa4.41□□□□□ -1.7
VPS50-216ENST00000484954 SERPINB13Q9UIV8 391 aa4.41□□□□□ -1.7
VPS50-216ENST00000484954 LIMCH1Q9UPQ0 1083 aa4.41□□□□□ -1.7
VPS50-216ENST00000484954 IPPQ9Y573 584 aa4.41□□□□□ -1.7
VPS50-216ENST00000484954 XPOTO43592 962 aaKnown RBP4.4□□□□□ -1.71
VPS50-216ENST00000484954 HLA-DOAP06340 250 aa4.4□□□□□ -1.71
VPS50-216ENST00000484954 WASP42768 502 aa4.4□□□□□ -1.71
VPS50-216ENST00000484954 PTH2RP49190 550 aa4.4□□□□□ -1.71
VPS50-216ENST00000484954 USP14P54578 494 aa4.4□□□□□ -1.71
VPS50-216ENST00000484954 CXADRP78310 365 aa4.4□□□□□ -1.71
VPS50-216ENST00000484954 ITKQ08881 620 aa4.4□□□□□ -1.71
VPS50-216ENST00000484954 ODF1Q14990 250 aa4.4□□□□□ -1.71
VPS50-216ENST00000484954 FLYWCH1Q4VC44 716 aa4.4□□□□□ -1.71
VPS50-216ENST00000484954 GJC2Q5T442 439 aaPredicted RBP4.4□□□□□ -1.71
VPS50-216ENST00000484954 SLC44A3Q8N4M1 653 aa4.4□□□□□ -1.71
VPS50-216ENST00000484954 SUPT20HQ8NEM7 779 aa4.4□□□□□ -1.71
VPS50-216ENST00000484954 IFI44Q8TCB0 444 aa4.4□□□□□ -1.71
VPS50-216ENST00000484954 KAT5Q92993 513 aa4.4□□□□□ -1.71
VPS50-216ENST00000484954 CYFIP2Q96F07 1278 aa4.4□□□□□ -1.71
VPS50-216ENST00000484954 TMX3Q96JJ7 454 aa4.4□□□□□ -1.71
VPS50-216ENST00000484954 TEKT5Q96M29 485 aa4.4□□□□□ -1.71
VPS50-216ENST00000484954 RNPEPQ9H4A4 650 aa4.4□□□□□ -1.71
VPS50-216ENST00000484954 MANSC1Q9H8J5 431 aa4.4□□□□□ -1.71
VPS50-216ENST00000484954 ALG13Q9NP73 1137 aaKnown RBP4.4□□□□□ -1.71
VPS50-216ENST00000484954 RNF181Q9P0P0 153 aa4.4□□□□□ -1.71
VPS50-216ENST00000484954 CCDC154A6NI56 674 aa4.39□□□□□ -1.71
VPS50-216ENST00000484954 KIAA0355O15063 1070 aa4.39□□□□□ -1.71
VPS50-216ENST00000484954 HTRA2O43464 458 aaPredicted RBP4.39□□□□□ -1.71
VPS50-216ENST00000484954 RHOBTB3O94955 611 aa4.39□□□□□ -1.71
VPS50-216ENST00000484954 FOSP01100 380 aaPredicted RBP4.39□□□□□ -1.71
VPS50-216ENST00000484954 CKBP12277 381 aa4.39□□□□□ -1.71
VPS50-216ENST00000484954 FCER1AP12319 257 aa4.39□□□□□ -1.71
VPS50-216ENST00000484954 MPLP40238 635 aa4.39□□□□□ -1.71
VPS50-216ENST00000484954 ZNF280AP59817 542 aaPredicted RBP4.39□□□□□ -1.71
VPS50-216ENST00000484954 GEN1Q17RS7 908 aa4.39□□□□□ -1.71
VPS50-216ENST00000484954 DACT2Q5SW24 774 aa4.39□□□□□ -1.71
VPS50-216ENST00000484954 RNF187Q5TA31 235 aaPredicted RBP4.39□□□□□ -1.71
VPS50-216ENST00000484954 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.39□□□□□ -1.71
VPS50-216ENST00000484954 TBC1D15Q8TC07 691 aa4.39□□□□□ -1.71
VPS50-216ENST00000484954 CAVIN3Q969G5 261 aa4.39□□□□□ -1.71
VPS50-216ENST00000484954 ZNF764Q96H86 408 aaPredicted RBP4.39□□□□□ -1.71
VPS50-216ENST00000484954 Q96MF0 132 aa4.39□□□□□ -1.71
VPS50-216ENST00000484954 DMRTA2Q96SC8 542 aa4.39□□□□□ -1.71
VPS50-216ENST00000484954 TLR10Q9BXR5 811 aa4.39□□□□□ -1.71
VPS50-216ENST00000484954 C11orf54Q9H0W9 315 aaPredicted RBP4.39□□□□□ -1.71
VPS50-216ENST00000484954 TMX1Q9H3N1 280 aa4.39□□□□□ -1.71
VPS50-216ENST00000484954 TNKSO95271 1327 aa4.39□□□□□ -1.71
VPS50-216ENST00000484954 KLHL33A6NCF5 533 aa4.38□□□□□ -1.71
VPS50-216ENST00000484954 GRM6O15303 877 aa4.38□□□□□ -1.71
VPS50-216ENST00000484954 TEX33O43247 280 aa4.38□□□□□ -1.71
VPS50-216ENST00000484954 GPANK1O95872 356 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms