RNA–Protein interactions for RNA: ENST00000478934.5

VPS52-217, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 2,602 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-217ENST00000478934 CACNA2D3Q8IZS8 1091 aa11.54□□□□□ -0.56
VPS52-217ENST00000478934 CNKSR2Q8WXI2 1034 aa11.54□□□□□ -0.56
VPS52-217ENST00000478934 ART4Q93070 314 aa11.54□□□□□ -0.56
VPS52-217ENST00000478934 ACSF2Q96CM8 615 aaPredicted RBP11.54□□□□□ -0.56
VPS52-217ENST00000478934 ZBTB10Q96DT7 871 aa11.54□□□□□ -0.56
VPS52-217ENST00000478934 TIPINQ9BVW5 301 aa11.54□□□□□ -0.56
VPS52-217ENST00000478934 C1orf112Q9NSG2 853 aa11.54□□□□□ -0.56
VPS52-217ENST00000478934 PI4K2BG5E9Z4 385 aa11.53□□□□□ -0.56
VPS52-217ENST00000478934 C4BPAP04003 597 aaKnown RBP11.53□□□□□ -0.56
VPS52-217ENST00000478934 NUDT17P0C025 328 aa11.53□□□□□ -0.56
VPS52-217ENST00000478934 CD58P19256 250 aa11.53□□□□□ -0.56
VPS52-217ENST00000478934 ACO1P21399 889 aaKnown RBP11.53□□□□□ -0.56
VPS52-217ENST00000478934 DRD4P21917 467 aa11.53□□□□□ -0.56
VPS52-217ENST00000478934 TNFSF9P41273 254 aa11.53□□□□□ -0.56
VPS52-217ENST00000478934 DRG2P55039 364 aaKnown RBP11.53□□□□□ -0.56
VPS52-217ENST00000478934 CYP1B1Q16678 543 aa11.53□□□□□ -0.56
VPS52-217ENST00000478934 ZNF394Q53GI3 561 aa11.53□□□□□ -0.56
VPS52-217ENST00000478934 BRDTQ58F21 947 aaPredicted RBP11.53□□□□□ -0.56
VPS52-217ENST00000478934 DALRD3Q5D0E6 543 aaKnown RBP11.53□□□□□ -0.56
VPS52-217ENST00000478934 CCDC50Q8IVM0 306 aa11.53□□□□□ -0.56
VPS52-217ENST00000478934 IFT74Q96LB3 600 aa11.53□□□□□ -0.56
VPS52-217ENST00000478934 FNBP1Q96RU3 617 aa11.53□□□□□ -0.56
VPS52-217ENST00000478934 MAP3K20Q9NYL2 800 aaKnown RBP11.53□□□□□ -0.56
VPS52-217ENST00000478934 UVRAGQ9P2Y5 699 aa11.53□□□□□ -0.56
VPS52-217ENST00000478934 ASIC3Q9UHC3 531 aa11.53□□□□□ -0.56
VPS52-217ENST00000478934 AGO2Q9UKV8 859 aaKnown RBP11.53□□□□□ -0.56
VPS52-217ENST00000478934 MTUS1Q9ULD2 1270 aa11.53□□□□□ -0.56
VPS52-217ENST00000478934 NUB1Q9Y5A7 615 aa11.53□□□□□ -0.56
VPS52-217ENST00000478934 CD2APQ9Y5K6 639 aa11.53□□□□□ -0.56
VPS52-217ENST00000478934 ECEL1O95672 775 aa11.53□□□□□ -0.56
VPS52-217ENST00000478934 CST3P01034 146 aaPredicted RBP11.53□□□□□ -0.56
VPS52-217ENST00000478934 RALAP11233 206 aa11.53□□□□□ -0.56
VPS52-217ENST00000478934 PSMC4P43686 418 aa11.53□□□□□ -0.56
VPS52-217ENST00000478934 SNRPFP62306 86 aaKnown RBP11.53□□□□□ -0.56
VPS52-217ENST00000478934 ERMARDQ5T6L9 678 aa11.53□□□□□ -0.56
VPS52-217ENST00000478934 TAX1BP1Q86VP1 789 aa11.53□□□□□ -0.56
VPS52-217ENST00000478934 LRRC34Q8IZ02 419 aa11.53□□□□□ -0.56
VPS52-217ENST00000478934 TRPM4Q8TD43 1214 aa11.53□□□□□ -0.56
VPS52-217ENST00000478934 SENP7Q9BQF6 1050 aa11.53□□□□□ -0.56
VPS52-217ENST00000478934 SLC40A1Q9NP59 571 aa11.53□□□□□ -0.56
VPS52-217ENST00000478934 PICK1Q9NRD5 415 aa11.53□□□□□ -0.56
VPS52-217ENST00000478934 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.53□□□□□ -0.56
VPS52-217ENST00000478934 PCDHB4Q9Y5E5 795 aa11.53□□□□□ -0.56
VPS52-217ENST00000478934 SPATA31C2B4DYI2 1134 aa11.52□□□□□ -0.57
VPS52-217ENST00000478934 PODXLO00592 558 aa11.52□□□□□ -0.57
VPS52-217ENST00000478934 FSCN2O14926 492 aa11.52□□□□□ -0.57
VPS52-217ENST00000478934 EXTL3O43909 919 aa11.52□□□□□ -0.57
VPS52-217ENST00000478934 VIMP08670 466 aaKnown RBP11.52□□□□□ -0.57
VPS52-217ENST00000478934 GCNT1Q02742 428 aa11.52□□□□□ -0.57
VPS52-217ENST00000478934 AUHQ13825 339 aaKnown RBP11.52□□□□□ -0.57
VPS52-217ENST00000478934 PPP2R5EQ16537 467 aa11.52□□□□□ -0.57
VPS52-217ENST00000478934 KYNUQ16719 465 aa11.52□□□□□ -0.57
VPS52-217ENST00000478934 ZACNQ401N2 412 aa11.52□□□□□ -0.57
VPS52-217ENST00000478934 ANKRD20A8PQ5CZ79 823 aa11.52□□□□□ -0.57
VPS52-217ENST00000478934 GKAP1Q5VSY0 366 aaPredicted RBP11.52□□□□□ -0.57
VPS52-217ENST00000478934 ZBTB33Q86T24 672 aa11.52□□□□□ -0.57
VPS52-217ENST00000478934 FAM212AQ96EL1 285 aa11.52□□□□□ -0.57
VPS52-217ENST00000478934 CHMP6Q96FZ7 201 aa11.52□□□□□ -0.57
VPS52-217ENST00000478934 DDX27Q96GQ7 796 aaKnown RBP11.52□□□□□ -0.57
VPS52-217ENST00000478934 ELAC2Q9BQ52 826 aaKnown RBP11.52□□□□□ -0.57
VPS52-217ENST00000478934 CDC42EP4Q9H3Q1 356 aaKnown RBP11.52□□□□□ -0.57
VPS52-217ENST00000478934 RBAKQ9NYW8 714 aaPredicted RBP11.52□□□□□ -0.57
VPS52-217ENST00000478934 TBK1Q9UHD2 729 aa11.52□□□□□ -0.57
VPS52-217ENST00000478934 KIAA1217Q5T5P2 1943 aa11.52□□□□□ -0.57
VPS52-217ENST00000478934 SUPT20HL2P0C7V6 817 aa11.52□□□□□ -0.57
VPS52-217ENST00000478934 KRT10P13645 584 aa11.52□□□□□ -0.57
VPS52-217ENST00000478934 GARTP22102 1010 aa11.52□□□□□ -0.57
VPS52-217ENST00000478934 IVDP26440 423 aa11.52□□□□□ -0.57
VPS52-217ENST00000478934 NSFP46459 744 aaKnown RBP11.52□□□□□ -0.57
VPS52-217ENST00000478934 MCCD1P59942 119 aaPredicted RBP11.52□□□□□ -0.57
VPS52-217ENST00000478934 RPL7AP62424 266 aaKnown RBP11.52□□□□□ -0.57
VPS52-217ENST00000478934 SUPT20HL1Q3ZLR7 823 aa11.52□□□□□ -0.57
VPS52-217ENST00000478934 HP1BP3Q5SSJ5 553 aaPredicted RBP11.52□□□□□ -0.57
VPS52-217ENST00000478934 HOOK3Q86VS8 718 aa11.52□□□□□ -0.57
VPS52-217ENST00000478934 CDR2LQ86X02 465 aaPredicted RBP11.52□□□□□ -0.57
VPS52-217ENST00000478934 GLIS1Q8NBF1 620 aa11.52□□□□□ -0.57
VPS52-217ENST00000478934 MCPH1Q8NEM0 835 aa11.52□□□□□ -0.57
VPS52-217ENST00000478934 ATXN2LQ8WWM7 1075 aaKnown RBP11.52□□□□□ -0.57
VPS52-217ENST00000478934 VTI1AQ96AJ9 217 aa11.52□□□□□ -0.57
VPS52-217ENST00000478934 PAGR1Q9BTK6 254 aa11.52□□□□□ -0.57
VPS52-217ENST00000478934 FAM129AQ9BZQ8 928 aa11.52□□□□□ -0.57
VPS52-217ENST00000478934 LRRC19Q9H756 370 aa11.52□□□□□ -0.57
VPS52-217ENST00000478934 CENPFP49454 3210 aa11.51□□□□□ -0.57
VPS52-217ENST00000478934 PASKQ96RG2 1323 aa11.51□□□□□ -0.57
VPS52-217ENST00000478934 SPDYE16A6NNV3 312 aaPredicted RBP11.51□□□□□ -0.57
VPS52-217ENST00000478934 K7ERI5 159 aa11.51□□□□□ -0.57
VPS52-217ENST00000478934 ITGA8P53708 1063 aa11.51□□□□□ -0.57
VPS52-217ENST00000478934 EIF3BP55884 814 aaKnown RBP11.51□□□□□ -0.57
VPS52-217ENST00000478934 WDR44Q5JSH3 913 aa11.51□□□□□ -0.57
VPS52-217ENST00000478934 KAZNQ674X7 775 aa11.51□□□□□ -0.57
VPS52-217ENST00000478934 MON1BQ7L1V2 547 aa11.51□□□□□ -0.57
VPS52-217ENST00000478934 PCYT2Q99447 389 aa11.51□□□□□ -0.57
VPS52-217ENST00000478934 MSTO1Q9BUK6 570 aa11.51□□□□□ -0.57
VPS52-217ENST00000478934 ZNF302Q9NR11 478 aa11.51□□□□□ -0.57
VPS52-217ENST00000478934 KLC4Q9NSK0 619 aa11.51□□□□□ -0.57
VPS52-217ENST00000478934 INTS9Q9NV88 658 aaKnown RBP11.51□□□□□ -0.57
VPS52-217ENST00000478934 MTRF1LQ9UGC7 380 aaKnown RBP11.51□□□□□ -0.57
VPS52-217ENST00000478934 PCDHB2Q9Y5E7 798 aa11.51□□□□□ -0.57
VPS52-217ENST00000478934 WDR81Q562E7 1941 aa11.51□□□□□ -0.57
VPS52-217ENST00000478934 LOXHD1Q8IVV2 1947 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms