RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 FAM50BQ9Y247 325 aa16.96■□□□□ 0.31
HMGA1-206ENST00000478214 NCOR1O75376 2440 aa16.96■□□□□ 0.3
HMGA1-206ENST00000478214 TRIP11Q15643 1979 aa16.95■□□□□ 0.3
HMGA1-206ENST00000478214 PVALEFA0A1B0GWK0 134 aa16.95■□□□□ 0.3
HMGA1-206ENST00000478214 KLRC4O43908 158 aa16.95■□□□□ 0.3
HMGA1-206ENST00000478214 RPL17P18621 184 aaKnown RBP16.95■□□□□ 0.3
HMGA1-206ENST00000478214 RPL9P32969 192 aaKnown RBP16.95■□□□□ 0.3
HMGA1-206ENST00000478214 CLCN4P51793 760 aa16.95■□□□□ 0.3
HMGA1-206ENST00000478214 GUCY2FP51841 1108 aa16.95■□□□□ 0.3
HMGA1-206ENST00000478214 PRSS55Q6UWB4 352 aaPredicted RBP16.95■□□□□ 0.3
HMGA1-206ENST00000478214 CRELD2Q6UXH1 353 aaPredicted RBP16.95■□□□□ 0.3
HMGA1-206ENST00000478214 EPM2AIP1Q7L775 607 aaPredicted RBP16.95■□□□□ 0.3
HMGA1-206ENST00000478214 PPFIBP1Q86W92 1011 aa16.95■□□□□ 0.3
HMGA1-206ENST00000478214 GPR65Q8IYL9 337 aa16.95■□□□□ 0.3
HMGA1-206ENST00000478214 PIK3R5Q8WYR1 880 aa16.95■□□□□ 0.3
HMGA1-206ENST00000478214 SAAL1Q96ER3 474 aa16.95■□□□□ 0.3
HMGA1-206ENST00000478214 CBWD1Q9BRT8 395 aa16.95■□□□□ 0.3
HMGA1-206ENST00000478214 S1PR5Q9H228 398 aa16.95■□□□□ 0.3
HMGA1-206ENST00000478214 UBQLN1Q9UMX0 589 aaKnown RBP16.95■□□□□ 0.3
HMGA1-206ENST00000478214 USP15Q9Y4E8 981 aaPredicted RBP16.95■□□□□ 0.3
HMGA1-206ENST00000478214 MUC3AQ02505 3323 aa16.95■□□□□ 0.3
HMGA1-206ENST00000478214 TCHHQ07283 1943 aa16.94■□□□□ 0.3
HMGA1-206ENST00000478214 EIF3DO15371 548 aaKnown RBP eCLIP16.94■□□□□ 0.35e-11■□□□□ 8.1
HMGA1-206ENST00000478214 ADH1AP07327 375 aa16.94■□□□□ 0.3
HMGA1-206ENST00000478214 HOXB8P17481 243 aaPredicted RBP16.94■□□□□ 0.3
HMGA1-206ENST00000478214 GARTP22102 1010 aa16.94■□□□□ 0.3
HMGA1-206ENST00000478214 JADE1Q6IE81 842 aa16.94■□□□□ 0.3
HMGA1-206ENST00000478214 KANK3Q6NY19 840 aa16.94■□□□□ 0.3
HMGA1-206ENST00000478214 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.94■□□□□ 0.3
HMGA1-206ENST00000478214 GLYCTKQ8IVS8 523 aa16.94■□□□□ 0.3
HMGA1-206ENST00000478214 CD302Q8IX05 232 aa16.94■□□□□ 0.3
HMGA1-206ENST00000478214 C12orf76Q8N812 135 aaPredicted RBP16.94■□□□□ 0.3
HMGA1-206ENST00000478214 LNX1Q8TBB1 728 aaPredicted RBP16.94■□□□□ 0.3
HMGA1-206ENST00000478214 ZNF507Q8TCN5 953 aa16.94■□□□□ 0.3
HMGA1-206ENST00000478214 FBXL18Q96ME1 805 aa16.94■□□□□ 0.3
HMGA1-206ENST00000478214 FAM213AQ9BRX8 229 aa16.94■□□□□ 0.3
HMGA1-206ENST00000478214 PCIF1Q9H4Z3 704 aa16.94■□□□□ 0.3
HMGA1-206ENST00000478214 SLC39A2Q9NP94 309 aa16.94■□□□□ 0.3
HMGA1-206ENST00000478214 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.94■□□□□ 0.37e-16■■□□□ 11.5
HMGA1-206ENST00000478214 FNIP2Q9P278 1114 aa16.94■□□□□ 0.3
HMGA1-206ENST00000478214 CITO14578 2027 aa16.94■□□□□ 0.3
HMGA1-206ENST00000478214 BDP1A6H8Y1 2624 aa16.93■□□□□ 0.3
HMGA1-206ENST00000478214 GOLGA8IPA6NC78 632 aa16.93■□□□□ 0.3
HMGA1-206ENST00000478214 GOLGA8JA6NMD2 632 aa16.93■□□□□ 0.3
HMGA1-206ENST00000478214 TRAPPC3O43617 180 aa16.93■□□□□ 0.3
HMGA1-206ENST00000478214 ZNF202O95125 648 aa16.93■□□□□ 0.3
HMGA1-206ENST00000478214 NFICP08651 508 aa16.93■□□□□ 0.3
HMGA1-206ENST00000478214 PRR29P0C7W0 189 aa16.93■□□□□ 0.3
HMGA1-206ENST00000478214 CYP3A5P20815 502 aa16.93■□□□□ 0.3
HMGA1-206ENST00000478214 FGFR3P22607 806 aa16.93■□□□□ 0.3
HMGA1-206ENST00000478214 TKTP29401 623 aaKnown RBP16.93■□□□□ 0.3
HMGA1-206ENST00000478214 PSMD5Q16401 504 aa16.93■□□□□ 0.3
HMGA1-206ENST00000478214 KRBA2Q6ZNG9 492 aa16.93■□□□□ 0.3
HMGA1-206ENST00000478214 PALB2Q86YC2 1186 aa16.93■□□□□ 0.3
HMGA1-206ENST00000478214 SCFD1Q8WVM8 642 aa16.93■□□□□ 0.3
HMGA1-206ENST00000478214 TSPAN18Q96SJ8 248 aa16.93■□□□□ 0.3
HMGA1-206ENST00000478214 ASB7Q9H672 318 aa16.93■□□□□ 0.3
HMGA1-206ENST00000478214 CD320Q9NPF0 282 aa16.93■□□□□ 0.3
HMGA1-206ENST00000478214 DZANK1Q9NVP4 752 aa16.93■□□□□ 0.3
HMGA1-206ENST00000478214 CDH22Q9UJ99 828 aa16.93■□□□□ 0.3
HMGA1-206ENST00000478214 CIZ1Q9ULV3 898 aaPredicted RBP16.93■□□□□ 0.3
HMGA1-206ENST00000478214 NUB1Q9Y5A7 615 aa16.93■□□□□ 0.3
HMGA1-206ENST00000478214 C5orf42Q9H799 3197 aa16.92■□□□□ 0.3
HMGA1-206ENST00000478214 XPOTO43592 962 aaKnown RBP16.92■□□□□ 0.3
HMGA1-206ENST00000478214 GLUD1P00367 558 aa16.92■□□□□ 0.3
HMGA1-206ENST00000478214 LRPAP1P30533 357 aa16.92■□□□□ 0.3
HMGA1-206ENST00000478214 POU5F1Q01860 360 aaKnown RBP16.92■□□□□ 0.3
HMGA1-206ENST00000478214 CREMQ03060 361 aa16.92■□□□□ 0.3
HMGA1-206ENST00000478214 TMEM132DQ14C87 1099 aa16.92■□□□□ 0.3
HMGA1-206ENST00000478214 KMT5BQ4FZB7 885 aa16.92■□□□□ 0.3
HMGA1-206ENST00000478214 RARS2Q5T160 578 aaKnown RBP16.92■□□□□ 0.3
HMGA1-206ENST00000478214 SPATA1Q5VX52 437 aa16.92■□□□□ 0.3
HMGA1-206ENST00000478214 ARMCX5Q6P1M9 558 aa16.92■□□□□ 0.3
HMGA1-206ENST00000478214 NELFCDQ8IXH7 590 aa16.92■□□□□ 0.3
HMGA1-206ENST00000478214 BEST2Q8NFU1 509 aa16.92■□□□□ 0.3
HMGA1-206ENST00000478214 FEZF2Q8TBJ5 459 aa16.92■□□□□ 0.3
HMGA1-206ENST00000478214 NOC3LQ8WTT2 800 aaKnown RBP16.92■□□□□ 0.3
HMGA1-206ENST00000478214 SUSD6Q92537 303 aa16.92■□□□□ 0.3
HMGA1-206ENST00000478214 CLSTN3Q9BQT9 956 aa16.92■□□□□ 0.3
HMGA1-206ENST00000478214 EXOC1Q9NV70 894 aa16.92■□□□□ 0.3
HMGA1-206ENST00000478214 DERAQ9Y315 318 aa16.92■□□□□ 0.3
HMGA1-206ENST00000478214 GOLGA6L4A6NEF3 574 aa16.91■□□□□ 0.3
HMGA1-206ENST00000478214 TNFRSF10AO00220 468 aa16.91■□□□□ 0.3
HMGA1-206ENST00000478214 TULP1O00294 542 aaPredicted RBP16.91■□□□□ 0.3
HMGA1-206ENST00000478214 PPEF2O14830 753 aa16.91■□□□□ 0.3
HMGA1-206ENST00000478214 ADAM12O43184 909 aa16.91■□□□□ 0.3
HMGA1-206ENST00000478214 TGFB1I1O43294 461 aa16.91■□□□□ 0.3
HMGA1-206ENST00000478214 EXTL3O43909 919 aa16.91■□□□□ 0.3
HMGA1-206ENST00000478214 LDHAP00338 332 aaKnown RBP16.91■□□□□ 0.3
HMGA1-206ENST00000478214 MYL1P05976 194 aa16.91■□□□□ 0.3
HMGA1-206ENST00000478214 SPATA31D3P0C874 917 aa16.91■□□□□ 0.3
HMGA1-206ENST00000478214 MCM4P33991 863 aa16.91■□□□□ 0.3
HMGA1-206ENST00000478214 ANP32AP39687 249 aaKnown RBP16.91■□□□□ 0.3
HMGA1-206ENST00000478214 WNT7BP56706 349 aa16.91■□□□□ 0.3
HMGA1-206ENST00000478214 ZP2Q05996 745 aa16.91■□□□□ 0.3
HMGA1-206ENST00000478214 STK4Q13043 487 aa16.91■□□□□ 0.3
HMGA1-206ENST00000478214 SPATA31D4Q6ZUB0 917 aa16.91■□□□□ 0.3
HMGA1-206ENST00000478214 BRSK2Q8IWQ3 736 aa16.91■□□□□ 0.3
HMGA1-206ENST00000478214 ADHFE1Q8IWW8 467 aa16.91■□□□□ 0.3
HMGA1-206ENST00000478214 EFCAB13Q8IY85 973 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms