RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 CPXCR1Q8N123 301 aa19.28■□□□□ 0.68
CCM2-209ENST00000477605 UHMK1Q8TAS1 419 aaKnown RBP19.28■□□□□ 0.68
CCM2-209ENST00000477605 DDX27Q96GQ7 796 aaKnown RBP19.28■□□□□ 0.68
CCM2-209ENST00000477605 RMDN3Q96TC7 470 aa19.28■□□□□ 0.68
CCM2-209ENST00000477605 ELAC2Q9BQ52 826 aaKnown RBP19.28■□□□□ 0.68
CCM2-209ENST00000477605 HAUS2Q9NVX0 235 aa19.28■□□□□ 0.68
CCM2-209ENST00000477605 MROH7Q68CQ1 1323 aa19.28■□□□□ 0.68
CCM2-209ENST00000477605 MYPNQ86TC9 1320 aa19.28■□□□□ 0.68
CCM2-209ENST00000477605 ZBED4O75132 1171 aa19.27■□□□□ 0.68
CCM2-209ENST00000477605 PROSCO94903 275 aa19.27■□□□□ 0.68
CCM2-209ENST00000477605 MYCLP12524 364 aaPredicted RBP19.27■□□□□ 0.68
CCM2-209ENST00000477605 WDR44Q5JSH3 913 aa19.27■□□□□ 0.68
CCM2-209ENST00000477605 UBAP2Q5T6F2 1119 aaKnown RBP19.27■□□□□ 0.68
CCM2-209ENST00000477605 NLRX1Q86UT6 975 aa19.27■□□□□ 0.68
CCM2-209ENST00000477605 ZKSCAN4Q969J2 545 aaPredicted RBP19.27■□□□□ 0.68
CCM2-209ENST00000477605 NCAPGQ9BPX3 1015 aa19.27■□□□□ 0.68
CCM2-209ENST00000477605 SH2D3AQ9BRG2 576 aa19.27■□□□□ 0.68
CCM2-209ENST00000477605 TOPORSQ9NS56 1045 aaPredicted RBP19.27■□□□□ 0.68
CCM2-209ENST00000477605 LGALS13Q9UHV8 139 aa19.27■□□□□ 0.68
CCM2-209ENST00000477605 ANAPC5Q9UJX4 755 aa19.27■□□□□ 0.68
CCM2-209ENST00000477605 SNX3O60493 162 aa19.26■□□□□ 0.67
CCM2-209ENST00000477605 DGAT1O75907 488 aa19.26■□□□□ 0.67
CCM2-209ENST00000477605 RAD17O75943 681 aa19.26■□□□□ 0.67
CCM2-209ENST00000477605 OAS1P00973 400 aaKnown RBP19.26■□□□□ 0.67
CCM2-209ENST00000477605 POTEJP0CG39 1038 aa19.26■□□□□ 0.67
CCM2-209ENST00000477605 NSFP46459 744 aaKnown RBP19.26■□□□□ 0.67
CCM2-209ENST00000477605 MKRN3Q13064 507 aaKnown RBP19.26■□□□□ 0.67
CCM2-209ENST00000477605 ARHGEF16Q5VV41 709 aa19.26■□□□□ 0.67
CCM2-209ENST00000477605 GBP7Q8N8V2 638 aaPredicted RBP19.26■□□□□ 0.67
CCM2-209ENST00000477605 CCDC89Q8N998 374 aa19.26■□□□□ 0.67
CCM2-209ENST00000477605 ZBED3Q96IU2 234 aaPredicted RBP19.26■□□□□ 0.67
CCM2-209ENST00000477605 CEP170P1Q96L14 293 aa19.26■□□□□ 0.67
CCM2-209ENST00000477605 CCDC77Q9BR77 488 aa19.26■□□□□ 0.67
CCM2-209ENST00000477605 MRPL47Q9HD33 250 aaKnown RBP19.26■□□□□ 0.67
CCM2-209ENST00000477605 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.26■□□□□ 0.676e-6■■■■■ 48.1
CCM2-209ENST00000477605 PDLIM7Q9NR12 457 aa19.26■□□□□ 0.67
CCM2-209ENST00000477605 CHST7Q9NS84 486 aa19.26■□□□□ 0.67
CCM2-209ENST00000477605 CTDP1Q9Y5B0 961 aaPredicted RBP19.26■□□□□ 0.67
CCM2-209ENST00000477605 ACTL7BQ9Y614 415 aa19.26■□□□□ 0.67
CCM2-209ENST00000477605 EXTL3O43909 919 aa19.26■□□□□ 0.67
CCM2-209ENST00000477605 CCND2P30279 289 aa19.26■□□□□ 0.67
CCM2-209ENST00000477605 SLC8A1P32418 973 aa19.26■□□□□ 0.67
CCM2-209ENST00000477605 ITGA8P53708 1063 aa19.26■□□□□ 0.67
CCM2-209ENST00000477605 PSMD6Q15008 389 aa19.26■□□□□ 0.67
CCM2-209ENST00000477605 PREPLQ4J6C6 727 aaPredicted RBP19.26■□□□□ 0.67
CCM2-209ENST00000477605 RHOT1Q8IXI2 618 aa19.26■□□□□ 0.67
CCM2-209ENST00000477605 DYDC1Q8WWB3 177 aa19.26■□□□□ 0.67
CCM2-209ENST00000477605 BSNDQ8WZ55 320 aa19.26■□□□□ 0.67
CCM2-209ENST00000477605 SCLT1Q96NL6 688 aa19.26■□□□□ 0.67
CCM2-209ENST00000477605 DDX23Q9BUQ8 820 aaKnown RBP19.26■□□□□ 0.67
CCM2-209ENST00000477605 CCDC113Q9H0I3 377 aa19.26■□□□□ 0.67
CCM2-209ENST00000477605 NEU2Q9Y3R4 380 aa19.26■□□□□ 0.67
CCM2-209ENST00000477605 HNRNPDLO14979 420 aaKnown RBP19.25■□□□□ 0.67
CCM2-209ENST00000477605 C21orf2O43822 256 aa19.25■□□□□ 0.67
CCM2-209ENST00000477605 RRM1P23921 792 aa19.25■□□□□ 0.67
CCM2-209ENST00000477605 LMNB2Q03252 620 aa19.25■□□□□ 0.67
CCM2-209ENST00000477605 KLF1Q13351 362 aaPredicted RBP19.25■□□□□ 0.67
CCM2-209ENST00000477605 LONRF1Q17RB8 773 aa19.25■□□□□ 0.67
CCM2-209ENST00000477605 WLSQ5T9L3 541 aa19.25■□□□□ 0.67
CCM2-209ENST00000477605 VSIG10LQ86VR7 867 aa19.25■□□□□ 0.67
CCM2-209ENST00000477605 CDAN1Q8IWY9 1227 aa19.25■□□□□ 0.67
CCM2-209ENST00000477605 KATNAL2Q8IYT4 538 aa19.25■□□□□ 0.67
CCM2-209ENST00000477605 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.25■□□□□ 0.67
CCM2-209ENST00000477605 IFT74Q96LB3 600 aa19.25■□□□□ 0.67
CCM2-209ENST00000477605 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.25■□□□□ 0.67
CCM2-209ENST00000477605 USP15Q9Y4E8 981 aaPredicted RBP19.25■□□□□ 0.67
CCM2-209ENST00000477605 TMEM120BA0PK00 339 aa19.24■□□□□ 0.67
CCM2-209ENST00000477605 SUN1O94901 812 aa19.24■□□□□ 0.67
CCM2-209ENST00000477605 STBD1O95210 358 aa19.24■□□□□ 0.67
CCM2-209ENST00000477605 ACSL3O95573 720 aa19.24■□□□□ 0.67
CCM2-209ENST00000477605 ADCY8P40145 1251 aa19.24■□□□□ 0.67
CCM2-209ENST00000477605 RIPK1Q13546 671 aa19.24■□□□□ 0.67
CCM2-209ENST00000477605 SNX1Q13596 522 aa19.24■□□□□ 0.67
CCM2-209ENST00000477605 VSTM1Q6UX27 236 aa19.24■□□□□ 0.67
CCM2-209ENST00000477605 MON1BQ7L1V2 547 aa19.24■□□□□ 0.67
CCM2-209ENST00000477605 LARGE2Q8N3Y3 721 aa19.24■□□□□ 0.67
CCM2-209ENST00000477605 CCHCR1Q8TD31 782 aa19.24■□□□□ 0.67
CCM2-209ENST00000477605 CKAP2Q8WWK9 683 aa19.24■□□□□ 0.67
CCM2-209ENST00000477605 KIFC3Q9BVG8 833 aa19.24■□□□□ 0.67
CCM2-209ENST00000477605 ARHGAP28Q9P2N2 729 aa19.24■□□□□ 0.67
CCM2-209ENST00000477605 STYXL1Q9Y6J8 313 aa19.24■□□□□ 0.67
CCM2-209ENST00000477605 O00370 1275 aa19.24■□□□□ 0.67
CCM2-209ENST00000477605 THAP12O43422 761 aa19.24■□□□□ 0.67
CCM2-209ENST00000477605 PSAPP07602 524 aa19.24■□□□□ 0.67
CCM2-209ENST00000477605 CHKAP35790 457 aa19.24■□□□□ 0.67
CCM2-209ENST00000477605 CETN2P41208 172 aa19.24■□□□□ 0.67
CCM2-209ENST00000477605 STAT4Q14765 748 aa19.24■□□□□ 0.67
CCM2-209ENST00000477605 ZACNQ401N2 412 aa19.24■□□□□ 0.67
CCM2-209ENST00000477605 RIBC1Q8N443 379 aaPredicted RBP19.24■□□□□ 0.67
CCM2-209ENST00000477605 CCDC63Q8NA47 563 aa19.24■□□□□ 0.67
CCM2-209ENST00000477605 EXD1Q8NHP7 514 aa19.24■□□□□ 0.67
CCM2-209ENST00000477605 FAM213AQ9BRX8 229 aa19.24■□□□□ 0.67
CCM2-209ENST00000477605 GEMIN8Q9NWZ8 242 aaKnown RBP19.24■□□□□ 0.67
CCM2-209ENST00000477605 SCINQ9Y6U3 715 aa19.24■□□□□ 0.67
CCM2-209ENST00000477605 TESPA1A2RU30 521 aaPredicted RBP19.23■□□□□ 0.67
CCM2-209ENST00000477605 CDH16O75309 829 aa19.23■□□□□ 0.67
CCM2-209ENST00000477605 ABHD2P08910 425 aa19.23■□□□□ 0.67
CCM2-209ENST00000477605 ELF3P78545 371 aaPredicted RBP19.23■□□□□ 0.67
CCM2-209ENST00000477605 C9orf131Q5VYM1 1079 aa19.23■□□□□ 0.67
CCM2-209ENST00000477605 SMYD5Q6GMV2 418 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms