RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 CHMP2BQ9UQN3 213 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 IRS2Q9Y4H2 1338 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 ATP2A1O14983 1001 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 CHKAP35790 457 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 USP11P51784 963 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 RWDD2BP57060 319 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 PSMC5P62195 406 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 GPC5P78333 572 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 BAATQ14032 418 aaPredicted RBP5.3□□□□□ -1.56
CCDC39-204ENST00000476379 CEP55Q53EZ4 464 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 RHPN2Q8IUC4 686 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 NME8Q8N427 588 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 LNX1Q8TBB1 728 aaPredicted RBP5.3□□□□□ -1.56
CCDC39-204ENST00000476379 SLC35C1Q96A29 364 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 AGAP3Q96P47 875 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 MCEEQ96PE7 176 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 GMLQ99445 158 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 TARS2Q9BW92 718 aaKnown RBP5.3□□□□□ -1.56
CCDC39-204ENST00000476379 SH3GLB2Q9NR46 395 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 ADARB2Q9NS39 739 aaKnown RBP5.3□□□□□ -1.56
CCDC39-204ENST00000476379 KCNH7Q9NS40 1196 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 ARMCX1Q9P291 453 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 APEX2Q9UBZ4 518 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 ANAPC4Q9UJX5 808 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 VPS13AQ96RL7 3174 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 TAF1LQ8IZX4 1826 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 SUN1O94901 812 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 TMEM191BP0C7N4 346 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 PPP1R2P41236 205 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 ARSEP51690 589 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 YARSP54577 528 aaKnown RBP5.3□□□□□ -1.56
CCDC39-204ENST00000476379 TUBB4BP68371 445 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 GEN1Q17RS7 908 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 PHLDB3Q6NSJ2 640 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 EPM2AIP1Q7L775 607 aaPredicted RBP5.3□□□□□ -1.56
CCDC39-204ENST00000476379 MMGT1Q8N4V1 131 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 PDCD7Q8N8D1 485 aaKnown RBP5.3□□□□□ -1.56
CCDC39-204ENST00000476379 CCNYQ8ND76 341 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 OSBPL1AQ9BXW6 950 aa5.3□□□□□ -1.56
CCDC39-204ENST00000476379 NUCKS1Q9H1E3 243 aaKnown RBP5.3□□□□□ -1.56
CCDC39-204ENST00000476379 TCN1P20061 433 aaPredicted RBP5.29□□□□□ -1.56
CCDC39-204ENST00000476379 CYP2B6P20813 491 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 YWHABP31946 246 aaKnown RBP5.29□□□□□ -1.56
CCDC39-204ENST00000476379 PRPHP41219 470 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 SCTRP47872 440 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 RAD23BP54727 409 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 CNTN2Q02246 1040 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 SNRNP35Q16560 246 aaKnown RBP5.29□□□□□ -1.56
CCDC39-204ENST00000476379 GLRA4Q5JXX5 417 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 MEI1Q5TIA1 1274 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 HGSNATQ68CP4 663 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 SNRNP48Q6IEG0 339 aaKnown RBP5.29□□□□□ -1.56
CCDC39-204ENST00000476379 UBA3Q8TBC4 463 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 TRAPPC12Q8WVT3 735 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 PBKQ96KB5 322 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 ZNF512BQ96KM6 892 aaPredicted RBP5.29□□□□□ -1.56
CCDC39-204ENST00000476379 SMC6Q96SB8 1091 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 RBM15Q96T37 977 aaKnown RBP eCLIP5.29□□□□□ -1.56
CCDC39-204ENST00000476379 MSTO1Q9BUK6 570 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 ARHGAP39Q9C0H5 1083 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 CDC42EP4Q9H3Q1 356 aaKnown RBP5.29□□□□□ -1.56
CCDC39-204ENST00000476379 FAM49BQ9NUQ9 324 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 IL1RAPL1Q9NZN1 696 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 WDFY4Q6ZS81 3184 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 NUP188Q5SRE5 1749 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 MYH15Q9Y2K3 1946 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 LRRC10BA6NIK2 292 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 F8VZ95 297 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 OPHN1O60890 802 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 MT-CO1P00395 513 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 UBTFL6P0CB48 400 aaPredicted RBP5.29□□□□□ -1.56
CCDC39-204ENST00000476379 MFAP3P55082 362 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 BTKQ06187 659 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 BMPR2Q13873 1038 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 LIN9Q5TKA1 542 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 CST9Q5W186 159 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 NAIF1Q69YI7 327 aaPredicted RBP5.29□□□□□ -1.56
CCDC39-204ENST00000476379 PIP4K2CQ8TBX8 421 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 ATP8B4Q8TF62 1192 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 ERP44Q9BS26 406 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 TXNDC16Q9P2K2 825 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 PPARGC1AQ9UBK2 798 aaKnown RBP5.29□□□□□ -1.56
CCDC39-204ENST00000476379 SMCHD1A6NHR9 2005 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 LRP5O75197 1615 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 CNTNAP1P78357 1384 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 TUBGCP6Q96RT7 1819 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 CCL15-CCL14A0A0B4J2E2 113 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 K7ERI5 159 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 DNM1LO00429 736 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 SMIM24O75264 130 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 DGKIO75912 1065 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 FAM107AO95990 144 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 ZCCHC18P0CG32 403 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 NCF2P19878 526 aaPredicted RBP5.29□□□□□ -1.56
CCDC39-204ENST00000476379 SSTR1P30872 391 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 SERPINB6P35237 376 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 CCL15Q16663 113 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 SBK1Q52WX2 424 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 OR6B2Q6IFH4 312 aa5.29□□□□□ -1.56
CCDC39-204ENST00000476379 DNAJC24Q6P3W2 148 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms