RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ACSF2Q96CM8 615 aaPredicted RBP15.4■□□□□ 0.06
UPF3A-204ENST00000475218 KCNH6Q9H252 994 aa15.4■□□□□ 0.06
UPF3A-204ENST00000475218 EPS15L1Q9UBC2 864 aa15.4■□□□□ 0.06
UPF3A-204ENST00000475218 MORC2Q9Y6X9 1032 aaPredicted RBP15.4■□□□□ 0.06
UPF3A-204ENST00000475218 A0A0B4J269 797 aa15.39■□□□□ 0.05
UPF3A-204ENST00000475218 ANKRD63C9JTQ0 380 aa15.39■□□□□ 0.05
UPF3A-204ENST00000475218 K7ENM7 598 aa15.39■□□□□ 0.05
UPF3A-204ENST00000475218 TRAK2O60296 914 aa15.39■□□□□ 0.05
UPF3A-204ENST00000475218 FAM13AO94988 1023 aa15.39■□□□□ 0.05
UPF3A-204ENST00000475218 ADRB2P07550 413 aa15.39■□□□□ 0.05
UPF3A-204ENST00000475218 GTF2BQ00403 316 aa15.39■□□□□ 0.05
UPF3A-204ENST00000475218 NHLH1Q02575 133 aa15.39■□□□□ 0.05
UPF3A-204ENST00000475218 ENOX2Q16206 610 aaKnown RBP15.39■□□□□ 0.05
UPF3A-204ENST00000475218 ZC2HC1CQ53FD0 456 aaPredicted RBP15.39■□□□□ 0.05
UPF3A-204ENST00000475218 VARS2Q5ST30 1063 aaKnown RBP15.39■□□□□ 0.05
UPF3A-204ENST00000475218 GRASPQ7Z6J2 395 aaPredicted RBP15.39■□□□□ 0.05
UPF3A-204ENST00000475218 MYMKA6NI61 221 aa15.39■□□□□ 0.05
UPF3A-204ENST00000475218 H0YCG3 227 aa15.39■□□□□ 0.05
UPF3A-204ENST00000475218 NARSO43776 548 aaKnown RBP15.39■□□□□ 0.05
UPF3A-204ENST00000475218 PPP1R37O75864 691 aa15.39■□□□□ 0.05
UPF3A-204ENST00000475218 CLTAP09496 248 aa15.39■□□□□ 0.05
UPF3A-204ENST00000475218 HOXA9P31269 272 aa15.39■□□□□ 0.05
UPF3A-204ENST00000475218 RPL9P32969 192 aaKnown RBP15.39■□□□□ 0.05
UPF3A-204ENST00000475218 GUCY2FP51841 1108 aa15.39■□□□□ 0.05
UPF3A-204ENST00000475218 SLC39A14Q15043 492 aa15.39■□□□□ 0.05
UPF3A-204ENST00000475218 AXDND1Q5T1B0 1012 aaPredicted RBP15.39■□□□□ 0.05
UPF3A-204ENST00000475218 SLC8B1Q6J4K2 584 aa15.39■□□□□ 0.05
UPF3A-204ENST00000475218 PDXDC1Q6P996 788 aa15.39■□□□□ 0.05
UPF3A-204ENST00000475218 ELMSAN1Q6PJG2 1045 aa15.39■□□□□ 0.05
UPF3A-204ENST00000475218 POTEHQ6S545 545 aa15.39■□□□□ 0.05
UPF3A-204ENST00000475218 USP34Q70CQ2 3546 aa15.39■□□□□ 0.05
UPF3A-204ENST00000475218 MAP4K3Q8IVH8 894 aa15.39■□□□□ 0.05
UPF3A-204ENST00000475218 ST13P5Q8NFI4 369 aaPredicted RBP15.39■□□□□ 0.05
UPF3A-204ENST00000475218 SLC7A14Q8TBB6 771 aa15.39■□□□□ 0.05
UPF3A-204ENST00000475218 DNAJC19Q96DA6 116 aa15.39■□□□□ 0.05
UPF3A-204ENST00000475218 SUSD3Q96L08 255 aa15.39■□□□□ 0.05
UPF3A-204ENST00000475218 STRA6Q9BX79 667 aa15.39■□□□□ 0.05
UPF3A-204ENST00000475218 LACTBL1A8MY62 500 aa15.38■□□□□ 0.05
UPF3A-204ENST00000475218 HNRNPDLO14979 420 aaKnown RBP15.38■□□□□ 0.05
UPF3A-204ENST00000475218 CCL16O15467 120 aa15.38■□□□□ 0.05
UPF3A-204ENST00000475218 STX6O43752 255 aa15.38■□□□□ 0.05
UPF3A-204ENST00000475218 HNRNPA1P09651 372 aaKnown RBP eCLIP15.38■□□□□ 0.05
UPF3A-204ENST00000475218 AVPR2P30518 371 aa15.38■□□□□ 0.05
UPF3A-204ENST00000475218 GBP2P32456 591 aaPredicted RBP15.38■□□□□ 0.05
UPF3A-204ENST00000475218 LIG4P49917 911 aa15.38■□□□□ 0.05
UPF3A-204ENST00000475218 ROR1Q01973 937 aa15.38■□□□□ 0.05
UPF3A-204ENST00000475218 TCF15Q12870 199 aa15.38■□□□□ 0.05
UPF3A-204ENST00000475218 TDGQ13569 410 aa15.38■□□□□ 0.05
UPF3A-204ENST00000475218 ANKS3Q6ZW76 656 aa15.38■□□□□ 0.05
UPF3A-204ENST00000475218 GET4Q7L5D6 327 aaPredicted RBP15.38■□□□□ 0.05
UPF3A-204ENST00000475218 BICD1Q96G01 975 aa15.38■□□□□ 0.05
UPF3A-204ENST00000475218 ST6GALNAC4Q9H4F1 302 aa15.38■□□□□ 0.05
UPF3A-204ENST00000475218 ZHX3Q9H4I2 956 aa15.38■□□□□ 0.05
UPF3A-204ENST00000475218 PLEKHA5Q9HAU0 1116 aa15.38■□□□□ 0.05
UPF3A-204ENST00000475218 PIDD1Q9HB75 910 aa15.38■□□□□ 0.05
UPF3A-204ENST00000475218 HCFC1R1Q9NWW0 138 aa15.38■□□□□ 0.05
UPF3A-204ENST00000475218 STK17AQ9UEE5 414 aa15.38■□□□□ 0.05
UPF3A-204ENST00000475218 DUSP12Q9UNI6 340 aa15.38■□□□□ 0.05
UPF3A-204ENST00000475218 PIEZO1Q92508 2521 aa15.38■□□□□ 0.05
UPF3A-204ENST00000475218 WDR27A2RRH5 827 aa15.37■□□□□ 0.05
UPF3A-204ENST00000475218 ANHXE9PGG2 379 aa15.37■□□□□ 0.05
UPF3A-204ENST00000475218 PPEF2O14830 753 aa15.37■□□□□ 0.05
UPF3A-204ENST00000475218 OGTO15294 1046 aa15.37■□□□□ 0.05
UPF3A-204ENST00000475218 TRAPPC3O43617 180 aa15.37■□□□□ 0.05
UPF3A-204ENST00000475218 ABLIM3O94929 683 aa15.37■□□□□ 0.05
UPF3A-204ENST00000475218 LAMP2P13473 410 aa15.37■□□□□ 0.05
UPF3A-204ENST00000475218 LRPAP1P30533 357 aa15.37■□□□□ 0.05
UPF3A-204ENST00000475218 NASPP49321 788 aaPredicted RBP15.37■□□□□ 0.05
UPF3A-204ENST00000475218 PPM1LQ5SGD2 360 aa15.37■□□□□ 0.05
UPF3A-204ENST00000475218 DYMQ7RTS9 669 aa15.37■□□□□ 0.05
UPF3A-204ENST00000475218 SFR1Q86XK3 245 aa15.37■□□□□ 0.05
UPF3A-204ENST00000475218 SUGP1Q8IWZ8 645 aaKnown RBP15.37■□□□□ 0.05
UPF3A-204ENST00000475218 TMEM105Q8N8V8 129 aa15.37■□□□□ 0.05
UPF3A-204ENST00000475218 RASSF8Q8NHQ8 419 aa15.37■□□□□ 0.05
UPF3A-204ENST00000475218 SNX21Q969T3 373 aa15.37■□□□□ 0.05
UPF3A-204ENST00000475218 PHOX2BQ99453 314 aa15.37■□□□□ 0.05
UPF3A-204ENST00000475218 CPSF3Q9UKF6 684 aaKnown RBP15.37■□□□□ 0.05
UPF3A-204ENST00000475218 NRG2O14511 850 aaPredicted RBP15.36■□□□□ 0.05
UPF3A-204ENST00000475218 SYN3O14994 580 aa15.36■□□□□ 0.05
UPF3A-204ENST00000475218 KRT18P05783 430 aaKnown RBP15.36■□□□□ 0.05
UPF3A-204ENST00000475218 POU2F2P09086 479 aa15.36■□□□□ 0.05
UPF3A-204ENST00000475218 NPR3P17342 541 aa15.36■□□□□ 0.05
UPF3A-204ENST00000475218 AARSP49588 968 aaKnown RBP eCLIP15.36■□□□□ 0.05
UPF3A-204ENST00000475218 KCNA1Q09470 495 aa15.36■□□□□ 0.05
UPF3A-204ENST00000475218 HTR4Q13639 388 aa15.36■□□□□ 0.05
UPF3A-204ENST00000475218 LIN9Q5TKA1 542 aa15.36■□□□□ 0.05
UPF3A-204ENST00000475218 CWF19L1Q69YN2 538 aaKnown RBP15.36■□□□□ 0.05
UPF3A-204ENST00000475218 SLC44A3Q8N4M1 653 aa15.36■□□□□ 0.05
UPF3A-204ENST00000475218 ITFG1Q8TB96 612 aa15.36■□□□□ 0.05
UPF3A-204ENST00000475218 DDX12PQ92771 950 aa15.36■□□□□ 0.05
UPF3A-204ENST00000475218 STAMQ92783 540 aa15.36■□□□□ 0.05
UPF3A-204ENST00000475218 RPP25Q9BUL9 199 aaKnown RBP15.36■□□□□ 0.05
UPF3A-204ENST00000475218 FGFBP2Q9BYJ0 223 aa15.36■□□□□ 0.05
UPF3A-204ENST00000475218 IGSF9Q9P2J2 1179 aa15.36■□□□□ 0.05
UPF3A-204ENST00000475218 DNMT3BQ9UBC3 853 aaKnown RBP15.36■□□□□ 0.05
UPF3A-204ENST00000475218 FBXL5Q9UKA1 691 aa15.36■□□□□ 0.05
UPF3A-204ENST00000475218 STYXL1Q9Y6J8 313 aa15.36■□□□□ 0.05
UPF3A-204ENST00000475218 TBCAO75347 108 aaKnown RBP15.36■□□□□ 0.05
UPF3A-204ENST00000475218 SEC24AO95486 1093 aa15.36■□□□□ 0.05
UPF3A-204ENST00000475218 SCP2P22307 547 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms