RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 ANK1P16157 1881 aa20.27■□□□□ 0.84
COL7A1-209ENST00000474432 H0YCG3 227 aa20.27■□□□□ 0.84
COL7A1-209ENST00000474432 TRAPPC3O43617 180 aa20.27■□□□□ 0.84
COL7A1-209ENST00000474432 TRAK2O60296 914 aa20.27■□□□□ 0.84
COL7A1-209ENST00000474432 ADRB2P07550 413 aa20.27■□□□□ 0.84
COL7A1-209ENST00000474432 HNRNPA1P09651 372 aaKnown RBP eCLIP20.27■□□□□ 0.84
COL7A1-209ENST00000474432 NMT1P30419 496 aaKnown RBP20.27■□□□□ 0.84
COL7A1-209ENST00000474432 HOXA9P31269 272 aa20.27■□□□□ 0.84
COL7A1-209ENST00000474432 GBP2P32456 591 aaPredicted RBP20.27■□□□□ 0.84
COL7A1-209ENST00000474432 RPL9P32969 192 aaKnown RBP20.27■□□□□ 0.84
COL7A1-209ENST00000474432 SPAG1Q07617 926 aa20.27■□□□□ 0.84
COL7A1-209ENST00000474432 AXDND1Q5T1B0 1012 aaPredicted RBP20.27■□□□□ 0.84
COL7A1-209ENST00000474432 SLC8B1Q6J4K2 584 aa20.27■□□□□ 0.84
COL7A1-209ENST00000474432 ANKS3Q6ZW76 656 aa20.27■□□□□ 0.84
COL7A1-209ENST00000474432 GRASPQ7Z6J2 395 aaPredicted RBP20.27■□□□□ 0.84
COL7A1-209ENST00000474432 STAMQ92783 540 aa20.27■□□□□ 0.84
COL7A1-209ENST00000474432 USP28Q96RU2 1077 aa20.27■□□□□ 0.84
COL7A1-209ENST00000474432 FOXD4L1Q9NU39 408 aa20.27■□□□□ 0.84
COL7A1-209ENST00000474432 IGSF9Q9P2J2 1179 aa20.27■□□□□ 0.84
COL7A1-209ENST00000474432 DUSP12Q9UNI6 340 aa20.27■□□□□ 0.84
COL7A1-209ENST00000474432 MYH15Q9Y2K3 1946 aa20.26■□□□□ 0.83
COL7A1-209ENST00000474432 NARSO43776 548 aaKnown RBP20.26■□□□□ 0.83
COL7A1-209ENST00000474432 FAM13AO94988 1023 aa20.26■□□□□ 0.83
COL7A1-209ENST00000474432 CLTAP09496 248 aa20.26■□□□□ 0.83
COL7A1-209ENST00000474432 LAMP2P13473 410 aa20.26■□□□□ 0.83
COL7A1-209ENST00000474432 GTF2BQ00403 316 aa20.26■□□□□ 0.83
COL7A1-209ENST00000474432 VARS2Q5ST30 1063 aaKnown RBP20.26■□□□□ 0.83
COL7A1-209ENST00000474432 SLC7A14Q8TBB6 771 aa20.26■□□□□ 0.83
COL7A1-209ENST00000474432 SUSD3Q96L08 255 aa20.26■□□□□ 0.83
COL7A1-209ENST00000474432 PLEKHA5Q9HAU0 1116 aa20.26■□□□□ 0.83
COL7A1-209ENST00000474432 MORC2Q9Y6X9 1032 aaPredicted RBP20.26■□□□□ 0.83
COL7A1-209ENST00000474432 A0A0B4J269 797 aa20.25■□□□□ 0.83
COL7A1-209ENST00000474432 ANKRD63C9JTQ0 380 aa20.25■□□□□ 0.83
COL7A1-209ENST00000474432 ANHXE9PGG2 379 aa20.25■□□□□ 0.83
COL7A1-209ENST00000474432 K7ELQ4 463 aaPredicted RBP20.25■□□□□ 0.83
COL7A1-209ENST00000474432 K7ENM7 598 aa20.25■□□□□ 0.83
COL7A1-209ENST00000474432 SYN3O14994 580 aa20.25■□□□□ 0.83
COL7A1-209ENST00000474432 CCL16O15467 120 aa20.25■□□□□ 0.83
COL7A1-209ENST00000474432 ABLIM3O94929 683 aa20.25■□□□□ 0.83
COL7A1-209ENST00000474432 POU2F2P09086 479 aa20.25■□□□□ 0.83
COL7A1-209ENST00000474432 NPR3P17342 541 aa20.25■□□□□ 0.83
COL7A1-209ENST00000474432 ROR1Q01973 937 aa20.25■□□□□ 0.83
COL7A1-209ENST00000474432 CEBPZQ03701 1054 aaKnown RBP20.25■□□□□ 0.83
COL7A1-209ENST00000474432 ENOX2Q16206 610 aaKnown RBP20.25■□□□□ 0.83
COL7A1-209ENST00000474432 ZC2HC1CQ53FD0 456 aaPredicted RBP20.25■□□□□ 0.83
COL7A1-209ENST00000474432 PPM1LQ5SGD2 360 aa20.25■□□□□ 0.83
COL7A1-209ENST00000474432 LIN9Q5TKA1 542 aa20.25■□□□□ 0.83
COL7A1-209ENST00000474432 MAP4K3Q8IVH8 894 aa20.25■□□□□ 0.83
COL7A1-209ENST00000474432 SLC44A3Q8N4M1 653 aa20.25■□□□□ 0.83
COL7A1-209ENST00000474432 TMEM105Q8N8V8 129 aa20.25■□□□□ 0.83
COL7A1-209ENST00000474432 IKZF4Q9H2S9 585 aa20.25■□□□□ 0.83
COL7A1-209ENST00000474432 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.25■□□□□ 0.83
COL7A1-209ENST00000474432 A0A087X0B3 334 aa20.24■□□□□ 0.83
COL7A1-209ENST00000474432 WDR27A2RRH5 827 aa20.24■□□□□ 0.83
COL7A1-209ENST00000474432 LACTBL1A8MY62 500 aa20.24■□□□□ 0.83
COL7A1-209ENST00000474432 TISP43B9A030 160 aa20.24■□□□□ 0.83
COL7A1-209ENST00000474432 SCP2P22307 547 aa20.24■□□□□ 0.83
COL7A1-209ENST00000474432 LRPAP1P30533 357 aa20.24■□□□□ 0.83
COL7A1-209ENST00000474432 LIG4P49917 911 aa20.24■□□□□ 0.83
COL7A1-209ENST00000474432 SLC39A14Q15043 492 aa20.24■□□□□ 0.83
COL7A1-209ENST00000474432 UVSSAQ2YD98 709 aa20.24■□□□□ 0.83
COL7A1-209ENST00000474432 POTEHQ6S545 545 aa20.24■□□□□ 0.83
COL7A1-209ENST00000474432 GET4Q7L5D6 327 aaPredicted RBP20.24■□□□□ 0.83
COL7A1-209ENST00000474432 DNAJC19Q96DA6 116 aa20.24■□□□□ 0.83
COL7A1-209ENST00000474432 BICD1Q96G01 975 aa20.24■□□□□ 0.83
COL7A1-209ENST00000474432 PHOX2BQ99453 314 aa20.24■□□□□ 0.83
COL7A1-209ENST00000474432 STRA6Q9BX79 667 aa20.24■□□□□ 0.83
COL7A1-209ENST00000474432 ST6GALNAC4Q9H4F1 302 aa20.24■□□□□ 0.83
COL7A1-209ENST00000474432 HCFC1R1Q9NWW0 138 aa20.24■□□□□ 0.83
COL7A1-209ENST00000474432 DNMT3BQ9UBC3 853 aaKnown RBP20.24■□□□□ 0.83
COL7A1-209ENST00000474432 MYMKA6NI61 221 aa20.23■□□□□ 0.83
COL7A1-209ENST00000474432 HNRNPDLO14979 420 aaKnown RBP20.23■□□□□ 0.83
COL7A1-209ENST00000474432 OGTO15294 1046 aa20.23■□□□□ 0.83
COL7A1-209ENST00000474432 PPP1R37O75864 691 aa20.23■□□□□ 0.83
COL7A1-209ENST00000474432 KRT18P05783 430 aaKnown RBP20.23■□□□□ 0.83
COL7A1-209ENST00000474432 FSHRP23945 695 aa20.23■□□□□ 0.83
COL7A1-209ENST00000474432 AARSP49588 968 aaKnown RBP eCLIP20.23■□□□□ 0.83
COL7A1-209ENST00000474432 GUCY2FP51841 1108 aa20.23■□□□□ 0.83
COL7A1-209ENST00000474432 HTR4Q13639 388 aa20.23■□□□□ 0.83
COL7A1-209ENST00000474432 CWF19L1Q69YN2 538 aaKnown RBP20.23■□□□□ 0.83
COL7A1-209ENST00000474432 ST13P5Q8NFI4 369 aaPredicted RBP20.23■□□□□ 0.83
COL7A1-209ENST00000474432 RASSF8Q8NHQ8 419 aa20.23■□□□□ 0.83
COL7A1-209ENST00000474432 ZNF461Q8TAF7 563 aa20.23■□□□□ 0.83
COL7A1-209ENST00000474432 ITFG1Q8TB96 612 aa20.23■□□□□ 0.83
COL7A1-209ENST00000474432 RPP25Q9BUL9 199 aaKnown RBP20.23■□□□□ 0.83
COL7A1-209ENST00000474432 ZHX3Q9H4I2 956 aa20.23■□□□□ 0.83
COL7A1-209ENST00000474432 STK17AQ9UEE5 414 aa20.23■□□□□ 0.83
COL7A1-209ENST00000474432 FBXL5Q9UKA1 691 aa20.23■□□□□ 0.83
COL7A1-209ENST00000474432 CPSF3Q9UKF6 684 aaKnown RBP20.23■□□□□ 0.83
COL7A1-209ENST00000474432 STYXL1Q9Y6J8 313 aa20.23■□□□□ 0.83
COL7A1-209ENST00000474432 STX6O43752 255 aa20.22■□□□□ 0.83
COL7A1-209ENST00000474432 SEC24AO95486 1093 aa20.22■□□□□ 0.83
COL7A1-209ENST00000474432 CYP3A5P20815 502 aa20.22■□□□□ 0.83
COL7A1-209ENST00000474432 MATR3P43243 847 aaKnown RBP eCLIP20.22■□□□□ 0.83
COL7A1-209ENST00000474432 RTL10Q7L3V2 364 aa20.22■□□□□ 0.83
COL7A1-209ENST00000474432 DYMQ7RTS9 669 aa20.22■□□□□ 0.83
COL7A1-209ENST00000474432 ZNF720Q7Z2F6 126 aa20.22■□□□□ 0.83
COL7A1-209ENST00000474432 ALYREFQ86V81 257 aaKnown RBP20.22■□□□□ 0.83
COL7A1-209ENST00000474432 SFR1Q86XK3 245 aa20.22■□□□□ 0.83
COL7A1-209ENST00000474432 DDX12PQ92771 950 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms