RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 IREB2P48200 963 aaKnown RBP9.42□□□□□ -0.9
COL6A3-210ENST00000473258 GDI2P50395 445 aaKnown RBP9.42□□□□□ -0.9
COL6A3-210ENST00000473258 TPTEP56180 551 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 ADAM9Q13443 819 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 PPP2R5BQ15173 497 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 ZSWIM7Q19AV6 140 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 ZNF589Q86UQ0 364 aaPredicted RBP9.42□□□□□ -0.9
COL6A3-210ENST00000473258 MB21D1Q8N884 522 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 TSPAN14Q8NG11 270 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 IRX2Q9BZI1 471 aaPredicted RBP9.42□□□□□ -0.9
COL6A3-210ENST00000473258 PIK3R4Q99570 1358 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 ZSCAN5BA6NJL1 495 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 ZNF263O14978 683 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 RAD23AP54725 363 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 DENND5AQ6IQ26 1287 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 COL23A1Q86Y22 540 aaPredicted RBP9.42□□□□□ -0.9
COL6A3-210ENST00000473258 KRT78Q8N1N4 520 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 PDCD6IPQ8WUM4 868 aaKnown RBP9.42□□□□□ -0.9
COL6A3-210ENST00000473258 SAV1Q9H4B6 383 aaPredicted RBP9.42□□□□□ -0.9
COL6A3-210ENST00000473258 SERHL2Q9H4I8 314 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 SERHLQ9NQF3 203 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 ZNF277Q9NRM2 450 aaPredicted RBP9.42□□□□□ -0.9
COL6A3-210ENST00000473258 AMACRQ9UHK6 382 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 CLIC4Q9Y696 253 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 FAM83GA6ND36 823 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 MYCLP1P12525 358 aaPredicted RBP9.42□□□□□ -0.9
COL6A3-210ENST00000473258 SOX11P35716 441 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 POU5F1BQ06416 359 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 REXO1Q8N1G1 1221 aaKnown RBP9.42□□□□□ -0.9
COL6A3-210ENST00000473258 SVOPQ8N4V2 548 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 SPATA5Q8NB90 893 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 ACMSDQ8TDX5 336 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 PROX1Q92786 737 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 EEF2KMTQ96G04 330 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 TTYH1Q9H313 450 aaPredicted RBP9.42□□□□□ -0.9
COL6A3-210ENST00000473258 THAP9Q9H5L6 903 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 STARD7Q9NQZ5 370 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 MBIPQ9NS73 344 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 SLC8A2Q9UPR5 921 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 DNM3Q9UQ16 869 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 DISP3Q9P2K9 1392 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 ZNF879B4DU55 563 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 TPST1O60507 370 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 CCNT1O60563 726 aaKnown RBP9.42□□□□□ -0.9
COL6A3-210ENST00000473258 ASMTLO95671 621 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 CPA3P15088 417 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 GP5P40197 560 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 ATP12AP54707 1039 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 SUZ12Q15022 739 aaKnown RBP9.42□□□□□ -0.9
COL6A3-210ENST00000473258 FASTKD1Q53R41 847 aaKnown RBP9.42□□□□□ -0.9
COL6A3-210ENST00000473258 SLC9C2Q5TAH2 1124 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 ANKS6Q68DC2 871 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 DARS2Q6PI48 645 aaKnown RBP9.42□□□□□ -0.9
COL6A3-210ENST00000473258 CYP4V2Q6ZWL3 525 aaPredicted RBP9.42□□□□□ -0.9
COL6A3-210ENST00000473258 MMGT1Q8N4V1 131 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 UXS1Q8NBZ7 420 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 P2RX5Q93086 422 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 WNK4Q96J92 1243 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 SPOCK3Q9BQ16 436 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 POLR3BQ9NW08 1133 aaPredicted RBP9.42□□□□□ -0.9
COL6A3-210ENST00000473258 MARCOQ9UEW3 520 aaPredicted RBP9.42□□□□□ -0.9
COL6A3-210ENST00000473258 ZC3H7BQ9UGR2 993 aaKnown RBP9.42□□□□□ -0.9
COL6A3-210ENST00000473258 PHTF1Q9UMS5 762 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 TMEM5Q9Y2B1 443 aa9.42□□□□□ -0.9
COL6A3-210ENST00000473258 NCK2O43639 380 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 TRMUO75648 421 aaKnown RBP9.41□□□□□ -0.9
COL6A3-210ENST00000473258 PMLP29590 882 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 SOX5P35711 763 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 BAG6P46379 1132 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 BPIFB4P59827 614 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 SPAG16Q8N0X2 631 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 AMER2Q8N7J2 671 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 OR7A2PQ8NGA2 310 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 ZNF274Q96GC6 653 aaPredicted RBP9.41□□□□□ -0.9
COL6A3-210ENST00000473258 AS3MTQ9HBK9 375 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 V9GY48 417 aaPredicted RBP9.41□□□□□ -0.9
COL6A3-210ENST00000473258 SMCO2A6NFE2 343 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 CLOCKO15516 846 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 ZNF23P17027 643 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 GNL1P36915 607 aaPredicted RBP9.41□□□□□ -0.9
COL6A3-210ENST00000473258 NCKAP1LP55160 1127 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 ZNF200P98182 395 aaPredicted RBP9.41□□□□□ -0.9
COL6A3-210ENST00000473258 PDK3Q15120 406 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 LONRF1Q17RB8 773 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 NUP93Q8N1F7 819 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 DIS3LQ8TF46 1054 aaKnown RBP9.41□□□□□ -0.9
COL6A3-210ENST00000473258 FAM172AQ8WUF8 416 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 KIFC1Q9BW19 673 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 NUAK2Q9H093 628 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 SP140LQ9H930 580 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 FGD6Q6ZV73 1430 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 FYCO1Q9BQS8 1478 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 CCNA2P20248 432 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 SP100P23497 879 aaPredicted RBP9.41□□□□□ -0.9
COL6A3-210ENST00000473258 GJA9P57773 515 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 GNG2P59768 71 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 TOP3AQ13472 1001 aaPredicted RBP9.41□□□□□ -0.9
COL6A3-210ENST00000473258 KRT24Q2M2I5 525 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 PPM1KQ8N3J5 372 aa9.41□□□□□ -0.9
COL6A3-210ENST00000473258 MYCT1Q8N699 235 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms