RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 VAMP7P51809 220 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 SLC10A5Q5PT55 438 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 DDIASQ8IXT1 998 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 BEST2Q8NFU1 509 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 SENP7Q9BQF6 1050 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 SLC13A1Q9BZW2 595 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 NGRNQ9NPE2 291 aaKnown RBP13.95□□□□□ -0.18
COL6A3-209ENST00000472056 PI4KBQ9UBF8 816 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 FAM153AQ9UHL3 310 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 DLGAP3O95886 979 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 COPB2P35606 906 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 PRPF39Q86UA1 669 aaKnown RBP13.95□□□□□ -0.18
COL6A3-209ENST00000472056 BTBD7Q9P203 1132 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.95□□□□□ -0.18
COL6A3-209ENST00000472056 LIMA1Q9UHB6 759 aaKnown RBP13.95□□□□□ -0.18
COL6A3-209ENST00000472056 FARP1Q9Y4F1 1045 aaPredicted RBP13.95□□□□□ -0.18
COL6A3-209ENST00000472056 NCKAP5LQ9HCH0 1330 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 UBAP1LF5GYI3 381 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 P4HA2O15460 535 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 TRIM13O60858 407 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 PHKA2P46019 1235 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 RNF219Q5W0B1 726 aaPredicted RBP13.95□□□□□ -0.18
COL6A3-209ENST00000472056 RYBPQ8N488 228 aaPredicted RBP13.95□□□□□ -0.18
COL6A3-209ENST00000472056 B4GALNT2Q8NHY0 566 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 SDR42E1Q8WUS8 393 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 WDR60Q8WVS4 1066 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 MANSC1Q9H8J5 431 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 PAK5Q9P286 719 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 KATNA1O75449 491 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 ACTR2P61160 394 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 KCNA1Q09470 495 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 NLRP4Q96MN2 994 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 CHD4Q14839 1912 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 KRT76Q01546 638 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 KCTD2Q14681 263 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 CHRNA2Q15822 529 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 KRT24Q2M2I5 525 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 USP13Q92995 863 aaPredicted RBP13.95□□□□□ -0.18
COL6A3-209ENST00000472056 PRCPP42785 496 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 EIF2B5Q13144 721 aaKnown RBP13.95□□□□□ -0.18
COL6A3-209ENST00000472056 DCTN2Q13561 401 aaKnown RBP13.95□□□□□ -0.18
COL6A3-209ENST00000472056 FBXO31Q5XUX0 539 aaPredicted RBP13.95□□□□□ -0.18
COL6A3-209ENST00000472056 TMC5Q6UXY8 1006 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 C19orf18Q8NEA5 215 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 TINF2Q9BSI4 451 aa13.95□□□□□ -0.18
COL6A3-209ENST00000472056 SRP72O76094 671 aaKnown RBP13.94□□□□□ -0.18
COL6A3-209ENST00000472056 MED26O95402 600 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 FTLP02792 175 aaPredicted RBP13.94□□□□□ -0.18
COL6A3-209ENST00000472056 POLBP06746 335 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 OR6B2Q6IFH4 312 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 RAD54LQ92698 747 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 LRRC39Q96DD0 335 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 ERP44Q9BS26 406 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 CLEC11AQ9Y240 323 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 CNTRLQ7Z7A1 2325 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 USP1O94782 785 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 PLA2G4AP47712 749 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 ATP2C1P98194 919 aaPredicted RBP13.94□□□□□ -0.18
COL6A3-209ENST00000472056 CDK17Q00537 523 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 RCN1Q15293 331 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 RBBP7Q16576 425 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 MMTAG2Q9BU76 263 aaKnown RBP13.94□□□□□ -0.18
COL6A3-209ENST00000472056 SUGT1Q9Y2Z0 365 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 GHRP10912 638 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 NQO1P15559 274 aaKnown RBP13.94□□□□□ -0.18
COL6A3-209ENST00000472056 PRKAA2P54646 552 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 PTPN12Q05209 780 aaKnown RBP13.94□□□□□ -0.18
COL6A3-209ENST00000472056 ALX1Q15699 326 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 LRRC47Q8N1G4 583 aaKnown RBP13.94□□□□□ -0.18
COL6A3-209ENST00000472056 CCSER1Q9C0I3 900 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 CCNL1Q9UK58 526 aaPredicted RBP13.94□□□□□ -0.18
COL6A3-209ENST00000472056 MXD4Q14582 209 aaPredicted RBP13.94□□□□□ -0.18
COL6A3-209ENST00000472056 PTGISQ16647 500 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 TIMM50Q3ZCQ8 353 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 SYDE2Q5VT97 1194 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 PDCD6IPQ8WUM4 868 aaKnown RBP13.94□□□□□ -0.18
COL6A3-209ENST00000472056 TTC26A0AVF1 554 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 RGS2P41220 211 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 ALDH18A1P54886 795 aaKnown RBP13.94□□□□□ -0.18
COL6A3-209ENST00000472056 BNC1Q01954 994 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 UGT3A1Q6NUS8 523 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 LZTS1Q9Y250 596 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 ATP10AO60312 1499 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 hCG_2014768A0A024R1R8 64 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 S100A9P06702 114 aaKnown RBP13.94□□□□□ -0.18
COL6A3-209ENST00000472056 STAT3P40763 770 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 RGS4P49798 205 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 MAPK6Q16659 721 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 PPP4R4Q6NUP7 873 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 NRDE2Q9H7Z3 1164 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 EFCAB1Q9HAE3 211 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 UBAP1Q9NZ09 502 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 RSL24D1Q9UHA3 163 aaKnown RBP13.94□□□□□ -0.18
COL6A3-209ENST00000472056 EFCAB6Q5THR3 1501 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 ERVV-1B6SEH8 477 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 VSNL1P62760 191 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 WASHC2DQ5SRD0 308 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 TMEM161AQ9NX61 479 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 HEY1Q9Y5J3 304 aa13.94□□□□□ -0.18
COL6A3-209ENST00000472056 IGF2BP3O00425 579 aaKnown RBP eCLIP13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms