RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 PDE6CP51160 858 aa10.09□□□□□ -0.79
VPS52-216ENST00000471309 TFAMQ00059 246 aaKnown RBP10.09□□□□□ -0.79
VPS52-216ENST00000471309 PTGISQ16647 500 aa10.09□□□□□ -0.79
VPS52-216ENST00000471309 SGSM1Q2NKQ1 1148 aa10.09□□□□□ -0.79
VPS52-216ENST00000471309 SLC10A6Q3KNW5 377 aa10.09□□□□□ -0.79
VPS52-216ENST00000471309 LHX8Q68G74 356 aa10.09□□□□□ -0.79
VPS52-216ENST00000471309 JADE1Q6IE81 842 aa10.09□□□□□ -0.79
VPS52-216ENST00000471309 LNX1Q8TBB1 728 aaPredicted RBP10.09□□□□□ -0.79
VPS52-216ENST00000471309 EPS8L1Q8TE68 723 aa10.09□□□□□ -0.79
VPS52-216ENST00000471309 TATDN2Q93075 761 aa10.09□□□□□ -0.79
VPS52-216ENST00000471309 FAXDC2Q96IV6 333 aa10.09□□□□□ -0.79
VPS52-216ENST00000471309 ACAP3Q96P50 834 aa10.09□□□□□ -0.79
VPS52-216ENST00000471309 AGPAT1Q99943 283 aa10.09□□□□□ -0.79
VPS52-216ENST00000471309 IRX2Q9BZI1 471 aaPredicted RBP10.09□□□□□ -0.79
VPS52-216ENST00000471309 SENP6Q9GZR1 1112 aaPredicted RBP10.09□□□□□ -0.79
VPS52-216ENST00000471309 APOBEC3GQ9HC16 384 aaKnown RBP10.09□□□□□ -0.79
VPS52-216ENST00000471309 TRIM10Q9UDY6 481 aa10.09□□□□□ -0.79
VPS52-216ENST00000471309 NOCTQ9UK39 431 aaKnown RBP10.09□□□□□ -0.79
VPS52-216ENST00000471309 INTUQ9ULD6 942 aa10.09□□□□□ -0.79
VPS52-216ENST00000471309 GUCA1BQ9UMX6 200 aa10.09□□□□□ -0.79
VPS52-216ENST00000471309 PIN4Q9Y237 131 aaKnown RBP10.09□□□□□ -0.79
VPS52-216ENST00000471309 DERAQ9Y315 318 aa10.09□□□□□ -0.79
VPS52-216ENST00000471309 R3HCC1Q9Y3T6 440 aaKnown RBP10.09□□□□□ -0.79
VPS52-216ENST00000471309 NUB1Q9Y5A7 615 aa10.09□□□□□ -0.79
VPS52-216ENST00000471309 CDY2AQ9Y6F7 541 aa10.09□□□□□ -0.79
VPS52-216ENST00000471309 CITO14578 2027 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 SPDYE4A6NLX3 237 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 BTNL10A8MVZ5 291 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 LACTBL1A8MY62 500 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 CAND2O75155 1236 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 STAU1O95793 577 aaKnown RBP10.08□□□□□ -0.8
VPS52-216ENST00000471309 ABL1P00519 1130 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 ACO1P21399 889 aaKnown RBP10.08□□□□□ -0.8
VPS52-216ENST00000471309 CASQ1P31415 396 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 USP8P40818 1118 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 YARSP54577 528 aaKnown RBP10.08□□□□□ -0.8
VPS52-216ENST00000471309 MGAT3Q09327 533 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 PTK7Q13308 1070 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 TRPC3Q13507 836 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 ITGA7Q13683 1181 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 TMEM132DQ14C87 1099 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 ZNF569Q5MCW4 686 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 UBXN11Q5T124 520 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 SPOPLQ6IQ16 392 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 ALKBH5Q6P6C2 394 aaKnown RBP10.08□□□□□ -0.8
VPS52-216ENST00000471309 NOP9Q86U38 636 aaKnown RBP10.08□□□□□ -0.8
VPS52-216ENST00000471309 FAM228AQ86W67 206 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 GLYCTKQ8IVS8 523 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 RNF10Q8N5U6 811 aaKnown RBP10.08□□□□□ -0.8
VPS52-216ENST00000471309 UBR7Q8N806 425 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 C1orf127Q8N9H9 656 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 SECISBP2LQ93073 1101 aaKnown RBP10.08□□□□□ -0.8
VPS52-216ENST00000471309 WNT8BQ93098 351 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 SNX27Q96L92 541 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 GLT1D1Q96MS3 346 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 TSPAN18Q96SJ8 248 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 ARID3AQ99856 593 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 BEGAINQ9BUH8 593 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 EIF2AQ9BY44 585 aaKnown RBP10.08□□□□□ -0.8
VPS52-216ENST00000471309 NIF3L1Q9GZT8 377 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.08□□□□□ -0.8
VPS52-216ENST00000471309 XYLT2Q9H1B5 865 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 VRTNQ9H8Y1 702 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 L2HGDHQ9H9P8 463 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.08□□□□□ -0.87e-8■■■■■ 186.3
VPS52-216ENST00000471309 ITGA11Q9UKX5 1188 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 TFR2Q9UP52 801 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 PHF24Q9UPV7 400 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 CNTN6Q9UQ52 1028 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 TRIM17Q9Y577 477 aa10.08□□□□□ -0.8
VPS52-216ENST00000471309 UMODL1Q5DID0 1318 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 ANO9A1A5B4 782 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 MACROD2A1Z1Q3 448 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 RIOK3O14730 519 aaKnown RBP10.07□□□□□ -0.8
VPS52-216ENST00000471309 CYP26A1O43174 497 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 SGPL1O95470 568 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 CST3P01034 146 aaPredicted RBP10.07□□□□□ -0.8
VPS52-216ENST00000471309 CTSHP09668 335 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 H2AFZP0C0S5 128 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 CYP11B1P15538 503 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 TNFAIP3P21580 790 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 ATICP31939 592 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 BPIFB4P59827 614 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 MYL6P60660 151 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 CDR2Q01850 454 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 ZNF699Q32M78 642 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 H2AFVQ71UI9 128 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 SLC47A2Q86VL8 602 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 ZNF677Q86XU0 584 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 SLC35F6Q8N357 371 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 SLC43A3Q8NBI5 491 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 ARRDC4Q8NCT1 418 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 TRIM58Q8NG06 486 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 CXorf38Q8TB03 319 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 U2AF1L4Q8WU68 220 aaKnown RBP10.07□□□□□ -0.8
VPS52-216ENST00000471309 SLC20A1Q8WUM9 679 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 ELMO3Q96BJ8 720 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 ALS2CR12Q96Q35 445 aa10.07□□□□□ -0.8
VPS52-216ENST00000471309 NAPGQ99747 312 aaPredicted RBP10.07□□□□□ -0.8
VPS52-216ENST00000471309 SEZ6LQ9BYH1 1024 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms