RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 ICA1Q05084 483 aa5.89□□□□□ -1.47
HMGB1-207ENST00000468384 CCINQ13939 588 aa5.89□□□□□ -1.47
HMGB1-207ENST00000468384 RASGRF1Q13972 1273 aa5.89□□□□□ -1.47
HMGB1-207ENST00000468384 MRPL58Q14197 206 aaKnown RBP5.89□□□□□ -1.47
HMGB1-207ENST00000468384 GRM2Q14416 872 aa5.89□□□□□ -1.47
HMGB1-207ENST00000468384 DUOXA1Q1HG43 343 aa5.89□□□□□ -1.47
HMGB1-207ENST00000468384 CCDC62Q6P9F0 684 aa5.89□□□□□ -1.47
HMGB1-207ENST00000468384 TMEM179Q6ZVK1 233 aa5.89□□□□□ -1.47
HMGB1-207ENST00000468384 ARMCX6Q7L4S7 300 aa5.89□□□□□ -1.47
HMGB1-207ENST00000468384 DHX40Q8IX18 779 aaKnown RBP5.89□□□□□ -1.47
HMGB1-207ENST00000468384 CEP76Q8TAP6 659 aa5.89□□□□□ -1.47
HMGB1-207ENST00000468384 BAHD1Q8TBE0 780 aaPredicted RBP5.89□□□□□ -1.47
HMGB1-207ENST00000468384 ZNF564Q8TBZ8 553 aaPredicted RBP5.89□□□□□ -1.47
HMGB1-207ENST00000468384 PIGOQ8TEQ8 1089 aa5.89□□□□□ -1.47
HMGB1-207ENST00000468384 KCNE4Q8WWG9 221 aa5.89□□□□□ -1.47
HMGB1-207ENST00000468384 TMEM169Q96HH4 297 aa5.89□□□□□ -1.47
HMGB1-207ENST00000468384 LURAP1Q96LR2 239 aa5.89□□□□□ -1.47
HMGB1-207ENST00000468384 GAD1Q99259 594 aa5.89□□□□□ -1.47
HMGB1-207ENST00000468384 CDC6Q99741 560 aa5.89□□□□□ -1.47
HMGB1-207ENST00000468384 TTPALQ9BTX7 342 aa5.89□□□□□ -1.47
HMGB1-207ENST00000468384 SAP130Q9H0E3 1048 aa5.89□□□□□ -1.47
HMGB1-207ENST00000468384 TSPAN10Q9H1Z9 355 aaPredicted RBP5.89□□□□□ -1.47
HMGB1-207ENST00000468384 RNPEPQ9H4A4 650 aa5.89□□□□□ -1.47
HMGB1-207ENST00000468384 OSBPL3Q9H4L5 887 aa5.89□□□□□ -1.47
HMGB1-207ENST00000468384 ZNF334Q9HCZ1 680 aaPredicted RBP5.89□□□□□ -1.47
HMGB1-207ENST00000468384 TRPV5Q9NQA5 729 aa5.89□□□□□ -1.47
HMGB1-207ENST00000468384 POLR3BQ9NW08 1133 aaPredicted RBP5.89□□□□□ -1.47
HMGB1-207ENST00000468384 ADD3Q9UEY8 706 aaKnown RBP5.89□□□□□ -1.47
HMGB1-207ENST00000468384 NCANO14594 1321 aa5.89□□□□□ -1.47
HMGB1-207ENST00000468384 ATXN2Q99700 1313 aaKnown RBP5.89□□□□□ -1.47
HMGB1-207ENST00000468384 LOC102724159A0A0B4J2E5 919 aa5.88□□□□□ -1.47
HMGB1-207ENST00000468384 PTPDC1A2A3K4 754 aa5.88□□□□□ -1.47
HMGB1-207ENST00000468384 NT5C1B-RDH14C9J2C7 533 aa5.88□□□□□ -1.47
HMGB1-207ENST00000468384 BAG3O95817 575 aa5.88□□□□□ -1.47
HMGB1-207ENST00000468384 CSTF2P33240 577 aaKnown RBP eCLIP5.88□□□□□ -1.47
HMGB1-207ENST00000468384 HNF1BP35680 557 aa5.88□□□□□ -1.47
HMGB1-207ENST00000468384 DPP6P42658 865 aa5.88□□□□□ -1.47
HMGB1-207ENST00000468384 PTGER3P43115 390 aa5.88□□□□□ -1.47
HMGB1-207ENST00000468384 UQCRFS1P47985 274 aa5.88□□□□□ -1.47
HMGB1-207ENST00000468384 METAP2P50579 478 aaKnown RBP eCLIP5.88□□□□□ -1.47
HMGB1-207ENST00000468384 GDF10P55107 478 aa5.88□□□□□ -1.47
HMGB1-207ENST00000468384 NTHL1P78549 312 aa5.88□□□□□ -1.47
HMGB1-207ENST00000468384 TARDBPQ13148 414 aaKnown RBP eCLIP5.88□□□□□ -1.47
HMGB1-207ENST00000468384 PWP2Q15269 919 aaKnown RBP5.88□□□□□ -1.47
HMGB1-207ENST00000468384 LY6KQ17RY6 165 aa5.88□□□□□ -1.47
HMGB1-207ENST00000468384 PEAR1Q5VY43 1037 aaPredicted RBP5.88□□□□□ -1.47
HMGB1-207ENST00000468384 TANGO2Q6ICL3 276 aa5.88□□□□□ -1.47
HMGB1-207ENST00000468384 C1orf228Q6PIY5 440 aa5.88□□□□□ -1.47
HMGB1-207ENST00000468384 GRASPQ7Z6J2 395 aaPredicted RBP5.88□□□□□ -1.47
HMGB1-207ENST00000468384 VSIG10LQ86VR7 867 aa5.88□□□□□ -1.47
HMGB1-207ENST00000468384 MAP4K3Q8IVH8 894 aa5.88□□□□□ -1.47
HMGB1-207ENST00000468384 MCEMP1Q8IX19 187 aa5.88□□□□□ -1.47
HMGB1-207ENST00000468384 SREK1Q8WXA9 508 aaKnown RBP5.88□□□□□ -1.47
HMGB1-207ENST00000468384 EXTL1Q92935 676 aa5.88□□□□□ -1.47
HMGB1-207ENST00000468384 CFAP53Q96M91 514 aa5.88□□□□□ -1.47
HMGB1-207ENST00000468384 NUP88Q99567 741 aaPredicted RBP5.88□□□□□ -1.47
HMGB1-207ENST00000468384 BACH2Q9BYV9 841 aa5.88□□□□□ -1.47
HMGB1-207ENST00000468384 DPH1Q9BZG8 443 aa5.88□□□□□ -1.47
HMGB1-207ENST00000468384 EBF1Q9UH73 591 aa5.88□□□□□ -1.47
HMGB1-207ENST00000468384 SERTAD1Q9UHV2 236 aa5.88□□□□□ -1.47
HMGB1-207ENST00000468384 PILRBQ9UKJ0 227 aa5.88□□□□□ -1.47
HMGB1-207ENST00000468384 ARHGAP10A1A4S6 786 aa5.87□□□□□ -1.47
HMGB1-207ENST00000468384 GLUD1P00367 558 aa5.87□□□□□ -1.47
HMGB1-207ENST00000468384 POLR3DP05423 398 aaPredicted RBP5.87□□□□□ -1.47
HMGB1-207ENST00000468384 CD99P14209 185 aa5.87□□□□□ -1.47
HMGB1-207ENST00000468384 HOXD12P35452 270 aa5.87□□□□□ -1.47
HMGB1-207ENST00000468384 MLLT6P55198 1093 aaPredicted RBP5.87□□□□□ -1.47
HMGB1-207ENST00000468384 CLDN6P56747 220 aa5.87□□□□□ -1.47
HMGB1-207ENST00000468384 USP39Q53GS9 565 aaKnown RBP5.87□□□□□ -1.47
HMGB1-207ENST00000468384 CCDC81Q6ZN84 652 aa5.87□□□□□ -1.47
HMGB1-207ENST00000468384 TTC6Q86TZ1 520 aa5.87□□□□□ -1.47
HMGB1-207ENST00000468384 LRRC43Q8N309 656 aa5.87□□□□□ -1.47
HMGB1-207ENST00000468384 DAGLBQ8NCG7 672 aa5.87□□□□□ -1.47
HMGB1-207ENST00000468384 LRRN4CLQ8ND94 238 aa5.87□□□□□ -1.47
HMGB1-207ENST00000468384 LINS1Q8NG48 757 aa5.87□□□□□ -1.47
HMGB1-207ENST00000468384 ITFG1Q8TB96 612 aa5.87□□□□□ -1.47
HMGB1-207ENST00000468384 BCL7CQ8WUZ0 217 aaPredicted RBP5.87□□□□□ -1.47
HMGB1-207ENST00000468384 DRC1Q96MC2 740 aa5.87□□□□□ -1.47
HMGB1-207ENST00000468384 CASD1Q96PB1 797 aa5.87□□□□□ -1.47
HMGB1-207ENST00000468384 TRMT61BQ9BVS5 477 aaKnown RBP5.87□□□□□ -1.47
HMGB1-207ENST00000468384 TMEM117Q9H0C3 514 aa5.87□□□□□ -1.47
HMGB1-207ENST00000468384 ETNK1Q9HBU6 452 aa5.87□□□□□ -1.47
HMGB1-207ENST00000468384 ZDHHC7Q9NXF8 308 aa5.87□□□□□ -1.47
HMGB1-207ENST00000468384 DYRK1BQ9Y463 629 aa5.87□□□□□ -1.47
HMGB1-207ENST00000468384 LAS1LQ9Y4W2 734 aaKnown RBP5.87□□□□□ -1.47
HMGB1-207ENST00000468384 SUPT16HQ9Y5B9 1047 aaKnown RBP5.87□□□□□ -1.47
HMGB1-207ENST00000468384 PDS5AQ29RF7 1337 aaKnown RBP5.87□□□□□ -1.47
HMGB1-207ENST00000468384 PCDH15Q96QU1 1955 aa5.87□□□□□ -1.47
HMGB1-207ENST00000468384 ANK2Q01484 3957 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 ZNF469Q96JG9 3925 aaPredicted RBP5.86□□□□□ -1.47
HMGB1-207ENST00000468384 COL4A2P08572 1712 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 A0A1W2PRU2 124 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 PRRG2O14669 202 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 BACH1O14867 736 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 NDUFB5O43674 189 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 ATG13O75143 517 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 APBB3O95704 486 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 SYPP08247 313 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 SPATA31D3P0C874 917 aa5.86□□□□□ -1.47
HMGB1-207ENST00000468384 GNAT1P11488 350 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms