RNA–Protein interactions for RNA: ENST00000466288.1

CXCR4-203, Transcript of C-X-C motif chemokine receptor 4, humanhuman

TSL 1 (best)

Gene CXCR4, Length 1,485 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-203ENST00000466288 SPEM1Q8N4L4 309 aa15.96■□□□□ 0.14
CXCR4-203ENST00000466288 ZSWIM3Q96MP5 696 aa15.96■□□□□ 0.14
CXCR4-203ENST00000466288 ARID2Q68CP9 1835 aa15.95■□□□□ 0.14
CXCR4-203ENST00000466288 I3L4J1 428 aa15.95■□□□□ 0.14
CXCR4-203ENST00000466288 ARNTLO00327 626 aa15.95■□□□□ 0.14
CXCR4-203ENST00000466288 ZNF197O14709 1029 aa15.95■□□□□ 0.14
CXCR4-203ENST00000466288 N4BP3O15049 544 aa15.95■□□□□ 0.14
CXCR4-203ENST00000466288 CCNE1P24864 410 aa15.95■□□□□ 0.14
CXCR4-203ENST00000466288 LIMK1P53667 647 aa15.95■□□□□ 0.14
CXCR4-203ENST00000466288 PTGDRQ13258 359 aa15.95■□□□□ 0.14
CXCR4-203ENST00000466288 TOB2Q14106 344 aaPredicted RBP15.95■□□□□ 0.14
CXCR4-203ENST00000466288 UPP1Q16831 310 aa15.95■□□□□ 0.14
CXCR4-203ENST00000466288 CENPQQ7L2Z9 268 aaPredicted RBP15.95■□□□□ 0.14
CXCR4-203ENST00000466288 LONP2Q86WA8 852 aa15.95■□□□□ 0.14
CXCR4-203ENST00000466288 SKAP1Q86WV1 359 aa15.95■□□□□ 0.14
CXCR4-203ENST00000466288 C3orf58Q8NDZ4 430 aa15.95■□□□□ 0.14
CXCR4-203ENST00000466288 PIGOQ8TEQ8 1089 aa15.95■□□□□ 0.14
CXCR4-203ENST00000466288 DEPDC1BQ8WUY9 529 aa15.95■□□□□ 0.14
CXCR4-203ENST00000466288 SMARCD2Q92925 531 aa15.95■□□□□ 0.14
CXCR4-203ENST00000466288 PPP1R10Q96QC0 940 aaKnown RBP15.95■□□□□ 0.14
CXCR4-203ENST00000466288 USP20Q9Y2K6 914 aa15.95■□□□□ 0.14
CXCR4-203ENST00000466288 COL4A2P08572 1712 aa15.95■□□□□ 0.14
CXCR4-203ENST00000466288 NCANO14594 1321 aa15.95■□□□□ 0.14
CXCR4-203ENST00000466288 A0A087WWV3 80 aa15.94■□□□□ 0.14
CXCR4-203ENST00000466288 PRRG1O14668 218 aa15.94■□□□□ 0.14
CXCR4-203ENST00000466288 CPLX1O14810 134 aa15.94■□□□□ 0.14
CXCR4-203ENST00000466288 USO1O60763 962 aaKnown RBP15.94■□□□□ 0.14
CXCR4-203ENST00000466288 MOSPD3O75425 235 aa15.94■□□□□ 0.14
CXCR4-203ENST00000466288 ATF2P15336 505 aa15.94■□□□□ 0.14
CXCR4-203ENST00000466288 VIPR2P41587 438 aa15.94■□□□□ 0.14
CXCR4-203ENST00000466288 BRCC3P46736 316 aa15.94■□□□□ 0.14
CXCR4-203ENST00000466288 MLLT6P55198 1093 aaPredicted RBP15.94■□□□□ 0.14
CXCR4-203ENST00000466288 EARS2Q5JPH6 523 aaKnown RBP15.94■□□□□ 0.14
CXCR4-203ENST00000466288 WDR44Q5JSH3 913 aa15.94■□□□□ 0.14
CXCR4-203ENST00000466288 GLRA4Q5JXX5 417 aa15.94■□□□□ 0.14
CXCR4-203ENST00000466288 IL31Q6EBC2 164 aa15.94■□□□□ 0.14
CXCR4-203ENST00000466288 PIK3AP1Q6ZUJ8 805 aa15.94■□□□□ 0.14
CXCR4-203ENST00000466288 PDZD4Q76G19 769 aaPredicted RBP15.94■□□□□ 0.14
CXCR4-203ENST00000466288 MAEAQ7L5Y9 396 aa15.94■□□□□ 0.14
CXCR4-203ENST00000466288 FAM160A2Q8N612 972 aaPredicted RBP15.94■□□□□ 0.14
CXCR4-203ENST00000466288 OXER1Q8TDS5 423 aa15.94■□□□□ 0.14
CXCR4-203ENST00000466288 NAP1L4Q99733 375 aaKnown RBP15.94■□□□□ 0.14
CXCR4-203ENST00000466288 ZNF263O14978 683 aa15.93■□□□□ 0.14
CXCR4-203ENST00000466288 TRAPPC3O43617 180 aa15.93■□□□□ 0.14
CXCR4-203ENST00000466288 CDC45O75419 566 aa15.93■□□□□ 0.14
CXCR4-203ENST00000466288 BAG4O95429 457 aaKnown RBP15.93■□□□□ 0.14
CXCR4-203ENST00000466288 SEC24AO95486 1093 aa15.93■□□□□ 0.14
CXCR4-203ENST00000466288 EDN1P05305 212 aa15.93■□□□□ 0.14
CXCR4-203ENST00000466288 HOXC13P31276 330 aa15.93■□□□□ 0.14
CXCR4-203ENST00000466288 ELF1P32519 619 aa15.93■□□□□ 0.14
CXCR4-203ENST00000466288 PRPF4BQ13523 1007 aaKnown RBP15.93■□□□□ 0.14
CXCR4-203ENST00000466288 EEF1DP3Q658K8 133 aa15.93■□□□□ 0.14
CXCR4-203ENST00000466288 MFSD6LQ8IWD5 586 aa15.93■□□□□ 0.14
CXCR4-203ENST00000466288 ZBTB8OSQ8IWT0 167 aa15.93■□□□□ 0.14
CXCR4-203ENST00000466288 TCEAL8Q8IYN2 117 aa15.93■□□□□ 0.14
CXCR4-203ENST00000466288 TRPV4Q9HBA0 871 aa15.93■□□□□ 0.14
CXCR4-203ENST00000466288 GOLGA2P5Q9HBQ8 144 aa15.93■□□□□ 0.14
CXCR4-203ENST00000466288 RXFP3Q9NSD7 469 aa15.93■□□□□ 0.14
CXCR4-203ENST00000466288 RBM12Q9NTZ6 932 aaKnown RBP15.93■□□□□ 0.14
CXCR4-203ENST00000466288 C2orf42Q9NWW7 574 aa15.93■□□□□ 0.14
CXCR4-203ENST00000466288 GDAQ9Y2T3 454 aa15.93■□□□□ 0.14
CXCR4-203ENST00000466288 INSL5Q9Y5Q6 135 aa15.93■□□□□ 0.14
CXCR4-203ENST00000466288 CNOT1A5YKK6 2376 aaKnown RBP15.93■□□□□ 0.14
CXCR4-203ENST00000466288 CEP295Q9C0D2 2601 aa15.93■□□□□ 0.14
CXCR4-203ENST00000466288 ATRXP46100 2492 aa15.92■□□□□ 0.14
CXCR4-203ENST00000466288 PSMA5P28066 241 aa15.92■□□□□ 0.14
CXCR4-203ENST00000466288 SF3A2Q15428 464 aaKnown RBP15.92■□□□□ 0.14
CXCR4-203ENST00000466288 HEATR6Q6AI08 1181 aaKnown RBP15.92■□□□□ 0.14
CXCR4-203ENST00000466288 Q6ZS52 159 aa15.92■□□□□ 0.14
CXCR4-203ENST00000466288 HS6ST3Q8IZP7 471 aa15.92■□□□□ 0.14
CXCR4-203ENST00000466288 ZNF274Q96GC6 653 aaPredicted RBP15.92■□□□□ 0.14
CXCR4-203ENST00000466288 CCDC43Q96MW1 224 aaKnown RBP15.92■□□□□ 0.14
CXCR4-203ENST00000466288 UROC1Q96N76 676 aa15.92■□□□□ 0.14
CXCR4-203ENST00000466288 CCDC113Q9H0I3 377 aa15.92■□□□□ 0.14
CXCR4-203ENST00000466288 CYP4F11Q9HBI6 524 aa15.92■□□□□ 0.14
CXCR4-203ENST00000466288 GJB4Q9NTQ9 266 aa15.92■□□□□ 0.14
CXCR4-203ENST00000466288 PCDHA12Q9UN75 941 aa15.92■□□□□ 0.14
CXCR4-203ENST00000466288 FAM205CA6NFA0 338 aa15.91■□□□□ 0.14
CXCR4-203ENST00000466288 ACKR2O00590 384 aa15.91■□□□□ 0.14
CXCR4-203ENST00000466288 PRKCBP05771 671 aa15.91■□□□□ 0.14
CXCR4-203ENST00000466288 XRCC6P12956 609 aaKnown RBP eCLIP15.91■□□□□ 0.14
CXCR4-203ENST00000466288 COL9A2Q14055 689 aaPredicted RBP15.91■□□□□ 0.14
CXCR4-203ENST00000466288 LRRC32Q14392 662 aa15.91■□□□□ 0.14
CXCR4-203ENST00000466288 MAPK6Q16659 721 aa15.91■□□□□ 0.14
CXCR4-203ENST00000466288 AASDHQ4L235 1098 aaPredicted RBP15.91■□□□□ 0.14
CXCR4-203ENST00000466288 CYP4A22Q5TCH4 519 aa15.91■□□□□ 0.14
CXCR4-203ENST00000466288 ZSCAN18Q8TBC5 510 aaPredicted RBP15.91■□□□□ 0.14
CXCR4-203ENST00000466288 BSNDQ8WZ55 320 aa15.91■□□□□ 0.14
CXCR4-203ENST00000466288 MSANTD3Q96H12 275 aa15.91■□□□□ 0.14
CXCR4-203ENST00000466288 ADPGKQ9BRR6 497 aa15.91■□□□□ 0.14
CXCR4-203ENST00000466288 LARP6Q9BRS8 491 aaKnown RBP15.91■□□□□ 0.14
CXCR4-203ENST00000466288 C2orf40Q9H1Z8 148 aa15.91■□□□□ 0.14
CXCR4-203ENST00000466288 HEPACAM2A8MVW5 462 aa15.91■□□□□ 0.14
CXCR4-203ENST00000466288 PROS1P07225 676 aa15.91■□□□□ 0.14
CXCR4-203ENST00000466288 GJA1P17302 382 aa15.91■□□□□ 0.14
CXCR4-203ENST00000466288 HOXA6P31267 233 aa15.91■□□□□ 0.14
CXCR4-203ENST00000466288 EPHA5P54756 1037 aa15.91■□□□□ 0.14
CXCR4-203ENST00000466288 ARPP19P56211 112 aa15.91■□□□□ 0.14
CXCR4-203ENST00000466288 SOX4Q06945 474 aaPredicted RBP15.91■□□□□ 0.14
CXCR4-203ENST00000466288 MRPL58Q14197 206 aaKnown RBP15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms