RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 RTN4RL1Q86UN2 441 aaPredicted RBP11.15□□□□□ -0.62
USP39-210ENST00000459775 TMEM174Q8WUU8 243 aa11.15□□□□□ -0.62
USP39-210ENST00000459775 GUCD1Q96NT3 240 aa11.15□□□□□ -0.62
USP39-210ENST00000459775 WNT8AQ9H1J5 351 aa11.15□□□□□ -0.62
USP39-210ENST00000459775 HIPK3Q9H422 1215 aa11.15□□□□□ -0.62
USP39-210ENST00000459775 ERVK-5Q9HDB9 667 aa11.15□□□□□ -0.62
USP39-210ENST00000459775 TMEM265A0A087WTH1 108 aa11.15□□□□□ -0.62
USP39-210ENST00000459775 LACTBL1A8MY62 500 aa11.15□□□□□ -0.62
USP39-210ENST00000459775 MCF2P10911 925 aa11.15□□□□□ -0.62
USP39-210ENST00000459775 FMO5P49326 533 aa11.15□□□□□ -0.62
USP39-210ENST00000459775 PAK2Q13177 524 aa11.15□□□□□ -0.62
USP39-210ENST00000459775 SLC10A6Q3KNW5 377 aa11.15□□□□□ -0.62
USP39-210ENST00000459775 FAM26DQ5JW98 314 aa11.15□□□□□ -0.62
USP39-210ENST00000459775 GLRA4Q5JXX5 417 aa11.15□□□□□ -0.62
USP39-210ENST00000459775 INTS8Q75QN2 995 aaKnown RBP11.15□□□□□ -0.62
USP39-210ENST00000459775 CCDC186Q7Z3E2 898 aa11.15□□□□□ -0.62
USP39-210ENST00000459775 DEFB128Q7Z7B8 93 aa11.15□□□□□ -0.62
USP39-210ENST00000459775 RNF169Q8NCN4 708 aa11.15□□□□□ -0.62
USP39-210ENST00000459775 SMG8Q8ND04 991 aaKnown RBP11.15□□□□□ -0.62
USP39-210ENST00000459775 SEMA4DQ92854 862 aa11.15□□□□□ -0.62
USP39-210ENST00000459775 PCMTD1Q96MG8 357 aaPredicted RBP11.15□□□□□ -0.62
USP39-210ENST00000459775 TMEM117Q9H0C3 514 aa11.15□□□□□ -0.62
USP39-210ENST00000459775 NUCKS1Q9H1E3 243 aaKnown RBP11.15□□□□□ -0.62
USP39-210ENST00000459775 PRDM5Q9NQX1 630 aaPredicted RBP11.15□□□□□ -0.62
USP39-210ENST00000459775 AJAP1Q9UKB5 411 aaPredicted RBP11.15□□□□□ -0.62
USP39-210ENST00000459775 SIK3Q9Y2K2 1263 aa11.15□□□□□ -0.62
USP39-210ENST00000459775 DCDC2CA8MYV0 355 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 NFICP08651 508 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 SELPP16109 830 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 TNNI1P19237 187 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 ADKP55263 362 aaKnown RBP11.14□□□□□ -0.63
USP39-210ENST00000459775 RBL2Q08999 1139 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 NCBP1Q09161 790 aaKnown RBP11.14□□□□□ -0.63
USP39-210ENST00000459775 LRMPQ12912 555 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 PTPROQ16827 1216 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 SWT1Q5T5J6 900 aaKnown RBP11.14□□□□□ -0.63
USP39-210ENST00000459775 EFCAB13Q8IY85 973 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 MNS1Q8NEH6 495 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 TAS1R2Q8TE23 839 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 ZFP42Q96MM3 310 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 PPP1R9BQ96SB3 815 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 ADAM2Q99965 735 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 PI4K2AQ9BTU6 479 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 TRIM6Q9C030 488 aaPredicted RBP11.14□□□□□ -0.63
USP39-210ENST00000459775 RETREG1Q9H6L5 497 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 CACNG4Q9UBN1 327 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 IPPQ9Y573 584 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 SCINQ9Y6U3 715 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 TRIM43BA6NCK2 446 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 PSMD6Q15008 389 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 DPY19L2P1Q6NXN4 242 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 SV2AQ7L0J3 742 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 BRSK2Q8IWQ3 736 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 DBF4BQ8NFT6 615 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 LINC01599Q8WXQ3 324 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 TRIM43Q96BQ3 446 aaPredicted RBP11.14□□□□□ -0.63
USP39-210ENST00000459775 VWCEQ96DN2 955 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 ZMAT2Q96NC0 199 aaKnown RBP11.14□□□□□ -0.63
USP39-210ENST00000459775 FNBP1Q96RU3 617 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 ADPGKQ9BRR6 497 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 IFIH1Q9BYX4 1025 aaKnown RBP11.14□□□□□ -0.63
USP39-210ENST00000459775 RPF1Q9H9Y2 349 aaKnown RBP11.14□□□□□ -0.63
USP39-210ENST00000459775 TMEM39AQ9NV64 488 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 PRKAG2Q9UGJ0 569 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 PARP2Q9UGN5 583 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 PCDHB2Q9Y5E7 798 aa11.14□□□□□ -0.63
USP39-210ENST00000459775 GPR182O15218 404 aa11.13□□□□□ -0.63
USP39-210ENST00000459775 RECQL4O94761 1208 aa11.13□□□□□ -0.63
USP39-210ENST00000459775 NOL4O94818 638 aa11.13□□□□□ -0.63
USP39-210ENST00000459775 GYPCP04921 128 aa11.13□□□□□ -0.63
USP39-210ENST00000459775 PON1P27169 355 aa11.13□□□□□ -0.63
USP39-210ENST00000459775 TFAMQ00059 246 aaKnown RBP11.13□□□□□ -0.63
USP39-210ENST00000459775 MYL7Q01449 175 aa11.13□□□□□ -0.63
USP39-210ENST00000459775 PDAP1Q13442 181 aaKnown RBP11.13□□□□□ -0.63
USP39-210ENST00000459775 FKBP15Q5T1M5 1219 aa11.13□□□□□ -0.63
USP39-210ENST00000459775 TDRD10Q5VZ19 366 aaKnown RBP11.13□□□□□ -0.63
USP39-210ENST00000459775 SPECC1LQ69YQ0 1117 aa11.13□□□□□ -0.63
USP39-210ENST00000459775 JADE1Q6IE81 842 aa11.13□□□□□ -0.63
USP39-210ENST00000459775 ACAP3Q96P50 834 aa11.13□□□□□ -0.63
USP39-210ENST00000459775 LSM14BQ9BX40 385 aaKnown RBP11.13□□□□□ -0.63
USP39-210ENST00000459775 MTMR12Q9C0I1 747 aa11.13□□□□□ -0.63
USP39-210ENST00000459775 GCNT4Q9P109 453 aa11.13□□□□□ -0.63
USP39-210ENST00000459775 TBX21Q9UL17 535 aa11.13□□□□□ -0.63
USP39-210ENST00000459775 PLAGL2Q9UPG8 496 aa11.13□□□□□ -0.63
USP39-210ENST00000459775 VNN1O95497 513 aa11.12□□□□□ -0.63
USP39-210ENST00000459775 LDHAP00338 332 aaKnown RBP11.12□□□□□ -0.63
USP39-210ENST00000459775 CST3P01034 146 aaPredicted RBP11.12□□□□□ -0.63
USP39-210ENST00000459775 TPM3P06753 285 aa11.12□□□□□ -0.63
USP39-210ENST00000459775 CLTAP09496 248 aa11.12□□□□□ -0.63
USP39-210ENST00000459775 PNMA6AP0CW24 399 aaPredicted RBP11.12□□□□□ -0.63
USP39-210ENST00000459775 IGFBP6P24592 240 aaPredicted RBP11.12□□□□□ -0.63
USP39-210ENST00000459775 CASP14P31944 242 aa11.12□□□□□ -0.63
USP39-210ENST00000459775 CCDC173Q0VFZ6 552 aa11.12□□□□□ -0.63
USP39-210ENST00000459775 BFSP2Q13515 415 aa11.12□□□□□ -0.63
USP39-210ENST00000459775 DSC3Q14574 896 aa11.12□□□□□ -0.63
USP39-210ENST00000459775 C11orf91Q3C1V1 193 aa11.12□□□□□ -0.63
USP39-210ENST00000459775 SPOPLQ6IQ16 392 aa11.12□□□□□ -0.63
USP39-210ENST00000459775 ZSCAN30Q86W11 494 aa11.12□□□□□ -0.63
USP39-210ENST00000459775 MAFAQ8NHW3 353 aaPredicted RBP11.12□□□□□ -0.63
USP39-210ENST00000459775 CAGE1Q8TC20 777 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms