RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 PTGIRP43119 386 aa12.6□□□□□ -0.39
MSH6-204ENST00000445503 MUM1Q2TAK8 710 aa12.6□□□□□ -0.39
MSH6-204ENST00000445503 C6orf89Q6UWU4 347 aa12.6□□□□□ -0.39
MSH6-204ENST00000445503 BTNL9Q6UXG8 535 aa12.6□□□□□ -0.39
MSH6-204ENST00000445503 RFX8Q6ZV50 586 aa12.6□□□□□ -0.39
MSH6-204ENST00000445503 GPD1LQ8N335 351 aa12.6□□□□□ -0.39
MSH6-204ENST00000445503 STMN2Q93045 179 aa12.6□□□□□ -0.39
MSH6-204ENST00000445503 PCSK1NQ9UHG2 260 aa12.6□□□□□ -0.39
MSH6-204ENST00000445503 PCYOX1Q9UHG3 505 aa12.6□□□□□ -0.39
MSH6-204ENST00000445503 LRP5O75197 1615 aa12.6□□□□□ -0.39
MSH6-204ENST00000445503 IRS2Q9Y4H2 1338 aa12.6□□□□□ -0.39
MSH6-204ENST00000445503 RGL2O15211 777 aa12.6□□□□□ -0.39
MSH6-204ENST00000445503 CYP3A4P08684 503 aa12.6□□□□□ -0.39
MSH6-204ENST00000445503 ATP2A2P16615 1042 aaKnown RBP12.6□□□□□ -0.39
MSH6-204ENST00000445503 TFAMQ00059 246 aaKnown RBP12.6□□□□□ -0.39
MSH6-204ENST00000445503 RRP1BQ14684 758 aaKnown RBP12.6□□□□□ -0.39
MSH6-204ENST00000445503 PREPLQ4J6C6 727 aaPredicted RBP12.6□□□□□ -0.39
MSH6-204ENST00000445503 MSTO1Q9BUK6 570 aa12.6□□□□□ -0.39
MSH6-204ENST00000445503 CALN1Q9BXU9 219 aa12.6□□□□□ -0.39
MSH6-204ENST00000445503 HERC5Q9UII4 1024 aaKnown RBP12.6□□□□□ -0.39
MSH6-204ENST00000445503 SERPINA10Q9UK55 444 aa12.6□□□□□ -0.39
MSH6-204ENST00000445503 DOT1LQ8TEK3 1739 aa12.6□□□□□ -0.39
MSH6-204ENST00000445503 PLCH1Q4KWH8 1693 aa12.6□□□□□ -0.39
MSH6-204ENST00000445503 GHRP10912 638 aa12.6□□□□□ -0.39
MSH6-204ENST00000445503 RPS6P62753 249 aaKnown RBP12.6□□□□□ -0.39
MSH6-204ENST00000445503 NINJ2Q9NZG7 142 aa12.6□□□□□ -0.39
MSH6-204ENST00000445503 KDM4FA0A1W2PPD8 638 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 FAM47DPA6NHR8 397 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 A8MUI8 341 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 HLA-DRAP01903 254 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 ATP13A4Q4VNC1 1196 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 CEP128Q6ZU80 1094 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 EEPD1Q7L9B9 569 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 AGAP11Q8TF27 550 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 MBOAT7Q96N66 472 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 NPHS2Q9NP85 383 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 HAO1Q9UJM8 370 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 R3HDM2Q9Y2K5 976 aaKnown RBP12.59□□□□□ -0.39
MSH6-204ENST00000445503 BCORQ6W2J9 1755 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 PLIN4Q96Q06 1357 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 SRRM3A6NNA2 597 aaPredicted RBP12.59□□□□□ -0.39
MSH6-204ENST00000445503 P4HA2O15460 535 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 ENTPD3O75355 529 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 ASNSP08243 561 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 VIL1P09327 827 aaKnown RBP12.59□□□□□ -0.39
MSH6-204ENST00000445503 LMNB2Q03252 620 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 OVGP1Q12889 678 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 DACT2Q5SW24 774 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 CENPUQ71F23 418 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 LMNTD2Q8IXW0 634 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 CNKSR1Q969H4 720 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 TTC17Q96AE7 1141 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 SPDL1Q96EA4 605 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 TMEM237Q96Q45 408 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 POLR3FQ9H1D9 316 aaPredicted RBP12.59□□□□□ -0.39
MSH6-204ENST00000445503 ZNF277Q9NRM2 450 aaPredicted RBP12.59□□□□□ -0.39
MSH6-204ENST00000445503 TMX2Q9Y320 296 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 ZMYM2Q9UBW7 1377 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 STAM2O75886 525 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 MSH2P43246 934 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 RASSF2P50749 326 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 DRG2P55039 364 aaKnown RBP12.59□□□□□ -0.39
MSH6-204ENST00000445503 DGKZQ13574 1117 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 STAT4Q14765 748 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 SCYL2Q6P3W7 929 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 PARD3BQ8TEW8 1205 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 CENPTQ96BT3 561 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 C10orf88Q9H8K7 445 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 DNAJC8O75937 253 aaPredicted RBP12.59□□□□□ -0.39
MSH6-204ENST00000445503 TJP3O95049 919 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 RAD23BP54727 409 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 CAV1Q03135 178 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 BAATQ14032 418 aaPredicted RBP12.59□□□□□ -0.39
MSH6-204ENST00000445503 SMTNL2Q2TAL5 461 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 RFX6Q8HWS3 928 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 FAM71AQ8IYT1 594 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 ART4Q93070 314 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 FAM81BQ96LP2 452 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 IDI2Q9BXS1 227 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 RBAKQ9NYW8 714 aaPredicted RBP12.59□□□□□ -0.39
MSH6-204ENST00000445503 WHRNQ9P202 907 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 ZNF70Q9UC06 446 aaPredicted RBP12.59□□□□□ -0.39
MSH6-204ENST00000445503 PCDHB2Q9Y5E7 798 aa12.59□□□□□ -0.39
MSH6-204ENST00000445503 ANKRD36CQ5JPF3 1778 aa12.58□□□□□ -0.39
MSH6-204ENST00000445503 AFF2P51816 1311 aa12.58□□□□□ -0.4
MSH6-204ENST00000445503 ETS1P14921 441 aa12.58□□□□□ -0.4
MSH6-204ENST00000445503 ZC3H3Q8IXZ2 948 aaKnown RBP12.58□□□□□ -0.4
MSH6-204ENST00000445503 DAW1Q8N136 415 aa12.58□□□□□ -0.4
MSH6-204ENST00000445503 TRIM6Q9C030 488 aaPredicted RBP12.58□□□□□ -0.4
MSH6-204ENST00000445503 DCLK3Q9C098 648 aa12.58□□□□□ -0.4
MSH6-204ENST00000445503 AGO2Q9UKV8 859 aaKnown RBP12.58□□□□□ -0.4
MSH6-204ENST00000445503 GJA3Q9Y6H8 435 aa12.58□□□□□ -0.4
MSH6-204ENST00000445503 DOCK2Q92608 1830 aa12.58□□□□□ -0.4
MSH6-204ENST00000445503 CFAP69A5D8W1 941 aa12.58□□□□□ -0.4
MSH6-204ENST00000445503 DKC1O60832 514 aaKnown RBP eCLIP12.58□□□□□ -0.4
MSH6-204ENST00000445503 RCN2Q14257 317 aa12.58□□□□□ -0.4
MSH6-204ENST00000445503 CCDC62Q6P9F0 684 aa12.58□□□□□ -0.4
MSH6-204ENST00000445503 CCHCR1Q8TD31 782 aa12.58□□□□□ -0.4
MSH6-204ENST00000445503 DMAC2Q9NW81 257 aa12.58□□□□□ -0.4
MSH6-204ENST00000445503 PCDHA10Q9Y5I2 948 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms