RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 ADCY2Q08462 1091 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 GALNT2Q10471 571 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 SF3B3Q15393 1217 aaKnown RBP2.57□□□□□ -2
CCDC88A-208ENST00000444458 CTXN3Q4LDR2 81 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 ARHGAP15Q53QZ3 475 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 BMP2KLQ5H9B9 411 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 MAP3K21Q5TCX8 1036 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 ATG16L1Q676U5 607 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 KRT74Q7RTS7 529 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 THAP5Q7Z6K1 395 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 DNAJB8Q8NHS0 232 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 CSGALNACT1Q8TDX6 532 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 ZNF653Q96CK0 615 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 FNBP1Q96RU3 617 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 UHRF1Q96T88 793 aaPredicted RBP2.57□□□□□ -2
CCDC88A-208ENST00000444458 NRSN2Q9GZP1 204 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 OR10A4Q9H209 315 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 SMARCAD1Q9H4L7 1026 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 MLXIPQ9HAP2 919 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 TAB2Q9NYJ8 693 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 WDR35Q9P2L0 1181 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 SRP68Q9UHB9 627 aaKnown RBP2.57□□□□□ -2
CCDC88A-208ENST00000444458 TBK1Q9UHD2 729 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 KNSTRNQ9Y448 316 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 PCDHGC5Q9Y5F6 944 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 FAM171A2A8MVW0 826 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 MAN2B1O00754 1011 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 HNRNPCL1O60812 293 aaKnown RBP2.57□□□□□ -2
CCDC88A-208ENST00000444458 BEST1O76090 585 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 SCGB1D1O95968 90 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 SLC4A1P02730 911 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 AMY2AP04746 511 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 ATP5BP06576 529 aaKnown RBP2.57□□□□□ -2
CCDC88A-208ENST00000444458 CSH1P0DML2 217 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 CSH2P0DML3 217 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 AMY2BP19961 511 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 AOAHP28039 575 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 AKT1P31749 480 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 PPARGP37231 505 aaPredicted RBP2.57□□□□□ -2
CCDC88A-208ENST00000444458 PHKA1P46020 1223 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 CARSP49589 748 aaKnown RBP2.57□□□□□ -2
CCDC88A-208ENST00000444458 KHDC1Q4VXA5 237 aaKnown RBP2.57□□□□□ -2
CCDC88A-208ENST00000444458 PARP10Q53GL7 1025 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 FAM69AQ5T7M9 428 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 BTBD8Q5XKL5 378 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 CYP4F22Q6NT55 531 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 FDX2Q6P4F2 183 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 UNC13DQ70J99 1090 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 GALNT7Q86SF2 657 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 DIS3L2Q8IYB7 885 aaKnown RBP2.57□□□□□ -2
CCDC88A-208ENST00000444458 SAMD14Q8IZD0 417 aaPredicted RBP2.57□□□□□ -2
CCDC88A-208ENST00000444458 ANKRD20A12PQ8NF67 263 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 PIP4K2CQ8TBX8 421 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 PPP1R13LQ8WUF5 828 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 ANKS1AQ92625 1134 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 TMX3Q96JJ7 454 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 GBP4Q96PP9 640 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 TRAPPC9Q96Q05 1148 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 MMP19Q99542 508 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 ACAT2Q9BWD1 397 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 EPB41L1Q9H4G0 881 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 SEPT11Q9NVA2 429 aaKnown RBP2.57□□□□□ -2
CCDC88A-208ENST00000444458 SRRDQ9UH36 339 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 B3GALT1Q9Y5Z6 326 aa2.57□□□□□ -2
CCDC88A-208ENST00000444458 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP2.57□□□□□ -2
CCDC88A-208ENST00000444458 IRS2Q9Y4H2 1338 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 C17orf113A0A1B0GUU1 675 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 NKRFO15226 690 aaKnown RBP eCLIP2.56□□□□□ -2
CCDC88A-208ENST00000444458 LILRB5O75023 590 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 DGAT1O75907 488 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 MT-ND5P03915 603 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 SYPP08247 313 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 SCG2P13521 617 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 EEF2P13639 858 aaKnown RBP2.56□□□□□ -2
CCDC88A-208ENST00000444458 EDNRBP24530 442 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 CTSSP25774 331 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 NFKBIAP25963 317 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 GCH1P30793 250 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 HADHAP40939 763 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 PRPHP41219 470 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 MCM2P49736 904 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 PRKAA2P54646 552 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 UBXN2AP68543 259 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 CREB5Q02930 508 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 SLC13A2Q13183 592 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 DBN1Q16643 649 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 FYB2Q5VWT5 728 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 RCSD1Q6JBY9 416 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 SLC30A9Q6PML9 568 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 TMTC3Q6ZXV5 915 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 ARHGEF25Q86VW2 580 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 OTUD6BQ8N6M0 293 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 UTP15Q8TED0 518 aaKnown RBP2.56□□□□□ -2
CCDC88A-208ENST00000444458 THAP4Q8WY91 577 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 HERVK_113Q902F9 699 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 TNPO1Q92973 898 aaKnown RBP2.56□□□□□ -2
CCDC88A-208ENST00000444458 KIF1BPQ96EK5 621 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 PIGSQ96S52 555 aa2.56□□□□□ -2
CCDC88A-208ENST00000444458 DDX23Q9BUQ8 820 aaKnown RBP2.56□□□□□ -2
CCDC88A-208ENST00000444458 CYP4F11Q9HBI6 524 aa2.56□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms