RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 ZC3H18Q86VM9 953 aaKnown RBP9.19□□□□□ -0.94
USP40-203ENST00000427112 ZNF395Q9H8N7 513 aaPredicted RBP9.19□□□□□ -0.94
USP40-203ENST00000427112 UBN1Q9NPG3 1134 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 HOMER3Q9NSC5 361 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 ADAM22Q9P0K1 906 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 ARMCX1Q9P291 453 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 CFAP69A5D8W1 941 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 TLR3O15455 904 aaKnown RBP9.19□□□□□ -0.94
USP40-203ENST00000427112 KRT1P04264 644 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 RPA3P35244 121 aaPredicted RBP9.19□□□□□ -0.94
USP40-203ENST00000427112 PCK1P35558 622 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 ARSEP51690 589 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 ARHGEF16Q5VV41 709 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 HOMEZQ8IX15 550 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 RHOT2Q8IXI1 618 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 EFCAB3Q8N7B9 438 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 MYLK2Q9H1R3 596 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 GINM1Q9NU53 330 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 RAB20Q9NX57 234 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 KLHL14Q9P2G3 628 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 RGS17Q9UGC6 210 aaPredicted RBP9.19□□□□□ -0.94
USP40-203ENST00000427112 NHSL1Q5SYE7 1610 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 TTLL13PA6NNM8 815 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 SLC16A3O15427 465 aaKnown RBP9.19□□□□□ -0.94
USP40-203ENST00000427112 SUN1O94901 812 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 SRGAP2CP0DJJ0 459 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 NQO1P15559 274 aaKnown RBP9.19□□□□□ -0.94
USP40-203ENST00000427112 SMARCA1P28370 1054 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 DSG3P32926 999 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 GMPRP36959 345 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 RAP1GAPP47736 663 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 MFAP3P55082 362 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 NLRP11P59045 1033 aaKnown RBP9.19□□□□□ -0.94
USP40-203ENST00000427112 ZBTB16Q05516 673 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 PDIA2Q13087 525 aaKnown RBP9.19□□□□□ -0.94
USP40-203ENST00000427112 RCN2Q14257 317 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 CRY2Q49AN0 593 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 TAOK1Q7L7X3 1001 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 CTAGE3PQ8IX95 158 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 ZNF513Q8N8E2 541 aaPredicted RBP9.19□□□□□ -0.94
USP40-203ENST00000427112 TTC17Q96AE7 1141 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 MCEEQ96PE7 176 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 CYTH2Q99418 400 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 POLR3CQ9BUI4 534 aaPredicted RBP9.19□□□□□ -0.94
USP40-203ENST00000427112 TARS2Q9BW92 718 aaKnown RBP9.19□□□□□ -0.94
USP40-203ENST00000427112 OLFML3Q9NRN5 406 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 ADGRA3Q8IWK6 1321 aa9.19□□□□□ -0.94
USP40-203ENST00000427112 SCN7AQ01118 1682 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 YDJCA8MPS7 323 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 AVILO75366 819 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 CCNE2O96020 404 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 QARSP47897 775 aaKnown RBP9.18□□□□□ -0.94
USP40-203ENST00000427112 LIG4P49917 911 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 MRPS9P82933 396 aaKnown RBP9.18□□□□□ -0.94
USP40-203ENST00000427112 BAATQ14032 418 aaPredicted RBP9.18□□□□□ -0.94
USP40-203ENST00000427112 GNPTABQ3T906 1256 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 DACT2Q5SW24 774 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 HHATQ5VTY9 493 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 PCNX4Q63HM2 1172 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 ECHDC2Q86YB7 292 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 SLC25A41Q8N5S1 370 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 NSRP1Q9H0G5 558 aaKnown RBP9.18□□□□□ -0.94
USP40-203ENST00000427112 ACTR5Q9H9F9 607 aaPredicted RBP9.18□□□□□ -0.94
USP40-203ENST00000427112 NAV1Q8NEY1 1877 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 BASP1P80723 227 aaKnown RBP9.18□□□□□ -0.94
USP40-203ENST00000427112 FSTL1Q12841 308 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 TAF5Q15542 800 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 TAF11Q15544 211 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 RAB6CQ53S08 254 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 MIS18BP1Q6P0N0 1132 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 THNSL1Q8IYQ7 743 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 OGFOD1Q8N543 542 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 HSPH1Q92598 858 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 PGLYRP2Q96PD5 576 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 RAB6CQ9H0N0 254 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 C1orf112Q9NSG2 853 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 MCM8Q9UJA3 840 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 PACSIN3Q9UKS6 424 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 AGTPBP1Q9UPW5 1226 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 GJA3Q9Y6H8 435 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 PTPRJQ12913 1337 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 ARAP2Q8WZ64 1704 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 COL16A1Q07092 1604 aaPredicted RBP9.18□□□□□ -0.94
USP40-203ENST00000427112 FAM155BO75949 473 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 TOP3BO95985 862 aaKnown RBP9.18□□□□□ -0.94
USP40-203ENST00000427112 GAS8O95995 478 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 DMP1Q13316 513 aaPredicted RBP9.18□□□□□ -0.94
USP40-203ENST00000427112 BRDTQ58F21 947 aaPredicted RBP9.18□□□□□ -0.94
USP40-203ENST00000427112 MFSD7Q6UXD7 560 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 APBB1IPQ7Z5R6 666 aaPredicted RBP9.18□□□□□ -0.94
USP40-203ENST00000427112 C1orf131Q8NDD1 294 aaKnown RBP9.18□□□□□ -0.94
USP40-203ENST00000427112 FBXL13Q8NEE6 735 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 MXRA8Q9BRK3 442 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 CALN1Q9BXU9 219 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 FBXO6Q9NRD1 293 aaPredicted RBP9.18□□□□□ -0.94
USP40-203ENST00000427112 NOCTQ9UK39 431 aaKnown RBP9.18□□□□□ -0.94
USP40-203ENST00000427112 IVNS1ABPQ9Y6Y0 642 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 AFF2P51816 1311 aa9.18□□□□□ -0.94
USP40-203ENST00000427112 PECAM1P16284 738 aaPredicted RBP9.17□□□□□ -0.94
USP40-203ENST00000427112 RAD23BP54727 409 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms