RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 LMBR1Q8WVP7 490 aa6.67□□□□□ -1.34
LINC01040-201ENST00000425048 SMG7Q92540 1137 aaKnown RBP6.67□□□□□ -1.34
LINC01040-201ENST00000425048 HOXB13Q92826 284 aaPredicted RBP6.67□□□□□ -1.34
LINC01040-201ENST00000425048 CYFIP2Q96F07 1278 aa6.67□□□□□ -1.34
LINC01040-201ENST00000425048 MED15Q96RN5 788 aa6.67□□□□□ -1.34
LINC01040-201ENST00000425048 ADI1Q9BV57 179 aa6.67□□□□□ -1.34
LINC01040-201ENST00000425048 SLC29A3Q9BZD2 475 aa6.67□□□□□ -1.34
LINC01040-201ENST00000425048 KMT5AQ9NQR1 393 aa6.67□□□□□ -1.34
LINC01040-201ENST00000425048 SLC23A1Q9UHI7 598 aa6.67□□□□□ -1.34
LINC01040-201ENST00000425048 AJAP1Q9UKB5 411 aaPredicted RBP6.67□□□□□ -1.34
LINC01040-201ENST00000425048 ARHGEF17Q96PE2 2063 aaPredicted RBP6.67□□□□□ -1.34
LINC01040-201ENST00000425048 COL3A1P02461 1466 aaPredicted RBP6.66□□□□□ -1.34
LINC01040-201ENST00000425048 DNAJC9-AS1A6NH13 148 aa6.66□□□□□ -1.34
LINC01040-201ENST00000425048 ENDOD1O94919 500 aa6.66□□□□□ -1.34
LINC01040-201ENST00000425048 ALAS1P13196 640 aa6.66□□□□□ -1.34
LINC01040-201ENST00000425048 FOLR3P41439 243 aa6.66□□□□□ -1.34
LINC01040-201ENST00000425048 UBE3BQ7Z3V4 1068 aa6.66□□□□□ -1.34
LINC01040-201ENST00000425048 KCNK18Q7Z418 384 aa6.66□□□□□ -1.34
LINC01040-201ENST00000425048 NUP133Q8WUM0 1156 aa6.66□□□□□ -1.34
LINC01040-201ENST00000425048 MYOCQ99972 504 aa6.66□□□□□ -1.34
LINC01040-201ENST00000425048 GSTO2Q9H4Y5 243 aa6.66□□□□□ -1.34
LINC01040-201ENST00000425048 APOBEC2Q9Y235 224 aaKnown RBP6.66□□□□□ -1.34
LINC01040-201ENST00000425048 FPR1P21462 350 aa6.65□□□□□ -1.34
LINC01040-201ENST00000425048 MCAMP43121 646 aa6.65□□□□□ -1.34
LINC01040-201ENST00000425048 SRSF4Q08170 494 aaKnown RBP6.65□□□□□ -1.34
LINC01040-201ENST00000425048 GRASPQ7Z6J2 395 aaPredicted RBP6.65□□□□□ -1.34
LINC01040-201ENST00000425048 CMIPQ8IY22 773 aa6.65□□□□□ -1.34
LINC01040-201ENST00000425048 UROC1Q96N76 676 aa6.65□□□□□ -1.34
LINC01040-201ENST00000425048 ORAI2Q96SN7 254 aa6.65□□□□□ -1.34
LINC01040-201ENST00000425048 DMRT3Q9NQL9 472 aa6.65□□□□□ -1.34
LINC01040-201ENST00000425048 IL17RBQ9NRM6 502 aa6.65□□□□□ -1.34
LINC01040-201ENST00000425048 ASB6Q9NWX5 421 aa6.65□□□□□ -1.34
LINC01040-201ENST00000425048 RNF7Q9UBF6 113 aa6.65□□□□□ -1.34
LINC01040-201ENST00000425048 ARPP21Q9UBL0 812 aaPredicted RBP6.65□□□□□ -1.34
LINC01040-201ENST00000425048 ACTL7AQ9Y615 435 aa6.65□□□□□ -1.34
LINC01040-201ENST00000425048 SETD1BQ9UPS6 1966 aaKnown RBP6.65□□□□□ -1.34
LINC01040-201ENST00000425048 TRGV11A0A075B6L2 103 aa6.64□□□□□ -1.35
LINC01040-201ENST00000425048 KRTAP29-1A8MX34 341 aaPredicted RBP6.64□□□□□ -1.35
LINC01040-201ENST00000425048 ORC4O43929 436 aa6.64□□□□□ -1.35
LINC01040-201ENST00000425048 ITGB6P18564 788 aa6.64□□□□□ -1.35
LINC01040-201ENST00000425048 SCAND1P57086 179 aa6.64□□□□□ -1.35
LINC01040-201ENST00000425048 MALLQ13021 153 aa6.64□□□□□ -1.35
LINC01040-201ENST00000425048 STRN3Q13033 797 aa6.64□□□□□ -1.35
LINC01040-201ENST00000425048 SH2D3CQ8N5H7 860 aa6.64□□□□□ -1.35
LINC01040-201ENST00000425048 CCDC151A5D8V7 595 aa6.63□□□□□ -1.35
LINC01040-201ENST00000425048 NOMO3P69849 1222 aa6.63□□□□□ -1.35
LINC01040-201ENST00000425048 GEN1Q17RS7 908 aa6.63□□□□□ -1.35
LINC01040-201ENST00000425048 NOMO2Q5JPE7 1267 aa6.63□□□□□ -1.35
LINC01040-201ENST00000425048 TOR2AQ5JU69 321 aa6.63□□□□□ -1.35
LINC01040-201ENST00000425048 ZNF788Q6ZQV5 615 aa6.63□□□□□ -1.35
LINC01040-201ENST00000425048 NPM2Q86SE8 214 aaKnown RBP6.63□□□□□ -1.35
LINC01040-201ENST00000425048 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.63□□□□□ -1.35
LINC01040-201ENST00000425048 SSH3Q8TE77 659 aa6.63□□□□□ -1.35
LINC01040-201ENST00000425048 SCARB1Q8WTV0 552 aa6.63□□□□□ -1.35
LINC01040-201ENST00000425048 TIMP4Q99727 224 aa6.63□□□□□ -1.35
LINC01040-201ENST00000425048 HSFX1Q9UBD0 423 aa6.63□□□□□ -1.35
LINC01040-201ENST00000425048 YY2O15391 372 aa6.62□□□□□ -1.35
LINC01040-201ENST00000425048 ZFPL1O95159 310 aa6.62□□□□□ -1.35
LINC01040-201ENST00000425048 PCSK1P29120 753 aa6.62□□□□□ -1.35
LINC01040-201ENST00000425048 SLC5A3P53794 718 aa6.62□□□□□ -1.35
LINC01040-201ENST00000425048 FAPQ12884 760 aa6.62□□□□□ -1.35
LINC01040-201ENST00000425048 SF3B3Q15393 1217 aaKnown RBP6.62□□□□□ -1.35
LINC01040-201ENST00000425048 TAF7LQ5H9L4 462 aa6.62□□□□□ -1.35
LINC01040-201ENST00000425048 KAZNQ674X7 775 aa6.62□□□□□ -1.35
LINC01040-201ENST00000425048 KIAA0895LQ68EN5 471 aa6.62□□□□□ -1.35
LINC01040-201ENST00000425048 RNF180Q86T96 592 aa6.62□□□□□ -1.35
LINC01040-201ENST00000425048 JAZF1Q86VZ6 243 aa6.62□□□□□ -1.35
LINC01040-201ENST00000425048 CCHCR1Q8TD31 782 aa6.62□□□□□ -1.35
LINC01040-201ENST00000425048 GPR32O75388 356 aa6.61□□□□□ -1.35
LINC01040-201ENST00000425048 SEPT2Q15019 361 aa6.61□□□□□ -1.35
LINC01040-201ENST00000425048 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.61□□□□□ -1.35
LINC01040-201ENST00000425048 BHLHA9Q7RTU4 235 aa6.61□□□□□ -1.35
LINC01040-201ENST00000425048 Q8NA96 180 aa6.61□□□□□ -1.35
LINC01040-201ENST00000425048 TBC1D15Q8TC07 691 aa6.61□□□□□ -1.35
LINC01040-201ENST00000425048 ENTPD2Q9Y5L3 495 aa6.61□□□□□ -1.35
LINC01040-201ENST00000425048 TCRBV7S2A1N4TA0A589 114 aa6.6□□□□□ -1.35
LINC01040-201ENST00000425048 CGB1A6NKQ9 187 aa6.6□□□□□ -1.35
LINC01040-201ENST00000425048 FAM171A2A8MVW0 826 aa6.6□□□□□ -1.35
LINC01040-201ENST00000425048 MPPED1O15442 326 aa6.6□□□□□ -1.35
LINC01040-201ENST00000425048 BRINP1O60477 761 aa6.6□□□□□ -1.35
LINC01040-201ENST00000425048 SLC6A9P48067 706 aa6.6□□□□□ -1.35
LINC01040-201ENST00000425048 GYS2P54840 703 aa6.6□□□□□ -1.35
LINC01040-201ENST00000425048 CREMQ03060 361 aa6.6□□□□□ -1.35
LINC01040-201ENST00000425048 MGAT2Q10469 447 aa6.6□□□□□ -1.35
LINC01040-201ENST00000425048 KIAA1614Q5VZ46 1190 aa6.6□□□□□ -1.35
LINC01040-201ENST00000425048 VWA1Q6PCB0 445 aa6.6□□□□□ -1.35
LINC01040-201ENST00000425048 PTF1AQ7RTS3 328 aa6.6□□□□□ -1.35
LINC01040-201ENST00000425048 NLGN4YQ8NFZ3 816 aaPredicted RBP6.6□□□□□ -1.35
LINC01040-201ENST00000425048 MANSC1Q9H8J5 431 aa6.6□□□□□ -1.35
LINC01040-201ENST00000425048 CPNE5Q9HCH3 593 aa6.6□□□□□ -1.35
LINC01040-201ENST00000425048 RUVBL1Q9Y265 456 aaKnown RBP6.6□□□□□ -1.35
LINC01040-201ENST00000425048 PCDHGA2Q9Y5H1 932 aa6.6□□□□□ -1.35
LINC01040-201ENST00000425048 CDHR4A6H8M9 788 aa6.59□□□□□ -1.35
LINC01040-201ENST00000425048 SRGNP10124 158 aa6.59□□□□□ -1.35
LINC01040-201ENST00000425048 WT1P19544 449 aaPredicted RBP6.59□□□□□ -1.35
LINC01040-201ENST00000425048 GPD1P21695 349 aa6.59□□□□□ -1.35
LINC01040-201ENST00000425048 ZNF81P51508 661 aa6.59□□□□□ -1.35
LINC01040-201ENST00000425048 SRSF2Q01130 221 aaKnown RBP6.59□□□□□ -1.35
LINC01040-201ENST00000425048 MTM1Q13496 603 aa6.59□□□□□ -1.35
LINC01040-201ENST00000425048 ATP2B3Q16720 1220 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms